Cmc08g0235321 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0235321
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr08: 31759112 .. 31759912 (-)
RNA-Seq Expression	Cmc08g0235321
Synteny	Cmc08g0235321

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCAGAATACTTACTAATGTGAGGTATGTTCCAAAACTCAATCGTAATCTAATATCCCTTGGTGAATTAGATAGATTAGGTTGTACCATAAAATCTGAAAATGGAGTTATGAAAGTTACCAAAGGTTCTTTGGTTAAACTGAGGGGAACCTTGAGGCATGGTCTATATGTGTTGGAAGGTACTACAGTTTCAGGTAGTGCTGCTATTGCGTCAGGCAAAGTTACAGATATGTTTATGTTATGGCATAAAAGGCTAGCTCATGTGAGTGAAATAGGCTTACAAGCACTTTCTCAACAAGGTTTGTTGGGAGGAGTTAAAAATGTTGAACTCCCATTCTGTGAACATTGTATAATGGGAAAGTCTACCAGAGTAAAGTTTGGGAAAGGGAAGCACACAACCAAAGGTATTTTGGATTATGTTCACTCATATTTGTGGGGTCCTATGAAAGAGGCTTCTATGGGAGGTTCGAGATACTTTATTTCTATCATTGATGATTTTTCAAGAAAAGTGTGGATTTATCCATTGAAACAAAAGGATGAAGCTTTTGGAAAATTTCTTGAATGGAAGAAGCAGGTTGAGAAACAAACAGGTAGGAAGATTAAGTATCTGGGAACAGATAATGGTTTAGAGTTTGTAAATAACAAATTTAACAACTTTTGCAAATATGAGGGAATCACGAGGCACTTTACTGTTACATACACTCCACAACAAAACGGTTTGGCTGAGAGGTTTAAAAGAACTATCATGGAACTAACAAGGTGTCTCTTAACTAATGCTTCATTACCATTGAAATTTTAG

mRNA sequence

ATGGTCAGAATACTTACTAATGTGAGGTATGTTCCAAAACTCAATCGTAATCTAATATCCCTTGGTGAATTAGATAGATTAGGTTGTACCATAAAATCTGAAAATGGAGTTATGAAAGTTACCAAAGGTTCTTTGGTTAAACTGAGGGGAACCTTGAGGCATGGTCTATATGTGTTGGAAGGTACTACAGTTTCAGGTAGTGCTGCTATTGCGTCAGGCAAAGTTACAGATATGTTTATGTTATGGCATAAAAGGCTAGCTCATGTGAGTGAAATAGGCTTACAAGCACTTTCTCAACAAGGTTTGTTGGGAGGAGTTAAAAATGTTGAACTCCCATTCTGTGAACATTGTATAATGGGAAAGTCTACCAGAGTAAAGTTTGGGAAAGGGAAGCACACAACCAAAGGTATTTTGGATTATGTTCACTCATATTTGTGGGGTCCTATGAAAGAGGCTTCTATGGGAGGTTCGAGATACTTTATTTCTATCATTGATGATTTTTCAAGAAAAGTGTGGATTTATCCATTGAAACAAAAGGATGAAGCTTTTGGAAAATTTCTTGAATGGAAGAAGCAGGTTGAGAAACAAACAGGTAGGAAGATTAAGTATCTGGGAACAGATAATGGTTTAGAGTTTGTAAATAACAAATTTAACAACTTTTGCAAATATGAGGGAATCACGAGGCACTTTACTGTTACATACACTCCACAACAAAACGGTTTGGCTGAGAGGTTTAAAAGAACTATCATGGAACTAACAAGGTGTCTCTTAACTAATGCTTCATTACCATTGAAATTTTAG

Coding sequence (CDS)

ATGGTCAGAATACTTACTAATGTGAGGTATGTTCCAAAACTCAATCGTAATCTAATATCCCTTGGTGAATTAGATAGATTAGGTTGTACCATAAAATCTGAAAATGGAGTTATGAAAGTTACCAAAGGTTCTTTGGTTAAACTGAGGGGAACCTTGAGGCATGGTCTATATGTGTTGGAAGGTACTACAGTTTCAGGTAGTGCTGCTATTGCGTCAGGCAAAGTTACAGATATGTTTATGTTATGGCATAAAAGGCTAGCTCATGTGAGTGAAATAGGCTTACAAGCACTTTCTCAACAAGGTTTGTTGGGAGGAGTTAAAAATGTTGAACTCCCATTCTGTGAACATTGTATAATGGGAAAGTCTACCAGAGTAAAGTTTGGGAAAGGGAAGCACACAACCAAAGGTATTTTGGATTATGTTCACTCATATTTGTGGGGTCCTATGAAAGAGGCTTCTATGGGAGGTTCGAGATACTTTATTTCTATCATTGATGATTTTTCAAGAAAAGTGTGGATTTATCCATTGAAACAAAAGGATGAAGCTTTTGGAAAATTTCTTGAATGGAAGAAGCAGGTTGAGAAACAAACAGGTAGGAAGATTAAGTATCTGGGAACAGATAATGGTTTAGAGTTTGTAAATAACAAATTTAACAACTTTTGCAAATATGAGGGAATCACGAGGCACTTTACTGTTACATACACTCCACAACAAAACGGTTTGGCTGAGAGGTTTAAAAGAACTATCATGGAACTAACAAGGTGTCTCTTAACTAATGCTTCATTACCATTGAAATTTTAG

Protein sequence

MVRILTNVRYVPKLNRNLISLGELDRLGCTIKSENGVMKVTKGSLVKLRGTLRHGLYVLEGTTVSGSAAIASGKVTDMFMLWHKRLAHVSEIGLQALSQQGLLGGVKNVELPFCEHCIMGKSTRVKFGKGKHTTKGILDYVHSYLWGPMKEASMGGSRYFISIIDDFSRKVWIYPLKQKDEAFGKFLEWKKQVEKQTGRKIKYLGTDNGLEFVNNKFNNFCKYEGITRHFTVTYTPQQNGLAERFKRTIMELTRCLLTNASLPLKF

Homology

[Close]

BLAST of Cmc08g0235321 vs. NCBI nr
Match: TYK13826.1 (putative polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 511.1 bits (1315), Expect = 5.6e-141
Identity = 252/266 (94.74%), Postives = 253/266 (95.11%), Query Frame = 0


Query: 1   MVRILTNVRYVPKLNRNLISLGELDRLGCTIKSENGVMKVTKGSLVKLRGTLRHGLYVLE 60
           MVRILTNVRYVPKL RNLISLGELDR GCTIKSENGVMKVTKGSLVKLRGTLRHGLYVLE
Sbjct: 171 MVRILTNVRYVPKLKRNLISLGELDRSGCTIKSENGVMKVTKGSLVKLRGTLRHGLYVLE 230

Query: 61  GTTVSGSAAIASGKVTDMFMLWHKRLAHVSEIGLQALSQQGLLGGVKNVELPFCEHCIMG 120
           GTTVSGSAAIASGKVTDM MLWHKRLAHVSE GLQALSQQGLLGGVKNVELPFCEHCIMG
Sbjct: 231 GTTVSGSAAIASGKVTDMSMLWHKRLAHVSERGLQALSQQGLLGGVKNVELPFCEHCIMG 290

Query: 121 KSTRVKFGKGKHTTKGILDYVHSYLWGPMKEASMGGSRYFISIIDDFSRKVWIYPLKQKD 180
           KSTRVKFGKGKHTTKGILDYVHS LWGP KE SMGGSRYFISIIDDFSRKVWIYPLKQKD
Sbjct: 291 KSTRVKFGKGKHTTKGILDYVHSDLWGPTKEVSMGGSRYFISIIDDFSRKVWIYPLKQKD 350

Query: 181 EAFGKFLEWKKQVEKQTGRKIKYLGTDNGLEFVNNKFNNFCKYEGITRHFTVTYTPQQNG 240
           EAFGKFLEWKKQVE QTGRK+KYL TDNGLEFVNNKFN FCK EGITRHFTVTYTPQQNG
Sbjct: 351 EAFGKFLEWKKQVENQTGRKVKYLRTDNGLEFVNNKFNQFCKSEGITRHFTVTYTPQQNG 410

Query: 241 LAERFKRTIMELTRCLLTNASLPLKF 267
           LAERF RTIME TRCLLTNASLPLKF
Sbjct: 411 LAERFNRTIMERTRCLLTNASLPLKF 436

[Close]

BLAST of Cmc08g0235321 vs. NCBI nr
Match: TYK25306.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 511.1 bits (1315), Expect = 5.6e-141
Identity = 252/266 (94.74%), Postives = 253/266 (95.11%), Query Frame = 0


Query: 1   MVRILTNVRYVPKLNRNLISLGELDRLGCTIKSENGVMKVTKGSLVKLRGTLRHGLYVLE 60
           MVRILTNVRYVPKL RNLISLGELDR GCTIKSENGVMKVTKGSLVKLRGTLRHGLYVLE
Sbjct: 341 MVRILTNVRYVPKLKRNLISLGELDRSGCTIKSENGVMKVTKGSLVKLRGTLRHGLYVLE 400

Query: 61  GTTVSGSAAIASGKVTDMFMLWHKRLAHVSEIGLQALSQQGLLGGVKNVELPFCEHCIMG 120
           GTTVSGSAAIASGKVTDM MLWHKRLAHVSE GLQALSQQGLLGGVKNVELPFCEHCIMG
Sbjct: 401 GTTVSGSAAIASGKVTDMSMLWHKRLAHVSERGLQALSQQGLLGGVKNVELPFCEHCIMG 460

Query: 121 KSTRVKFGKGKHTTKGILDYVHSYLWGPMKEASMGGSRYFISIIDDFSRKVWIYPLKQKD 180
           KSTRVKFGKGKHTTKGILDYVHS LWGP KE SMGGSRYFISIIDDFSRKVWIYPLKQKD
Sbjct: 461 KSTRVKFGKGKHTTKGILDYVHSDLWGPTKEVSMGGSRYFISIIDDFSRKVWIYPLKQKD 520

Query: 181 EAFGKFLEWKKQVEKQTGRKIKYLGTDNGLEFVNNKFNNFCKYEGITRHFTVTYTPQQNG 240
           EAFGKFLEWKKQVE QTGRK+KYL TDNGLEFVNNKFN FCK EGITRHFTVTYTPQQNG
Sbjct: 521 EAFGKFLEWKKQVENQTGRKVKYLRTDNGLEFVNNKFNQFCKSEGITRHFTVTYTPQQNG 580

Query: 241 LAERFKRTIMELTRCLLTNASLPLKF 267
           LAERF RTIME TRCLLTNASLPLKF
Sbjct: 581 LAERFNRTIMERTRCLLTNASLPLKF 606

[Close]

BLAST of Cmc08g0235321 vs. NCBI nr
Match: KAA0050719.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 511.1 bits (1315), Expect = 5.6e-141
Identity = 252/266 (94.74%), Postives = 253/266 (95.11%), Query Frame = 0


Query: 1   MVRILTNVRYVPKLNRNLISLGELDRLGCTIKSENGVMKVTKGSLVKLRGTLRHGLYVLE 60
           MVRILTNVRYVPKL RNLISLGELDR GCTIKSENGVMKVTKGSLVKLRGTLRHGLYVLE
Sbjct: 341 MVRILTNVRYVPKLKRNLISLGELDRSGCTIKSENGVMKVTKGSLVKLRGTLRHGLYVLE 400

Query: 61  GTTVSGSAAIASGKVTDMFMLWHKRLAHVSEIGLQALSQQGLLGGVKNVELPFCEHCIMG 120
           GTTVSGSAAIASGKVTDM MLWHKRLAHVSE GLQALSQQGLLGGVKNVELPFCEHCIMG
Sbjct: 401 GTTVSGSAAIASGKVTDMSMLWHKRLAHVSERGLQALSQQGLLGGVKNVELPFCEHCIMG 460

Query: 121 KSTRVKFGKGKHTTKGILDYVHSYLWGPMKEASMGGSRYFISIIDDFSRKVWIYPLKQKD 180
           KSTRVKFGKGKHTTKGILDYVHS LWGP KE SMGGSRYFISIIDDFSRKVWIYPLKQKD
Sbjct: 461 KSTRVKFGKGKHTTKGILDYVHSDLWGPTKEVSMGGSRYFISIIDDFSRKVWIYPLKQKD 520

Query: 181 EAFGKFLEWKKQVEKQTGRKIKYLGTDNGLEFVNNKFNNFCKYEGITRHFTVTYTPQQNG 240
           EAFGKFLEWKKQVE QTGRK+KYL TDNGLEFVNNKFN FCK EGITRHFTVTYTPQQNG
Sbjct: 521 EAFGKFLEWKKQVENQTGRKVKYLRTDNGLEFVNNKFNQFCKSEGITRHFTVTYTPQQNG 580

Query: 241 LAERFKRTIMELTRCLLTNASLPLKF 267
           LAERF RTIME TRCLLTNASLPLKF
Sbjct: 581 LAERFNRTIMERTRCLLTNASLPLKF 606

[Close]

BLAST of Cmc08g0235321 vs. NCBI nr
Match: KAA0047995.1 (retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa])

HSP 1 Score: 508.8 bits (1309), Expect = 2.8e-140
Identity = 250/266 (93.98%), Postives = 253/266 (95.11%), Query Frame = 0


Query: 1   MVRILTNVRYVPKLNRNLISLGELDRLGCTIKSENGVMKVTKGSLVKLRGTLRHGLYVLE 60
           MVRILTNVRYVPKL RNLISLGELDR GCTIKSENGVMKVTKGSLVKLRGTLRHGLYVLE
Sbjct: 341 MVRILTNVRYVPKLKRNLISLGELDRSGCTIKSENGVMKVTKGSLVKLRGTLRHGLYVLE 400

Query: 61  GTTVSGSAAIASGKVTDMFMLWHKRLAHVSEIGLQALSQQGLLGGVKNVELPFCEHCIMG 120
           GTTVSGSAAIASGKVT+M MLWHKRLAHVSE GLQALSQQGLLGGVKNVELPFCEHCIMG
Sbjct: 401 GTTVSGSAAIASGKVTNMSMLWHKRLAHVSERGLQALSQQGLLGGVKNVELPFCEHCIMG 460

Query: 121 KSTRVKFGKGKHTTKGILDYVHSYLWGPMKEASMGGSRYFISIIDDFSRKVWIYPLKQKD 180
           KSTRVKFGKGKHTTKGILDY+HS LWGP KE SMGGSRYFISIIDDFSRKVWIYPLKQKD
Sbjct: 461 KSTRVKFGKGKHTTKGILDYIHSDLWGPTKEVSMGGSRYFISIIDDFSRKVWIYPLKQKD 520

Query: 181 EAFGKFLEWKKQVEKQTGRKIKYLGTDNGLEFVNNKFNNFCKYEGITRHFTVTYTPQQNG 240
           EAFGKFLEWKKQVE QTGRK+KYL TDNGLEFVNNKFN FCK EGITRHFTVTYTPQQNG
Sbjct: 521 EAFGKFLEWKKQVENQTGRKVKYLRTDNGLEFVNNKFNQFCKSEGITRHFTVTYTPQQNG 580

Query: 241 LAERFKRTIMELTRCLLTNASLPLKF 267
           LAERF RTIME TRCLLTNASLPLKF
Sbjct: 581 LAERFNRTIMERTRCLLTNASLPLKF 606

[Close]

BLAST of Cmc08g0235321 vs. NCBI nr
Match: KAA0043826.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 505.0 bits (1299), Expect = 4.0e-139
Identity = 249/266 (93.61%), Postives = 251/266 (94.36%), Query Frame = 0


Query: 1   MVRILTNVRYVPKLNRNLISLGELDRLGCTIKSENGVMKVTKGSLVKLRGTLRHGLYVLE 60
           MVRILTNV YVPKL RNLISLGELDR GCTIKSENGVMKVTKGSLVKL+GTLRHGLYVLE
Sbjct: 231 MVRILTNVLYVPKLKRNLISLGELDRSGCTIKSENGVMKVTKGSLVKLKGTLRHGLYVLE 290

Query: 61  GTTVSGSAAIASGKVTDMFMLWHKRLAHVSEIGLQALSQQGLLGGVKNVELPFCEHCIMG 120
           GTTVSGSAAIASGKVTDM MLWHKRLAHVSE GLQALSQQGLLGGVKNVELPFCEHCIMG
Sbjct: 291 GTTVSGSAAIASGKVTDMSMLWHKRLAHVSERGLQALSQQGLLGGVKNVELPFCEHCIMG 350

Query: 121 KSTRVKFGKGKHTTKGILDYVHSYLWGPMKEASMGGSRYFISIIDDFSRKVWIYPLKQKD 180
           KSTRVKFGKGKH TKGILDYVHS LWGP KE SMGGSRYFISIIDDFSRKVWIYPLKQKD
Sbjct: 351 KSTRVKFGKGKHITKGILDYVHSDLWGPTKEVSMGGSRYFISIIDDFSRKVWIYPLKQKD 410

Query: 181 EAFGKFLEWKKQVEKQTGRKIKYLGTDNGLEFVNNKFNNFCKYEGITRHFTVTYTPQQNG 240
           EAFGKFLEWKKQVE QTGRK+KYL TDNGLEFVNNKFN FCK EGITRHFTVTYTPQQNG
Sbjct: 411 EAFGKFLEWKKQVENQTGRKVKYLRTDNGLEFVNNKFNQFCKSEGITRHFTVTYTPQQNG 470

Query: 241 LAERFKRTIMELTRCLLTNASLPLKF 267
           LAERF RTIME TRCLLTNASLPLKF
Sbjct: 471 LAERFNRTIMERTRCLLTNASLPLKF 496

[Close]

BLAST of Cmc08g0235321 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 1.0e-52
Identity = 112/263 (42.59%), Postives = 154/263 (58.56%), Query Frame = 0


Query: 4   ILTNVRYVPKLNRNLISLGELDRLGCTIKSENGVMKVTKGSLVKLRGTLRHGLYVLEGTT 63
           +L +VR+VP L  NLIS   LDR G      N   ++TKGSLV  +G  R  LY      
Sbjct: 349 VLKDVRHVPDLRMNLISGIALDRDGYESYFANQKWRLTKGSLVIAKGVARGTLYRTNAEI 408

Query: 64  VSGSAAIASGKVTDMFMLWHKRLAHVSEIGLQALSQQGLLGGVKNVELPFCEHCIMGKST 123
             G    A  +++    LWHKR+ H+SE GLQ L+++ L+   K   +  C++C+ GK  
Sbjct: 409 CQGELNAAQDEIS--VDLWHKRMGHMSEKGLQILAKKSLISYAKGTTVKPCDYCLFGKQH 468

Query: 124 RVKFGKGKHTTKGILDYVHSYLWGPMKEASMGGSRYFISIIDDFSRKVWIYPLKQKDEAF 183
           RV F         ILD V+S + GPM+  SMGG++YF++ IDD SRK+W+Y LK KD+ F
Sbjct: 469 RVSFQTSSERKLNILDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYILKTKDQVF 528

Query: 184 GKFLEWKKQVEKQTGRKIKYLGTDNGLEFVNNKFNNFCKYEGITRHFTVTYTPQQNGLAE 243
             F ++   VE++TGRK+K L +DNG E+ + +F  +C   GI    TV  TPQ NG+AE
Sbjct: 529 QVFQKFHALVERETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQHNGVAE 588

Query: 244 RFKRTIMELTRCLLTNASLPLKF 267
           R  RTI+E  R +L  A LP  F
Sbjct: 589 RMNRTIVEKVRSMLRMAKLPKSF 609

[Close]

BLAST of Cmc08g0235321 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 132.5 bits (332), Expect = 7.1e-30
Identity = 83/271 (30.63%), Postives = 136/271 (50.18%), Query Frame = 0


Query: 5   LTNVRYVPKLNRNLISLGELDRLGCTIKSENGVMKVTKGSL--VKLRGTLRHGLYVLEGT 64
           L +V +  +   NL+S+  L   G +I+ +   + ++K  L  VK  G L +        
Sbjct: 345 LEDVLFCKEAAGNLMSVKRLQEAGMSIEFDKSGVTISKNGLMVVKNSGMLNN------VP 404

Query: 65  TVSGSAAIASGKVTDMFMLWHKRLAHVSEIGLQALSQQGLLGG---VKNVEL--PFCEHC 124
            ++  A   + K  + F LWH+R  H+S+  L  + ++ +      + N+EL    CE C
Sbjct: 405 VINFQAYSINAKHKNNFRLWHERFGHISDGKLLEIKRKNMFSDQSLLNNLELSCEICEPC 464

Query: 125 IMGKSTRVKFGKGKHTT--KGILDYVHSYLWGPMKEASMGGSRYFISIIDDFSRKVWIYP 184
           + GK  R+ F + K  T  K  L  VHS + GP+   ++    YF+  +D F+     Y 
Sbjct: 465 LNGKQARLPFKQLKDKTHIKRPLFVVHSDVCGPITPVTLDDKNYFVIFVDQFTHYCVTYL 524

Query: 185 LKQKDEAFGKFLEWKKQVEKQTGRKIKYLGTDNGLEFVNNKFNNFCKYEGITRHFTVTYT 244
           +K K + F  F ++  + E     K+ YL  DNG E+++N+   FC  +GI+ H TV +T
Sbjct: 525 IKYKSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEMRQFCVKKGISYHLTVPHT 584

Query: 245 PQQNGLAERFKRTIMELTRCLLTNASLPLKF 267
           PQ NG++ER  RTI E  R +++ A L   F
Sbjct: 585 PQLNGVSERMIRTITEKARTMVSGAKLDKSF 609

[Close]

BLAST of Cmc08g0235321 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.4e-25
Identity = 81/263 (30.80%), Postives = 129/263 (49.05%), Query Frame = 0


Query: 5   LTNVRYVPKLNRNLISLGEL---DRLGCTIKSENGVMKVTKGSLVKLRGTLRHGLYVLEG 64
           L  V YVP +++NLIS+  L   +R+       +  +K     +  L+G  +  LY    
Sbjct: 366 LNKVLYVPNIHKNLISVYRLCNTNRVSVEFFPASFQVKDLNTGVPLLQGKTKDELYEWPI 425

Query: 65  TTVSGSAAIASGKVTDMFMLWHKRLAHVSEIGLQA-LSQQGLLGGVKNVELPFCEHCIMG 124
            +    +  AS         WH RL H S   L + +S   L     + +L  C  C + 
Sbjct: 426 ASSQAVSMFASPCSKATHSSWHSRLGHPSLAILNSVISNHSLPVLNPSHKLLSCSDCFIN 485

Query: 125 KSTRVKFGKGKHTTKGILDYVHSYLWGPMKEASMGGSRYFISIIDDFSRKVWIYPLKQKD 184
           KS +V F     T+   L+Y++S +W      S+   RY++  +D F+R  W+YPLKQK 
Sbjct: 486 KSHKVPFSNSTITSSKPLEYIYSDVWS-SPILSIDNYRYYVIFVDHFTRYTWLYPLKQKS 545

Query: 185 EAFGKFLEWKKQVEKQTGRKIKYLGTDNGLEFVNNKFNNFCKYEGITRHFTVTYTPQQNG 244
           +    F+ +K  VE +   +I  L +DNG EFV     ++    GI+   +  +TP+ NG
Sbjct: 546 QVKDTFIIFKSLVENRFQTRIGTLYSDNGGEFV--VLRDYLSQHGISHFTSPPHTPEHNG 605

Query: 245 LAERFKRTIMELTRCLLTNASLP 264
           L+ER  R I+E+   LL++AS+P
Sbjct: 606 LSERKHRHIVEMGLTLLSHASVP 625

[Close]

BLAST of Cmc08g0235321 vs. ExPASy Swiss-Prot
Match: P93293 (Uncharacterized mitochondrial protein AtMg00300 OS=Arabidopsis thaliana OX=3702 GN=AtMg00300 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.4e-22
Identity = 53/112 (47.32%), Postives = 69/112 (61.61%), Query Frame = 0


Query: 36  GVMKVTKGSLVKLRGTLRHGLYVLEGTTVSGSAAIASGKVTDMFMLWHKRLAHVSEIGLQ 95
           GV+KV KG    L+G     LY+L+G+  +G + +A     D   LWH RLAH+S+ G++
Sbjct: 27  GVLKVLKGCRTILKGNRHDSLYILQGSVETGESNLAE-TAKDETRLWHSRLAHMSQRGME 86

Query: 96  ALSQQGLLGGVKNVELPFCEHCIMGKSTRVKFGKGKHTTKGILDYVHSYLWG 148
            L ++G L   K   L FCE CI GK+ RV F  G+HTTK  LDYVHS LWG
Sbjct: 87  LLVKKGFLDSSKVSSLKFCEDCIYGKTHRVNFSTGQHTTKNPLDYVHSDLWG 137

[Close]

BLAST of Cmc08g0235321 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.9e-22
Identity = 78/264 (29.55%), Postives = 128/264 (48.48%), Query Frame = 0


Query: 5   LTNVRYVPKLNRNLISLGEL-DRLGCTIK--SENGVMKVTKGSLVKLRGTLRHGLYVLEG 64
           L N+ YVP +++NLIS+  L +  G +++    +  +K     +  L+G  +  LY    
Sbjct: 387 LHNILYVPNIHKNLISVYRLCNANGVSVEFFPASFQVKDLNTGVPLLQGKTKDELYEWPI 446

Query: 65  TTVSGSAAIASGKVTDMFMLWHKRLAHVSEIGLQALSQQGLLGGVKNVELPF--CEHCIM 124
            +    +  AS         WH RL H +   L ++     L  V N    F  C  C++
Sbjct: 447 ASSQPVSLFASPSSKATHSSWHARLGHPAPSILNSVISNYSL-SVLNPSHKFLSCSDCLI 506

Query: 125 GKSTRVKFGKGKHTTKGILDYVHSYLWGPMKEASMGGSRYFISIIDDFSRKVWIYPLKQK 184
            KS +V F +    +   L+Y++S +W      S    RY++  +D F+R  W+YPLKQK
Sbjct: 507 NKSNKVPFSQSTINSTRPLEYIYSDVWS-SPILSHDNYRYYVIFVDHFTRYTWLYPLKQK 566

Query: 185 DEAFGKFLEWKKQVEKQTGRKIKYLGTDNGLEFVNNKFNNFCKYEGITRHFTVTYTPQQN 244
            +    F+ +K  +E +   +I    +DNG EFV      +    GI+   +  +TP+ N
Sbjct: 567 SQVKETFITFKNLLENRFQTRIGTFYSDNGGEFV--ALWEYFSQHGISHLTSPPHTPEHN 626

Query: 245 GLAERFKRTIMELTRCLLTNASLP 264
           GL+ER  R I+E    LL++AS+P
Sbjct: 627 GLSERKHRHIVETGLTLLSHASIP 646

[Close]

BLAST of Cmc08g0235321 vs. ExPASy TrEMBL
Match: A0A5D3DNU1 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004440 PE=4 SV=1)

HSP 1 Score: 511.1 bits (1315), Expect = 2.7e-141
Identity = 252/266 (94.74%), Postives = 253/266 (95.11%), Query Frame = 0


Query: 1   MVRILTNVRYVPKLNRNLISLGELDRLGCTIKSENGVMKVTKGSLVKLRGTLRHGLYVLE 60
           MVRILTNVRYVPKL RNLISLGELDR GCTIKSENGVMKVTKGSLVKLRGTLRHGLYVLE
Sbjct: 341 MVRILTNVRYVPKLKRNLISLGELDRSGCTIKSENGVMKVTKGSLVKLRGTLRHGLYVLE 400

Query: 61  GTTVSGSAAIASGKVTDMFMLWHKRLAHVSEIGLQALSQQGLLGGVKNVELPFCEHCIMG 120
           GTTVSGSAAIASGKVTDM MLWHKRLAHVSE GLQALSQQGLLGGVKNVELPFCEHCIMG
Sbjct: 401 GTTVSGSAAIASGKVTDMSMLWHKRLAHVSERGLQALSQQGLLGGVKNVELPFCEHCIMG 460

Query: 121 KSTRVKFGKGKHTTKGILDYVHSYLWGPMKEASMGGSRYFISIIDDFSRKVWIYPLKQKD 180
           KSTRVKFGKGKHTTKGILDYVHS LWGP KE SMGGSRYFISIIDDFSRKVWIYPLKQKD
Sbjct: 461 KSTRVKFGKGKHTTKGILDYVHSDLWGPTKEVSMGGSRYFISIIDDFSRKVWIYPLKQKD 520

Query: 181 EAFGKFLEWKKQVEKQTGRKIKYLGTDNGLEFVNNKFNNFCKYEGITRHFTVTYTPQQNG 240
           EAFGKFLEWKKQVE QTGRK+KYL TDNGLEFVNNKFN FCK EGITRHFTVTYTPQQNG
Sbjct: 521 EAFGKFLEWKKQVENQTGRKVKYLRTDNGLEFVNNKFNQFCKSEGITRHFTVTYTPQQNG 580

Query: 241 LAERFKRTIMELTRCLLTNASLPLKF 267
           LAERF RTIME TRCLLTNASLPLKF
Sbjct: 581 LAERFNRTIMERTRCLLTNASLPLKF 606

[Close]

BLAST of Cmc08g0235321 vs. ExPASy TrEMBL
Match: A0A5D3CTV2 (Putative polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold488G00910 PE=4 SV=1)

HSP 1 Score: 511.1 bits (1315), Expect = 2.7e-141
Identity = 252/266 (94.74%), Postives = 253/266 (95.11%), Query Frame = 0


Query: 1   MVRILTNVRYVPKLNRNLISLGELDRLGCTIKSENGVMKVTKGSLVKLRGTLRHGLYVLE 60
           MVRILTNVRYVPKL RNLISLGELDR GCTIKSENGVMKVTKGSLVKLRGTLRHGLYVLE
Sbjct: 171 MVRILTNVRYVPKLKRNLISLGELDRSGCTIKSENGVMKVTKGSLVKLRGTLRHGLYVLE 230

Query: 61  GTTVSGSAAIASGKVTDMFMLWHKRLAHVSEIGLQALSQQGLLGGVKNVELPFCEHCIMG 120
           GTTVSGSAAIASGKVTDM MLWHKRLAHVSE GLQALSQQGLLGGVKNVELPFCEHCIMG
Sbjct: 231 GTTVSGSAAIASGKVTDMSMLWHKRLAHVSERGLQALSQQGLLGGVKNVELPFCEHCIMG 290

Query: 121 KSTRVKFGKGKHTTKGILDYVHSYLWGPMKEASMGGSRYFISIIDDFSRKVWIYPLKQKD 180
           KSTRVKFGKGKHTTKGILDYVHS LWGP KE SMGGSRYFISIIDDFSRKVWIYPLKQKD
Sbjct: 291 KSTRVKFGKGKHTTKGILDYVHSDLWGPTKEVSMGGSRYFISIIDDFSRKVWIYPLKQKD 350

Query: 181 EAFGKFLEWKKQVEKQTGRKIKYLGTDNGLEFVNNKFNNFCKYEGITRHFTVTYTPQQNG 240
           EAFGKFLEWKKQVE QTGRK+KYL TDNGLEFVNNKFN FCK EGITRHFTVTYTPQQNG
Sbjct: 351 EAFGKFLEWKKQVENQTGRKVKYLRTDNGLEFVNNKFNQFCKSEGITRHFTVTYTPQQNG 410

Query: 241 LAERFKRTIMELTRCLLTNASLPLKF 267
           LAERF RTIME TRCLLTNASLPLKF
Sbjct: 411 LAERFNRTIMERTRCLLTNASLPLKF 436

[Close]

BLAST of Cmc08g0235321 vs. ExPASy TrEMBL
Match: A0A5A7UB25 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold560G00190 PE=4 SV=1)

HSP 1 Score: 511.1 bits (1315), Expect = 2.7e-141
Identity = 252/266 (94.74%), Postives = 253/266 (95.11%), Query Frame = 0


Query: 1   MVRILTNVRYVPKLNRNLISLGELDRLGCTIKSENGVMKVTKGSLVKLRGTLRHGLYVLE 60
           MVRILTNVRYVPKL RNLISLGELDR GCTIKSENGVMKVTKGSLVKLRGTLRHGLYVLE
Sbjct: 341 MVRILTNVRYVPKLKRNLISLGELDRSGCTIKSENGVMKVTKGSLVKLRGTLRHGLYVLE 400

Query: 61  GTTVSGSAAIASGKVTDMFMLWHKRLAHVSEIGLQALSQQGLLGGVKNVELPFCEHCIMG 120
           GTTVSGSAAIASGKVTDM MLWHKRLAHVSE GLQALSQQGLLGGVKNVELPFCEHCIMG
Sbjct: 401 GTTVSGSAAIASGKVTDMSMLWHKRLAHVSERGLQALSQQGLLGGVKNVELPFCEHCIMG 460

Query: 121 KSTRVKFGKGKHTTKGILDYVHSYLWGPMKEASMGGSRYFISIIDDFSRKVWIYPLKQKD 180
           KSTRVKFGKGKHTTKGILDYVHS LWGP KE SMGGSRYFISIIDDFSRKVWIYPLKQKD
Sbjct: 461 KSTRVKFGKGKHTTKGILDYVHSDLWGPTKEVSMGGSRYFISIIDDFSRKVWIYPLKQKD 520

Query: 181 EAFGKFLEWKKQVEKQTGRKIKYLGTDNGLEFVNNKFNNFCKYEGITRHFTVTYTPQQNG 240
           EAFGKFLEWKKQVE QTGRK+KYL TDNGLEFVNNKFN FCK EGITRHFTVTYTPQQNG
Sbjct: 521 EAFGKFLEWKKQVENQTGRKVKYLRTDNGLEFVNNKFNQFCKSEGITRHFTVTYTPQQNG 580

Query: 241 LAERFKRTIMELTRCLLTNASLPLKF 267
           LAERF RTIME TRCLLTNASLPLKF
Sbjct: 581 LAERFNRTIMERTRCLLTNASLPLKF 606

[Close]

BLAST of Cmc08g0235321 vs. ExPASy TrEMBL
Match: A0A5A7U2U7 (Retrotransposon protein, putative, Ty1-copia sub-class OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G00590 PE=4 SV=1)

HSP 1 Score: 508.8 bits (1309), Expect = 1.3e-140
Identity = 250/266 (93.98%), Postives = 253/266 (95.11%), Query Frame = 0


Query: 1   MVRILTNVRYVPKLNRNLISLGELDRLGCTIKSENGVMKVTKGSLVKLRGTLRHGLYVLE 60
           MVRILTNVRYVPKL RNLISLGELDR GCTIKSENGVMKVTKGSLVKLRGTLRHGLYVLE
Sbjct: 341 MVRILTNVRYVPKLKRNLISLGELDRSGCTIKSENGVMKVTKGSLVKLRGTLRHGLYVLE 400

Query: 61  GTTVSGSAAIASGKVTDMFMLWHKRLAHVSEIGLQALSQQGLLGGVKNVELPFCEHCIMG 120
           GTTVSGSAAIASGKVT+M MLWHKRLAHVSE GLQALSQQGLLGGVKNVELPFCEHCIMG
Sbjct: 401 GTTVSGSAAIASGKVTNMSMLWHKRLAHVSERGLQALSQQGLLGGVKNVELPFCEHCIMG 460

Query: 121 KSTRVKFGKGKHTTKGILDYVHSYLWGPMKEASMGGSRYFISIIDDFSRKVWIYPLKQKD 180
           KSTRVKFGKGKHTTKGILDY+HS LWGP KE SMGGSRYFISIIDDFSRKVWIYPLKQKD
Sbjct: 461 KSTRVKFGKGKHTTKGILDYIHSDLWGPTKEVSMGGSRYFISIIDDFSRKVWIYPLKQKD 520

Query: 181 EAFGKFLEWKKQVEKQTGRKIKYLGTDNGLEFVNNKFNNFCKYEGITRHFTVTYTPQQNG 240
           EAFGKFLEWKKQVE QTGRK+KYL TDNGLEFVNNKFN FCK EGITRHFTVTYTPQQNG
Sbjct: 521 EAFGKFLEWKKQVENQTGRKVKYLRTDNGLEFVNNKFNQFCKSEGITRHFTVTYTPQQNG 580

Query: 241 LAERFKRTIMELTRCLLTNASLPLKF 267
           LAERF RTIME TRCLLTNASLPLKF
Sbjct: 581 LAERFNRTIMERTRCLLTNASLPLKF 606

[Close]

BLAST of Cmc08g0235321 vs. ExPASy TrEMBL
Match: A0A5A7TP18 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G001600 PE=4 SV=1)

HSP 1 Score: 505.0 bits (1299), Expect = 1.9e-139
Identity = 249/266 (93.61%), Postives = 251/266 (94.36%), Query Frame = 0


Query: 1   MVRILTNVRYVPKLNRNLISLGELDRLGCTIKSENGVMKVTKGSLVKLRGTLRHGLYVLE 60
           MVRILTNV YVPKL RNLISLGELDR GCTIKSENGVMKVTKGSLVKL+GTLRHGLYVLE
Sbjct: 231 MVRILTNVLYVPKLKRNLISLGELDRSGCTIKSENGVMKVTKGSLVKLKGTLRHGLYVLE 290

Query: 61  GTTVSGSAAIASGKVTDMFMLWHKRLAHVSEIGLQALSQQGLLGGVKNVELPFCEHCIMG 120
           GTTVSGSAAIASGKVTDM MLWHKRLAHVSE GLQALSQQGLLGGVKNVELPFCEHCIMG
Sbjct: 291 GTTVSGSAAIASGKVTDMSMLWHKRLAHVSERGLQALSQQGLLGGVKNVELPFCEHCIMG 350

Query: 121 KSTRVKFGKGKHTTKGILDYVHSYLWGPMKEASMGGSRYFISIIDDFSRKVWIYPLKQKD 180
           KSTRVKFGKGKH TKGILDYVHS LWGP KE SMGGSRYFISIIDDFSRKVWIYPLKQKD
Sbjct: 351 KSTRVKFGKGKHITKGILDYVHSDLWGPTKEVSMGGSRYFISIIDDFSRKVWIYPLKQKD 410

Query: 181 EAFGKFLEWKKQVEKQTGRKIKYLGTDNGLEFVNNKFNNFCKYEGITRHFTVTYTPQQNG 240
           EAFGKFLEWKKQVE QTGRK+KYL TDNGLEFVNNKFN FCK EGITRHFTVTYTPQQNG
Sbjct: 411 EAFGKFLEWKKQVENQTGRKVKYLRTDNGLEFVNNKFNQFCKSEGITRHFTVTYTPQQNG 470

Query: 241 LAERFKRTIMELTRCLLTNASLPLKF 267
           LAERF RTIME TRCLLTNASLPLKF
Sbjct: 471 LAERFNRTIMERTRCLLTNASLPLKF 496

[Close]

BLAST of Cmc08g0235321 vs. TAIR 10
Match: ATMG00300.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 108.2 bits (269), Expect = 1.0e-23
Identity = 53/112 (47.32%), Postives = 69/112 (61.61%), Query Frame = 0


Query: 36  GVMKVTKGSLVKLRGTLRHGLYVLEGTTVSGSAAIASGKVTDMFMLWHKRLAHVSEIGLQ 95
           GV+KV KG    L+G     LY+L+G+  +G + +A     D   LWH RLAH+S+ G++
Sbjct: 27  GVLKVLKGCRTILKGNRHDSLYILQGSVETGESNLAE-TAKDETRLWHSRLAHMSQRGME 86

Query: 96  ALSQQGLLGGVKNVELPFCEHCIMGKSTRVKFGKGKHTTKGILDYVHSYLWG 148
            L ++G L   K   L FCE CI GK+ RV F  G+HTTK  LDYVHS LWG
Sbjct: 87  LLVKKGFLDSSKVSSLKFCEDCIYGKTHRVNFSTGQHTTKNPLDYVHSDLWG 137

The following BLAST results are available for this feature:

BLAST of Cmc08g0235321 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK13826.1	5.6e-141	94.74	putative polyprotein [Cucumis melo var. makuwa]	[more]
TYK25306.1	5.6e-141	94.74	putative gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0050719.1	5.6e-141	94.74	putative gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0047995.1	2.8e-140	93.98	retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa...	[more]
KAA0043826.1	4.0e-139	93.61	putative gag-pol polyprotein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc08g0235321 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.0e-52	42.59	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	7.1e-30	30.63	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	2.4e-25	30.80	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P93293	1.4e-22	47.32	Uncharacterized mitochondrial protein AtMg00300 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q94HW2	1.9e-22	29.55	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]

BLAST of Cmc08g0235321 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DNU1	2.7e-141	94.74	Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A5D3CTV2	2.7e-141	94.74	Putative polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold488...	[more]
A0A5A7UB25	2.7e-141	94.74	Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A5A7U2U7	1.3e-140	93.98	Retrotransposon protein, putative, Ty1-copia sub-class OS=Cucumis melo var. maku...	[more]
A0A5A7TP18	1.9e-139	93.61	Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]

BLAST of Cmc08g0235321 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00300.1	1.0e-23	47.32	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025724	GAG-pre-integrase domain	PFAM	PF13976	gag_pre-integrs	coord: 55..122 e-value: 1.6E-16 score: 59.9
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 130..265 e-value: 5.7E-30 score: 106.1
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 155..236 e-value: 5.1E-10 score: 39.6
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 127..266 score: 18.98317
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 57..260
None	No IPR available	PANTHER	PTHR11439:SF324	RIBONUCLEASE H-LIKE DOMAIN, GAG-PRE-INTEGRASE DOMAIN, GAG-POLYPEPTIDE OF LTR COPIA-TYPE-RELATED	coord: 57..260
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 136..264

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0235321.1	Cmc08g0235321.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding