Cmc08g0235241 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0235241
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	NADH dehydrogenase subunit 4 (Mitochondrion)
Location	CMiso1.1chr08: 31691479 .. 31694713 (+)
RNA-Seq Expression	Cmc08g0235241
Synteny	Cmc08g0235241

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTGGACATGTTTATTATTTAGATAAATTATATGTGTTCCGCATGCTGGATCCTCTACTATTCTATGTTCTTCCCGAAAGCGTGTCAATCCCTATGTTGTGCGAAGCTGAGCATCTTCTATTCGTTGGGATCAAGCTTTTCCTCTGCAGGGGCCTTGTGTAGTAAACCTCCTACGGGCGGTCGTCCGTCGTCGTCAAGTAGTCCCCGCAAAGCTTTTGGGAAGAGGGATAGTCTTGTGTGTAAGCATAGCATTTCTGCTCGAACCCTCCCAACCCAAAATTGAAGAACCGAACCTGACAGACACATCTTTTTCCTTTTGAGAGGGTACGGAGAGTAGTGGGTACCTCGTCAGACCTCAACCCGCCTTGTATGAATATGCAGGAAGGGGACTTATATTTTAGTTTTTAATTTATTTTATATATTTTATGAATCTATCATAATATAATAGAAATATTGAGTCATCTCTCGTATTAGATTTTGAATAAAAAATATAAAATGATTAATAAATAATGTTAAAAAAATAAAAACAATGTCAAAATATTATTTATGCATGCATGTAGAACCAAAATAGAATTTGAGAAAGAGAATAAAAATTTGAAAACATCTCCTTCTCATTTTCAAAATAAATCGTTTTCATTTTAAAATATAGAAAAGTGAATCAACATATCTATAAAATATAACAAAATTTTATAAATTATTTACTAGAAATGGTATCTAAAAATCTAGAAAGTGTATCGATAATGAATGATGTTGAGTTTATTTATAAATTTGAATATATATACAGATAGTAACATGACTTTCGATATAGTTGTTAGTGTAACTGTGCAATTAAATTTGTTTTATGAAGTAAAAATTGGTGATGTTAATCAATGAATATATAGATTCCAGCCAAAATAATGAATAAAGAAATGAATGGACAGCATATCTTTGTTTATAAGATTATTATTGTTATTATTATTATAGAAAAGGGGATGAAGTTGTGAATAATTATTAGTAGATATAGAAGAATAAAGTATAGATTAATTAAAAAGATGAGGATGAAAGCAAACGCTAATGTTACTTTCCAGGAACGTGGGGTTTCTTTCATGGAATGATTTGGTCTCTAATTTCTTCTTTTTCTTTAGAATATATTAATATTCCATTAAATTGGGGGATATACTTTCTACTAAACATAAATATCAACTTTTTCTCTTTAAATTAATCACACTCTAAAACACTTTTTTATTTTCTAATACATATAATAATAATAATAATAATAATAATCTAATCCACTACCTTAACCCTAATTAAAACTCTCTCTACTAAATTAAATATCAATATATATATATATATATATATATATATATATATATATATATATGTATGTATATATCACAATTTTTGAATTGTATTAAAATATCATAACCATATTTACATTATATTTTAAATTTCTCTATATTAATACAATGTGAAACTTATAATATAAATCAATTTAAATTTTTAGTTTTTCCCAAGTGAATCAATTCTTTTTTTATGATTATCTTGAAAATTCATTCATACGCTAATACTCAAATGTGTGTATTTTTTCTTTACGAAATGACAAAACTTGTACTATCGACTATAGAATTAGAAGTTTAATTCTCCATCAAATAAAATGAGATCAATATATATATATAGCATGCTTTTAAAATAGAGGAACCATTCTTGTTAAAAAGAATTTTATACCCTGAAAATGAATAGATAAAGCAATAAATGATAAGAGAGACAAAGATATCCCCTAGCCCTAGATAGGAATTAGGATAAGATAGTGGCCAAATTATTTATATAAATATTTTGTTTAAACTTTTAGAAAAGAGAGATATATAGGAGAATAAGAGAATAATTAAAGAGATATCATGCATAAAGAAAAAGAACAAAGTAATTCAATGGATGAAGCCAAACTCCTTGGTAGAATGGGAGATTAGTAGATTACCCTTTTTTTATTATTCATTTATTTTTAGATATTCAAAATATAGTAAAACATCGTAATTTATAAAATGATAAATTGTAATAGTTTGTGTCTATCTGTTTTATAGATACTTTTAGAATTTTTCATTGATAGATATAGATAGTACTATCTAACATTGTAAAATATTTTACTATTTTTATAGATAATTTTAGAATTCTTTTTTTTTATTTTACTTTGGTTCGTTATAATTTAATCAAAATTGTGAAACAATTTTGCACTCAAATGAAAGAAAGCAACATGATTTACTACGATGACTCTCTTTGGAGAGTATGTGTGTTCCCTTCCCTCTTTTCTTATTCTAAAAGCTAGTCCTGTCCAATATTATTGCTTTAACCATTCAATTGAGTTGATAAACAAATGTATTCTCATATTGTTTGTCACGTCATGTTACACTCCATATAAGTACTAGCTTACCAACAGTATCAACAGTGATGTTGAAAATTGACTATTGAAGTGTTACGTCAATAACCACGTCGTTGAGGATATGATCAGTTAAGAAACAGGTTAGATGCAGTCTCATACAATCTCATTTATTACATAACAAAAATAAATAACAATTTAAAATAAAACTTTCTTACCTTGTGGCATTTTTAATTGAGTAACTAGTGAGCTACACAAAGATAAGTGCAATCCAACCAACACCTCAAAACATTCTTTTATCGTTGATATTCATCACATGGGCATGCATATATATCACTAGTCAACACCTGTCACGATCACTTACCTCGTTCGTAATCTTCTCTCATTTGAACTCCAGCCAATTCATGTTCTACTAGTCATTCTGAAACACTAAAATTGTTAGTAAATATCAATAAATTCAAAATCATCCGAATATTTAGTTTGATTGGAACTCTATAAAGCTAACACTTTTAATGAACCAAACTCCAATATTGTTAATCAGGAAGAGATAATCTGCATCCCAAGGACTAGAGAAACACATAATCAGGGGAATATGTAGGCAAAATAGCTCAAAATGAATCAAAATCAAGAGCTTTGGCCAATAATTTGTTATCTTTTTTGTTATTGGCTTTGCACCCTCAAACCCACCCATCATTAATATTTTGAACTCCCTAAACCTCAGGATGCAGATTACCAGATCCTAACTCAATCATTATACAACTCCATGAAAAGAAAAATGAAGATTTTGAGAAGAATAATAATGATGACAAAATGTGGGAAGTAGTAGAGAAGAGGAGAGAAAAGTACAAGGTCTTGTTGTATTATGATAAGAATTTATAAGGGTTTTTA

mRNA sequence

GGTGGACATGTTTATTATTTAGATAAATTATATGTGTTCCGCATGCTGGATCCTCTACTATTCTATGTTCTTCCCGAAAGCGTGTCAATCCCTATGTTGTGCGAAGCTGAGCATCTTCTATTCGTTGGGATCAAGCTTTTCCTCTGCAGGGGCCTTGTGTAGTAAACCTCCTACGGGCGGTCGTCCGTCGTCGTCAAGTAGTCCCCGCAAAGCTTTTGGGAAGAGGGATAGTCTTGTGTGTAAGCATAGCATTTCTGCTCGAACCCTCCCAACCCAAAATTGAAGAACCGAACCTGACAGACACATCTTTTTCCTTTTGAGAGGGTACGGAGAGTAGTGGGTACCTCGTCAGACCTCAACCCGCCTTGTATGAATATGCAGGAAGGGGACTTATATTTTAGTTTTTAATTTATTTTATATATTTTATGAATCTATCATAATATAATAGAAATATTGAGTCATCTCTCGTATTAGATTTTGAATAAAAAATATAAAATGATTAATAAATAATGTTAAAAAAATAAAAACAATGTCAAAATATTATTTATGCATGCATGTAGAACCAAAATAGAATTTGAGAAAGAGAATAAAAATTTGAAAACATCTCCTTCTCATTTTCAAAATAAATCGTTTTCATTTTAAAATATAGAAAAGTGAATCAACATATCTATAAAATATAACAAAATTTTATAAATTATTTACTAGAAATGGTATCTAAAAATCTAGAAAGTGTATCGATAATGAATGATGTTGAGTTTATTTATAAATTTGAATATATATACAGATAGTAACATGACTTTCGATATAGTTGTTAGTGTAACTGTGCAATTAAATTTGTTTTATGAAGTAAAAATTGGTGATGTTAATCAATGAATATATAGATTCCAGCCAAAATAATGAATAAAGAAATGAATGGACAGCATATCTTTGTTTATAAGATTATTATTGTTATTATTATTATAGAAAAGGGGATGAAGTTGTGAATAATTATTAGTAGATATAGAAGAATAAAGTATAGATTAATTAAAAAGATGAGGATGAAAGCAAACGCTAATGTTACTTTCCAGGAACGTGGGGTTTCTTTCATGGAATGATTTGGTCTCTAATTTCTTCTTTTTCTTTAGAATATATTAATATTCCATTAAATTGGGGGATATACTTTCTACTAAACATAAATATCAACTTTTTCTCTTTAAATTAATCACACTCTAAAACACTTTTTTATTTTCTAATACATATAATAATAATAATAATAATAATAATCTAATCCACTACCTTAACCCTAATTAAAACTCTCTCTACTAAATTAAATATCAATATATATATATATATATATATATATATATATATATATATATATGTATGTATATATCACAATTTTTGAATTGTATTAAAATATCATAACCATATTTACATTATATTTTAAATTTCTCTATATTAATACAATGTGAAACTTATAATATAAATCAATTTAAATTTTTAGTTTTTCCCAAGTGAATCAATTCTTTTTTTATGATTATCTTGAAAATTCATTCATACGCTAATACTCAAATGTGTGTATTTTTTCTTTACGAAATGACAAAACTTGTACTATCGACTATAGAATTAGAAGTTTAATTCTCCATCAAATAAAATGAGATCAATATATATATATAGCATGCTTTTAAAATAGAGGAACCATTCTTGTTAAAAAGAATTTTATACCCTGAAAATGAATAGATAAAGCAATAAATGATAAGAGAGACAAAGATATCCCCTAGCCCTAGATAGGAATTAGGATAAGATAGTGGCCAAATTATTTATATAAATATTTTGTTTAAACTTTTAGAAAAGAGAGATATATAGGAGAATAAGAGAATAATTAAAGAGATATCATGCATAAAGAAAAAGAACAAAGTAATTCAATGGATGAAGCCAAACTCCTTGGTAGAATGGGAGATTAGTAGATTACCCTTTTTTTATTATTCATTTATTTTTAGATATTCAAAATATAGTAAAACATCGTAATTTATAAAATGATAAATTGTAATAGTTTGTGTCTATCTGTTTTATAGATACTTTTAGAATTTTTCATTGATAGATATAGATAGTACTATCTAACATTGTAAAATATTTTACTATTTTTATAGATAATTTTAGAATTCTTTTTTTTTATTTTACTTTGGTTCGTTATAATTTAATCAAAATTGTGAAACAATTTTGCACTCAAATGAAAGAAAGCAACATGATTTACTACGATGACTCTCTTTGGAGAGTATGTGTGTTCCCTTCCCTCTTTTCTTATTCTAAAAGCTAGTCCTGTCCAATATTATTGCTTTAACCATTCAATTGAGTTGATAAACAAATGTATTCTCATATTGTTTGTCACGTCATGTTACACTCCATATAAGTACTAGCTTACCAACAGTATCAACAGTGATGTTGAAAATTGACTATTGAAGTGTTACGTCAATAACCACGTCGTTGAGGATATGATCAGTTAAGAAACAGGTTAGATGCAGTCTCATACAATCTCATTTATTACATAACAAAAATAAATAACAATTTAAAATAAAACTTTCTTACCTTGTGGCATTTTTAATTGAGTAACTAGTGAGCTACACAAAGATAAGTGCAATCCAACCAACACCTCAAAACATTCTTTTATCGTTGATATTCATCACATGGGCATGCATATATATCACTAGTCAACACCTGTCACGATCACTTACCTCGTTCGTAATCTTCTCTCATTTGAACTCCAGCCAATTCATGTTCTACTAGTCATTCTGAAACACTAAAATTGTTAGTAAATATCAATAAATTCAAAATCATCCGAATATTTAGTTTGATTGGAACTCTATAAAGCTAACACTTTTAATGAACCAAACTCCAATATTGTTAATCAGGAAGAGATAATCTGCATCCCAAGGACTAGAGAAACACATAATCAGGGGAATATGTAGGCAAAATAGCTCAAAATGAATCAAAATCAAGAGCTTTGGCCAATAATTTGTTATCTTTTTTGTTATTGGCTTTGCACCCTCAAACCCACCCATCATTAATATTTTGAACTCCCTAAACCTCAGGATGCAGATTACCAGATCCTAACTCAATCATTATACAACTCCATGAAAAGAAAAATGAAGATTTTGAGAAGAATAATAATGATGACAAAATGTGGGAAGTAGTAGAGAAGAGGAGAGAAAAGTACAAGGTCTTGTTGTATTATGATAAGAATTTATAAGGGTTTTTA

Coding sequence (CDS)

ATGTGTTCCGCATGCTGGATCCTCTACTATTCTATGTTCTTCCCGAAAGCGTGTCAATCCCTATGTTGTGCGAAGCTGAGCATCTTCTATTCGTTGGGATCAAGCTTTTCCTCTGCAGGGGCCTTGTGTAGTAAACCTCCTACGGGCGGTCGTCCGTCGTCGTCAAGTAGTCCCCGCAAAGCTTTTGGGAAGAGGGATAGTCTTGTGTGTAAGCATAGCATTTCTGCTCGAACCCTCCCAACCCAAAATTGA

Protein sequence

MCSACWILYYSMFFPKACQSLCCAKLSIFYSLGSSFSSAGALCSKPPTGGRPSSSSSPRKAFGKRDSLVCKHSISARTLPTQN

Homology

[Close]

BLAST of Cmc08g0235241 vs. NCBI nr
Match: KAA0033212.1 (NADH dehydrogenase subunit 4 [Cucumis melo var. makuwa])

HSP 1 Score: 108.2 bits (269), Expect = 3.4e-20
Identity = 55/58 (94.83%), Postives = 57/58 (98.28%), Query Frame = 0


Query: 12 MFFPKACQSLCCAKLSIFYSLGSSFSSAGALCSKPPTGGRPSSSSSPRKAFGKRDSLV 70
          MFFPKACQSLCCA+LSIFYSLGSSFSSAGALCSKPPTGGRPSSSSSPR+AFGKR SLV
Sbjct: 1  MFFPKACQSLCCAELSIFYSLGSSFSSAGALCSKPPTGGRPSSSSSPREAFGKRGSLV 58

[Close]

BLAST of Cmc08g0235241 vs. NCBI nr
Match: PHU22579.1 (NADH-ubiquinone oxidoreductase chain 4 [Capsicum chinense])

HSP 1 Score: 54.7 bits (130), Expect = 4.5e-04
Identity = 27/30 (90.00%), Postives = 28/30 (93.33%), Query Frame = 0


Query: 40  GALCSKPPTGGRPSSSSSPRKAFGKRDSLV 70
           GALCSKPPTGGRPSS SSPR+AFGKR SLV
Sbjct: 114 GALCSKPPTGGRPSSYSSPREAFGKRGSLV 143

[Close]

BLAST of Cmc08g0235241 vs. ExPASy TrEMBL
Match: A0A5A7SPU7 (NADH dehydrogenase subunit 4 (Mitochondrion) OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46212G00030 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.6e-20
Identity = 55/58 (94.83%), Postives = 57/58 (98.28%), Query Frame = 0


Query: 12 MFFPKACQSLCCAKLSIFYSLGSSFSSAGALCSKPPTGGRPSSSSSPRKAFGKRDSLV 70
          MFFPKACQSLCCA+LSIFYSLGSSFSSAGALCSKPPTGGRPSSSSSPR+AFGKR SLV
Sbjct: 1  MFFPKACQSLCCAELSIFYSLGSSFSSAGALCSKPPTGGRPSSSSSPREAFGKRGSLV 58

[Close]

BLAST of Cmc08g0235241 vs. ExPASy TrEMBL
Match: A0A2G3CV42 (NADH-ubiquinone oxidoreductase chain 4 OS=Capsicum chinense OX=80379 GN=BC332_07686 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.2e-04
Identity = 27/30 (90.00%), Postives = 28/30 (93.33%), Query Frame = 0


Query: 40  GALCSKPPTGGRPSSSSSPRKAFGKRDSLV 70
           GALCSKPPTGGRPSS SSPR+AFGKR SLV
Sbjct: 114 GALCSKPPTGGRPSSYSSPREAFGKRGSLV 143

The following BLAST results are available for this feature:

BLAST of Cmc08g0235241 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0033212.1	3.4e-20	94.83	NADH dehydrogenase subunit 4 [Cucumis melo var. makuwa]	[more]
PHU22579.1	4.5e-04	90.00	NADH-ubiquinone oxidoreductase chain 4 [Capsicum chinense]	[more]

BLAST of Cmc08g0235241 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc08g0235241 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SPU7	1.6e-20	94.83	NADH dehydrogenase subunit 4 (Mitochondrion) OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A2G3CV42	2.2e-04	90.00	NADH-ubiquinone oxidoreductase chain 4 OS=Capsicum chinense OX=80379 GN=BC332_07...	[more]

BLAST of Cmc08g0235241 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..66
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..61

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0235241.1	Cmc08g0235241.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042773	ATP synthesis coupled electron transport
cellular_component	GO:0016020	membrane
cellular_component	GO:0009536	plastid
molecular_function	GO:0008137	NADH dehydrogenase (ubiquinone) activity