Cmc08g0235031 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0235031
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr08: 31586246 .. 31586551 (-)
RNA-Seq Expression	Cmc08g0235031
Synteny	Cmc08g0235031

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTACTTACAAGAGATCTGATCATCTTGAGGTGATTGGATATTCAGATTTTGCCGGATGTGTGGATACAAGAAAATCCACTTTTGGCTATTTGTTCATGTTAGCTGAAGGAGCAATTTCATGGAAAAATGCAAAGCAGTCTATTATCGCTGCATCCACTACGGAAGCTGAATTTGTAGCATGCTTTAAGGCTACCGTTTATGGTTTATGGCTGCGGAACTTTATCTTAGGACTTGGAATTATCGACAGTATTGCCAAGCTGCTGAGAATTTATTGTGATAATTTTGCAGCAGTTTTCTTCTAA

mRNA sequence

ATGCTTACTTACAAGAGATCTGATCATCTTGAGGTGATTGGATATTCAGATTTTGCCGGATGTGTGGATACAAGAAAATCCACTTTTGGCTATTTGTTCATGTTAGCTGAAGGAGCAATTTCATGGAAAAATGCAAAGCAGTCTATTATCGCTGCATCCACTACGGAAGCTGAATTTGTAGCATGCTTTAAGGCTACCGTTTATGGTTTATGGCTGCGGAACTTTATCTTAGGACTTGGAATTATCGACAGTATTGCCAAGCTGCTGAGAATTTATTGTGATAATTTTGCAGCAGTTTTCTTCTAA

Coding sequence (CDS)

ATGCTTACTTACAAGAGATCTGATCATCTTGAGGTGATTGGATATTCAGATTTTGCCGGATGTGTGGATACAAGAAAATCCACTTTTGGCTATTTGTTCATGTTAGCTGAAGGAGCAATTTCATGGAAAAATGCAAAGCAGTCTATTATCGCTGCATCCACTACGGAAGCTGAATTTGTAGCATGCTTTAAGGCTACCGTTTATGGTTTATGGCTGCGGAACTTTATCTTAGGACTTGGAATTATCGACAGTATTGCCAAGCTGCTGAGAATTTATTGTGATAATTTTGCAGCAGTTTTCTTCTAA

Protein sequence

MLTYKRSDHLEVIGYSDFAGCVDTRKSTFGYLFMLAEGAISWKNAKQSIIAASTTEAEFVACFKATVYGLWLRNFILGLGIIDSIAKLLRIYCDNFAAVFF

Homology

[Close]

BLAST of Cmc08g0235031 vs. NCBI nr
Match: KAA0045170.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK23568.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 206.1 bits (523), Expect = 1.5e-49
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0


Query: 1   MLTYKRSDHLEVIGYSDFAGCVDTRKSTFGYLFMLAEGAISWKNAKQSIIAASTTEAEFV 60
           MLTYKRSDHLEVIGYSDFAGCVDTRKSTFGYLFMLAEGAISWKNAKQSIIAASTTEAEFV
Sbjct: 1   MLTYKRSDHLEVIGYSDFAGCVDTRKSTFGYLFMLAEGAISWKNAKQSIIAASTTEAEFV 60

Query: 61  ACFKATVYGLWLRNFILGLGIIDSIAKLLRIYCDNFAAVFF 102
           ACFKATVYGLWLRNFILGLGIIDSIAKLLRIYCDNFAAVFF
Sbjct: 61  ACFKATVYGLWLRNFILGLGIIDSIAKLLRIYCDNFAAVFF 101

[Close]

BLAST of Cmc08g0235031 vs. NCBI nr
Match: KAA0051161.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 181.4 bits (459), Expect = 3.8e-42
Identity = 91/103 (88.35%), Postives = 96/103 (93.20%), Query Frame = 0


Query: 1   MLTYKRSDHLEVIGY--SDFAGCVDTRKSTFGYLFMLAEGAISWKNAKQSIIAASTTEAE 60
           MLTYKRSDHLEVIGY  SDFAGCVDTRKSTFGYLF+LAEGAISWK+AKQSIIAAS  EAE
Sbjct: 60  MLTYKRSDHLEVIGYSDSDFAGCVDTRKSTFGYLFLLAEGAISWKSAKQSIIAASIMEAE 119

Query: 61  FVACFKATVYGLWLRNFILGLGIIDSIAKLLRIYCDNFAAVFF 102
           FVACF+ATV+GLWLRNFI GLGI+DSIAK LRIYCDN AAVFF
Sbjct: 120 FVACFEATVHGLWLRNFISGLGIVDSIAKPLRIYCDNSAAVFF 162

[Close]

BLAST of Cmc08g0235031 vs. NCBI nr
Match: KAA0061426.1 (F-box/FBD/LRR-repeat protein [Cucumis melo var. makuwa])

HSP 1 Score: 180.3 bits (456), Expect = 8.6e-42
Identity = 88/103 (85.44%), Postives = 96/103 (93.20%), Query Frame = 0


Query: 1   MLTYKRSDHLEVIGY--SDFAGCVDTRKSTFGYLFMLAEGAISWKNAKQSIIAASTTEAE 60
           MLTYKRSDHLEVIGY  SDFAGCVDTRKSTFGYLF+LAEGAISW++AKQSII AS+ EAE
Sbjct: 60  MLTYKRSDHLEVIGYSDSDFAGCVDTRKSTFGYLFLLAEGAISWRSAKQSIIGASSMEAE 119

Query: 61  FVACFKATVYGLWLRNFILGLGIIDSIAKLLRIYCDNFAAVFF 102
           FVACF+ATV+GLWLRNFI GLGI+DSIAKLLRIYCDN  A+FF
Sbjct: 120 FVACFEATVHGLWLRNFISGLGIVDSIAKLLRIYCDNSTAIFF 162

[Close]

BLAST of Cmc08g0235031 vs. NCBI nr
Match: KAA0038076.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK20529.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 179.9 bits (455), Expect = 1.1e-41
Identity = 91/103 (88.35%), Postives = 95/103 (92.23%), Query Frame = 0


Query: 1   MLTYKRSDHLEVIGY--SDFAGCVDTRKSTFGYLFMLAEGAISWKNAKQSIIAASTTEAE 60
           MLTYKRSDHLEVI Y  SDFAGCVDTRKSTFGYLFMLAE  ISWK+AKQSIIAAST EAE
Sbjct: 173 MLTYKRSDHLEVIRYSNSDFAGCVDTRKSTFGYLFMLAEEVISWKSAKQSIIAASTMEAE 232

Query: 61  FVACFKATVYGLWLRNFILGLGIIDSIAKLLRIYCDNFAAVFF 102
           FVACF+ATV+GLWLRNFI GLGI+DSIAKLLRIYCDN AAVFF
Sbjct: 233 FVACFEATVHGLWLRNFISGLGIVDSIAKLLRIYCDNSAAVFF 275

[Close]

BLAST of Cmc08g0235031 vs. NCBI nr
Match: TYK04469.1 (copia-like pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 179.1 bits (453), Expect = 1.9e-41
Identity = 90/103 (87.38%), Postives = 94/103 (91.26%), Query Frame = 0


Query: 1   MLTYKRSDHLEVIGY--SDFAGCVDTRKSTFGYLFMLAEGAISWKNAKQSIIAASTTEAE 60
           MLTYKRSDHLEVIGY  SDF GCVDTRKSTFGYLF+LAEGAISWK+AKQSIIAAST E E
Sbjct: 695 MLTYKRSDHLEVIGYSDSDFLGCVDTRKSTFGYLFLLAEGAISWKSAKQSIIAASTMEVE 754

Query: 61  FVACFKATVYGLWLRNFILGLGIIDSIAKLLRIYCDNFAAVFF 102
           FVACF+ATV+GLWLRNFI GLGIIDSI K LRIYCDN AAVFF
Sbjct: 755 FVACFEATVHGLWLRNFISGLGIIDSIVKPLRIYCDNSAAVFF 797

[Close]

BLAST of Cmc08g0235031 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.1e-11
Identity = 35/84 (41.67%), Postives = 53/84 (63.10%), Query Frame = 0


Query: 16   SDFAGCVDTRKSTFGYLFMLAEGAISWKNAKQSIIAASTTEAEFVACFKATVYGLWLRNF 75
            +D AG +D RKS+ GYLF  + GAISW++  Q  +A STTEAE++A  +     +WL+ F
Sbjct: 1181 ADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWLKRF 1240

Query: 76   ILGLGIIDSIAKLLRIYCDNFAAV 100
            +  LG+     K   +YCD+ +A+
Sbjct: 1241 LQELGLHQ---KEYVVYCDSQSAI 1261

[Close]

BLAST of Cmc08g0235031 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.1e-10
Identity = 32/73 (43.84%), Postives = 50/73 (68.49%), Query Frame = 0


Query: 2   LTYKRSDHLEVIGYS--DFAGCVDTRKSTFGYLFMLAEGAISWKNAKQSIIAASTTEAEF 61
           L + R+   +++GYS  D+AG V++R+ST GYLF L  G +SW++ KQ  +A S+TE E+
Sbjct: 61  LEFTRAGTAKLVGYSDADWAGDVESRRSTSGYLFKLNGGCVSWRSKKQRTVALSSTEDEY 120

Query: 62  VACFKATVYGLWL 73
           +A  +AT   +WL
Sbjct: 121 MALSEATQEAVWL 133

[Close]

BLAST of Cmc08g0235031 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 62.4 bits (150), Expect = 3.4e-09
Identity = 36/88 (40.91%), Postives = 54/88 (61.36%), Query Frame = 0


Query: 11   EVIGY--SDFAGCVDTRKSTFGYLFMLAE-GAISWKNAKQSIIAASTTEAEFVACFKATV 70
            ++IGY  SD+AG    RKST GYLF + +   I W   +Q+ +AAS+TEAE++A F+A  
Sbjct: 1247 KIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVR 1306

Query: 71   YGLWLRNFILGLGIIDSIAKLLRIYCDN 96
              LWL+  +  + I   +   ++IY DN
Sbjct: 1307 EALWLKFLLTSINI--KLENPIKIYEDN 1332

[Close]

BLAST of Cmc08g0235031 vs. ExPASy TrEMBL
Match: A0A5D3DJB4 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G00760 PE=4 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 7.1e-50
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0


Query: 1   MLTYKRSDHLEVIGYSDFAGCVDTRKSTFGYLFMLAEGAISWKNAKQSIIAASTTEAEFV 60
           MLTYKRSDHLEVIGYSDFAGCVDTRKSTFGYLFMLAEGAISWKNAKQSIIAASTTEAEFV
Sbjct: 1   MLTYKRSDHLEVIGYSDFAGCVDTRKSTFGYLFMLAEGAISWKNAKQSIIAASTTEAEFV 60

Query: 61  ACFKATVYGLWLRNFILGLGIIDSIAKLLRIYCDNFAAVFF 102
           ACFKATVYGLWLRNFILGLGIIDSIAKLLRIYCDNFAAVFF
Sbjct: 61  ACFKATVYGLWLRNFILGLGIIDSIAKLLRIYCDNFAAVFF 101

[Close]

BLAST of Cmc08g0235031 vs. ExPASy TrEMBL
Match: A0A5A7UCB2 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold511G001140 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 1.9e-42
Identity = 91/103 (88.35%), Postives = 96/103 (93.20%), Query Frame = 0


Query: 1   MLTYKRSDHLEVIGY--SDFAGCVDTRKSTFGYLFMLAEGAISWKNAKQSIIAASTTEAE 60
           MLTYKRSDHLEVIGY  SDFAGCVDTRKSTFGYLF+LAEGAISWK+AKQSIIAAS  EAE
Sbjct: 60  MLTYKRSDHLEVIGYSDSDFAGCVDTRKSTFGYLFLLAEGAISWKSAKQSIIAASIMEAE 119

Query: 61  FVACFKATVYGLWLRNFILGLGIIDSIAKLLRIYCDNFAAVFF 102
           FVACF+ATV+GLWLRNFI GLGI+DSIAK LRIYCDN AAVFF
Sbjct: 120 FVACFEATVHGLWLRNFISGLGIVDSIAKPLRIYCDNSAAVFF 162

[Close]

BLAST of Cmc08g0235031 vs. ExPASy TrEMBL
Match: A0A5A7V4M2 (F-box/FBD/LRR-repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1041G00040 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 4.1e-42
Identity = 88/103 (85.44%), Postives = 96/103 (93.20%), Query Frame = 0


Query: 1   MLTYKRSDHLEVIGY--SDFAGCVDTRKSTFGYLFMLAEGAISWKNAKQSIIAASTTEAE 60
           MLTYKRSDHLEVIGY  SDFAGCVDTRKSTFGYLF+LAEGAISW++AKQSII AS+ EAE
Sbjct: 60  MLTYKRSDHLEVIGYSDSDFAGCVDTRKSTFGYLFLLAEGAISWRSAKQSIIGASSMEAE 119

Query: 61  FVACFKATVYGLWLRNFILGLGIIDSIAKLLRIYCDNFAAVFF 102
           FVACF+ATV+GLWLRNFI GLGI+DSIAKLLRIYCDN  A+FF
Sbjct: 120 FVACFEATVHGLWLRNFISGLGIVDSIAKLLRIYCDNSTAIFF 162

[Close]

BLAST of Cmc08g0235031 vs. ExPASy TrEMBL
Match: A0A5D3DAK2 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold237G001120 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 5.4e-42
Identity = 91/103 (88.35%), Postives = 95/103 (92.23%), Query Frame = 0


Query: 1   MLTYKRSDHLEVIGY--SDFAGCVDTRKSTFGYLFMLAEGAISWKNAKQSIIAASTTEAE 60
           MLTYKRSDHLEVI Y  SDFAGCVDTRKSTFGYLFMLAE  ISWK+AKQSIIAAST EAE
Sbjct: 173 MLTYKRSDHLEVIRYSNSDFAGCVDTRKSTFGYLFMLAEEVISWKSAKQSIIAASTMEAE 232

Query: 61  FVACFKATVYGLWLRNFILGLGIIDSIAKLLRIYCDNFAAVFF 102
           FVACF+ATV+GLWLRNFI GLGI+DSIAKLLRIYCDN AAVFF
Sbjct: 233 FVACFEATVHGLWLRNFISGLGIVDSIAKLLRIYCDNSAAVFF 275

[Close]

BLAST of Cmc08g0235031 vs. ExPASy TrEMBL
Match: A0A5D3C256 (Copia-like pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G00760 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 9.2e-42
Identity = 90/103 (87.38%), Postives = 94/103 (91.26%), Query Frame = 0


Query: 1   MLTYKRSDHLEVIGY--SDFAGCVDTRKSTFGYLFMLAEGAISWKNAKQSIIAASTTEAE 60
           MLTYKRSDHLEVIGY  SDF GCVDTRKSTFGYLF+LAEGAISWK+AKQSIIAAST E E
Sbjct: 695 MLTYKRSDHLEVIGYSDSDFLGCVDTRKSTFGYLFLLAEGAISWKSAKQSIIAASTMEVE 754

Query: 61  FVACFKATVYGLWLRNFILGLGIIDSIAKLLRIYCDNFAAVFF 102
           FVACF+ATV+GLWLRNFI GLGIIDSI K LRIYCDN AAVFF
Sbjct: 755 FVACFEATVHGLWLRNFISGLGIIDSIVKPLRIYCDNSAAVFF 797

[Close]

BLAST of Cmc08g0235031 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 43.9 bits (102), Expect = 8.9e-05
Identity = 20/46 (43.48%), Postives = 28/46 (60.87%), Query Frame = 0


Query: 16  SDFAGCVDTRKSTFGYLFMLAEGAISWKNAKQSIIAASTTEAEFVA 62
           SD+AGC  TR+ST G+   L    ISW   +Q  ++ S+TE E+ A
Sbjct: 170 SDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRA 215

The following BLAST results are available for this feature:

BLAST of Cmc08g0235031 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0045170.1	1.5e-49	100.00	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0051161.1	3.8e-42	88.35	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0061426.1	8.6e-42	85.44	F-box/FBD/LRR-repeat protein [Cucumis melo var. makuwa]	[more]
KAA0038076.1	1.1e-41	88.35	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK04469.1	1.9e-41	87.38	copia-like pol polyprotein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc08g0235031 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	2.1e-11	41.67	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P0CV72	3.1e-10	43.84	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]
P04146	3.4e-09	40.91	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]

BLAST of Cmc08g0235031 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DJB4	7.1e-50	100.00	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7UCB2	1.9e-42	88.35	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7V4M2	4.1e-42	85.44	F-box/FBD/LRR-repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A5D3DAK2	5.4e-42	88.35	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3C256	9.2e-42	87.38	Copia-like pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]

BLAST of Cmc08g0235031 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00810.1	8.9e-05	43.48	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 13..99 e-value: 1.69051E-32 score: 108.324

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0235031.1	Cmc08g0235031.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding