Cmc08g0234761 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0234761
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr08: 31413187 .. 31413570 (+)
RNA-Seq Expression	Cmc08g0234761
Synteny	Cmc08g0234761

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTGTGGTTTATTTGCATGAGTCAGAATTTGACTTAAGCATTGACAATGATCTGGTTTCGTTTTCACAAGCCATTAAAAGAGATAATTCTGCCAAATGGTTAGATGCCATGAAAGAAGAGTTAAAATCTATGAATGATAATGAAGTCTGGGATCTTGTAGAATTTCCTAAAGAAAGTAAAAGAGTTGGATGTAAATGGGTCTTTAAGACCAAACGTGACTCAAATGACAATACCAAACGATATAAGACTAGACTTGTTGCCAAAGGTTATACTCAGAAAGATGACATTGACTACAAAGAGACCTTTTCTCCTGTCTCGAAAAAAGACTTATTAAGAATTATTATGGCTTTGGTAACTCATTATAATTTAGAGCTTCATTAA

mRNA sequence

ATGACTGTGGTTTATTTGCATGAGTCAGAATTTGACTTAAGCATTGACAATGATCTGGTTTCGTTTTCACAAGCCATTAAAAGAGATAATTCTGCCAAATGGTTAGATGCCATGAAAGAAGAGTTAAAATCTATGAATGATAATGAAGTCTGGGATCTTGTAGAATTTCCTAAAGAAAGTAAAAGAGTTGGATGTAAATGGGTCTTTAAGACCAAACGTGACTCAAATGACAATACCAAACGATATAAGACTAGACTTGTTGCCAAAGGTTATACTCAGAAAGATGACATTGACTACAAAGAGACCTTTTCTCCTGTCTCGAAAAAAGACTTATTAAGAATTATTATGGCTTTGGTAACTCATTATAATTTAGAGCTTCATTAA

Coding sequence (CDS)

ATGACTGTGGTTTATTTGCATGAGTCAGAATTTGACTTAAGCATTGACAATGATCTGGTTTCGTTTTCACAAGCCATTAAAAGAGATAATTCTGCCAAATGGTTAGATGCCATGAAAGAAGAGTTAAAATCTATGAATGATAATGAAGTCTGGGATCTTGTAGAATTTCCTAAAGAAAGTAAAAGAGTTGGATGTAAATGGGTCTTTAAGACCAAACGTGACTCAAATGACAATACCAAACGATATAAGACTAGACTTGTTGCCAAAGGTTATACTCAGAAAGATGACATTGACTACAAAGAGACCTTTTCTCCTGTCTCGAAAAAAGACTTATTAAGAATTATTATGGCTTTGGTAACTCATTATAATTTAGAGCTTCATTAA

Protein sequence

MTVVYLHESEFDLSIDNDLVSFSQAIKRDNSAKWLDAMKEELKSMNDNEVWDLVEFPKESKRVGCKWVFKTKRDSNDNTKRYKTRLVAKGYTQKDDIDYKETFSPVSKKDLLRIIMALVTHYNLELH

Homology

[Close]

BLAST of Cmc08g0234761 vs. NCBI nr
Match: KAA0031640.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 226.1 bits (575), Expect = 1.7e-55
Identity = 112/125 (89.60%), Postives = 116/125 (92.80%), Query Frame = 0


Query: 3   VVYLHESEFDLSIDNDLVSFSQAIKRDNSAKWLDAMKEELKSMNDNEVWDLVEFPKESKR 62
           +VY HESEFDLSIDND VSFSQ IKRDNS KWLDAMKEELKSMNDNEVWDLVEFPKESKR
Sbjct: 341 LVYWHESEFDLSIDNDPVSFSQVIKRDNSTKWLDAMKEELKSMNDNEVWDLVEFPKESKR 400

Query: 63  VGCKWVFKTKRDSNDNTKRYKTRLVAKGYTQKDDIDYKETFSPVSKKDLLRIIMALVTHY 122
           VGCKWVFKTKRDSN N +RYK RLVAKGYTQKDDIDYKETFSPVSKKD LRIIMALV HY
Sbjct: 401 VGCKWVFKTKRDSNGNIERYKARLVAKGYTQKDDIDYKETFSPVSKKDSLRIIMALVAHY 460

Query: 123 NLELH 128
           +LEL+
Sbjct: 461 DLELY 465

[Close]

BLAST of Cmc08g0234761 vs. NCBI nr
Match: TYK04469.1 (copia-like pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 221.1 bits (562), Expect = 5.5e-54
Identity = 110/125 (88.00%), Postives = 114/125 (91.20%), Query Frame = 0


Query: 3   VVYLHESEFDLSIDNDLVSFSQAIKRDNSAKWLDAMKEELKSMNDNEVWDLVEFPKESKR 62
           +VY HESEFDLSIDND VSFSQ IKRDNS KWLDAMKEELKSMNDNEVWDLVE PKESKR
Sbjct: 493 LVYWHESEFDLSIDNDPVSFSQVIKRDNSTKWLDAMKEELKSMNDNEVWDLVELPKESKR 552

Query: 63  VGCKWVFKTKRDSNDNTKRYKTRLVAKGYTQKDDIDYKETFSPVSKKDLLRIIMALVTHY 122
           VGCKWVFKTKRDSN N +RYK RLVAKGYTQKD IDYKETFSPVSKKD LRIIMALV HY
Sbjct: 553 VGCKWVFKTKRDSNGNIERYKARLVAKGYTQKDGIDYKETFSPVSKKDSLRIIMALVAHY 612

Query: 123 NLELH 128
           +LEL+
Sbjct: 613 DLELY 617

[Close]

BLAST of Cmc08g0234761 vs. NCBI nr
Match: KAA0047436.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYJ98630.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 220.3 bits (560), Expect = 9.4e-54
Identity = 109/125 (87.20%), Postives = 113/125 (90.40%), Query Frame = 0


Query: 3   VVYLHESEFDLSIDNDLVSFSQAIKRDNSAKWLDAMKEELKSMNDNEVWDLVEFPKESKR 62
           +VYLHESEFDLSIDND VSFSQAIK DNS KWLDAMKEELKS NDNEVWD VE PKESKR
Sbjct: 137 LVYLHESEFDLSIDNDPVSFSQAIKGDNSTKWLDAMKEELKSTNDNEVWDFVELPKESKR 196

Query: 63  VGCKWVFKTKRDSNDNTKRYKTRLVAKGYTQKDDIDYKETFSPVSKKDLLRIIMALVTHY 122
           +GCKWVFKTKRDSN N +RYK RLVAKGYTQKD IDYKETFSPVSKKD LRIIMALV HY
Sbjct: 197 IGCKWVFKTKRDSNGNIERYKARLVAKGYTQKDGIDYKETFSPVSKKDSLRIIMALVAHY 256

Query: 123 NLELH 128
           +LELH
Sbjct: 257 DLELH 261

[Close]

BLAST of Cmc08g0234761 vs. NCBI nr
Match: KAA0061857.1 (copia-like pol polyprotein [Cucumis melo var. makuwa] >TYK15399.1 copia-like pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 219.9 bits (559), Expect = 1.2e-53
Identity = 108/125 (86.40%), Postives = 115/125 (92.00%), Query Frame = 0


Query: 3   VVYLHESEFDLSIDNDLVSFSQAIKRDNSAKWLDAMKEELKSMNDNEVWDLVEFPKESKR 62
           +VYLHESEFDLSIDND VSFSQAIK DNS KWLDAMKEELKSMNDNEVWDLVE PKESKR
Sbjct: 455 LVYLHESEFDLSIDNDPVSFSQAIKVDNSTKWLDAMKEELKSMNDNEVWDLVELPKESKR 514

Query: 63  VGCKWVFKTKRDSNDNTKRYKTRLVAKGYTQKDDIDYKETFSPVSKKDLLRIIMALVTHY 122
           VGCKWVF+TKRDSN N +RYK RLVAKGYTQKD IDYKETFSPVSKKD LRIIMAL+ HY
Sbjct: 515 VGCKWVFETKRDSNGNIERYKARLVAKGYTQKDGIDYKETFSPVSKKDSLRIIMALIAHY 574

Query: 123 NLELH 128
           +L++H
Sbjct: 575 DLKIH 579

[Close]

BLAST of Cmc08g0234761 vs. NCBI nr
Match: TYK04201.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 219.5 bits (558), Expect = 1.6e-53
Identity = 110/125 (88.00%), Postives = 114/125 (91.20%), Query Frame = 0


Query: 3   VVYLHESEFDLSIDNDLVSFSQAIKRDNSAKWLDAMKEELKSMNDNEVWDLVEFPKESKR 62
           +VYLHESEFDLSIDND VSFSQAIK DNS KWLDAMKEELKSMNDNEVWDLVE PK+SKR
Sbjct: 506 LVYLHESEFDLSIDNDPVSFSQAIKGDNSTKWLDAMKEELKSMNDNEVWDLVELPKKSKR 565

Query: 63  VGCKWVFKTKRDSNDNTKRYKTRLVAKGYTQKDDIDYKETFSPVSKKDLLRIIMALVTHY 122
           VGCKWVFKTKRDSN N +R K RLVAKGYTQKD IDYKETFSPVSKKD LRIIMALV HY
Sbjct: 566 VGCKWVFKTKRDSNGNIERCKARLVAKGYTQKDGIDYKETFSPVSKKDSLRIIMALVAHY 625

Query: 123 NLELH 128
           +LELH
Sbjct: 626 DLELH 630

[Close]

BLAST of Cmc08g0234761 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 90.5 bits (223), Expect = 1.5e-17
Identity = 47/115 (40.87%), Postives = 70/115 (60.87%), Query Frame = 0


Query: 14  SIDNDLV-SFSQAIKRDNSAKWLDAMKEELKSMNDNEVWDLVEFPKESKRVGCKWVFKTK 73
           +I ND+  SF +   RD+ + W +A+  EL +   N  W + + P+    V  +WVF  K
Sbjct: 885 TIFNDVPNSFDEIQYRDDKSSWEEAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVK 944

Query: 74  RDSNDNTKRYKTRLVAKGYTQKDDIDYKETFSPVSKKDLLRIIMALVTHYNLELH 128
            +   N  RYK RLVA+G+TQK  IDY+ETF+PV++    R I++LV  YNL++H
Sbjct: 945 YNELGNPIRYKARLVARGFTQKYQIDYEETFAPVARISSFRFILSLVIQYNLKVH 999

[Close]

BLAST of Cmc08g0234761 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.2e-16
Identity = 45/114 (39.47%), Postives = 67/114 (58.77%), Query Frame = 0


Query: 13  LSIDNDLVSFSQAIKRDNSAKWLDAMKEELKSMNDNEVWDLVEFPKESKRVGCKWVFKTK 72
           +S D +  S  + +      + + AM+EE++S+  N  + LVE PK  + + CKWVFK K
Sbjct: 805 ISDDREPESLKEVLSHPEKNQLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLK 864

Query: 73  RDSNDNTKRYKTRLVAKGYTQKDDIDYKETFSPVSKKDLLRIIMALVTHYNLEL 127
           +D +    RYK RLV KG+ QK  ID+ E FSPV K   +R I++L    +LE+
Sbjct: 865 KDGDCKLVRYKARLVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEV 918

[Close]

BLAST of Cmc08g0234761 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.1e-15
Identity = 44/96 (45.83%), Postives = 59/96 (61.46%), Query Frame = 0


Query: 24   QAIKRDNSAKWLDAMKEELKSMNDNEVWDLVEFPKESKR-VGCKWVFKTKRDSNDNTKRY 83
            QA+K D   +W  AM  E+ +   N  WDLV  P  S   VGC+W+F  K +S+ +  RY
Sbjct: 944  QAMKDD---RWRQAMGSEINAQIGNHTWDLVPPPPPSVTIVGCRWIFTKKFNSDGSLNRY 1003

Query: 84   KTRLVAKGYTQKDDIDYKETFSPVSKKDLLRIIMAL 119
            K RLVAKGY Q+  +DY ETFSPV K   +RI++ +
Sbjct: 1004 KARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGV 1036

[Close]

BLAST of Cmc08g0234761 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 8.9e-15
Identity = 41/95 (43.16%), Postives = 57/95 (60.00%), Query Frame = 0


Query: 25   AIKRDNSAKWLDAMKEELKSMNDNEVWDLVEFPKESKR-VGCKWVFKTKRDSNDNTKRYK 84
            AI+     +W +AM  E+ +   N  WDLV  P      VGC+W+F  K +S+ +  RYK
Sbjct: 959  AIQALKDERWRNAMGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSLNRYK 1018

Query: 85   TRLVAKGYTQKDDIDYKETFSPVSKKDLLRIIMAL 119
             RLVAKGY Q+  +DY ETFSPV K   +RI++ +
Sbjct: 1019 ARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGV 1053

[Close]

BLAST of Cmc08g0234761 vs. ExPASy Swiss-Prot
Match: P92520 (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.9e-13
Identity = 38/83 (45.78%), Postives = 53/83 (63.86%), Query Frame = 0


Query: 34  WLDAMKEELKSMNDNEVWDLVEFPKESKRVGCKWVFKTKRDSNDNTKRYKTRLVAKGYTQ 93
           W  AM+EEL +++ N+ W LV  P     +GCKWVFKTK  S+    R K RLVAKG+ Q
Sbjct: 40  WCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQ 99

Query: 94  KDDIDYKETFSPVSKKDLLRIIM 117
           ++ I + ET+SPV +   +R I+
Sbjct: 100 EEGIYFVETYSPVVRTATIRTIL 122

[Close]

BLAST of Cmc08g0234761 vs. ExPASy TrEMBL
Match: A0A5A7SLM2 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G004120 PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 8.3e-56
Identity = 112/125 (89.60%), Postives = 116/125 (92.80%), Query Frame = 0


Query: 3   VVYLHESEFDLSIDNDLVSFSQAIKRDNSAKWLDAMKEELKSMNDNEVWDLVEFPKESKR 62
           +VY HESEFDLSIDND VSFSQ IKRDNS KWLDAMKEELKSMNDNEVWDLVEFPKESKR
Sbjct: 341 LVYWHESEFDLSIDNDPVSFSQVIKRDNSTKWLDAMKEELKSMNDNEVWDLVEFPKESKR 400

Query: 63  VGCKWVFKTKRDSNDNTKRYKTRLVAKGYTQKDDIDYKETFSPVSKKDLLRIIMALVTHY 122
           VGCKWVFKTKRDSN N +RYK RLVAKGYTQKDDIDYKETFSPVSKKD LRIIMALV HY
Sbjct: 401 VGCKWVFKTKRDSNGNIERYKARLVAKGYTQKDDIDYKETFSPVSKKDSLRIIMALVAHY 460

Query: 123 NLELH 128
           +LEL+
Sbjct: 461 DLELY 465

[Close]

BLAST of Cmc08g0234761 vs. ExPASy TrEMBL
Match: A0A5D3C256 (Copia-like pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G00760 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 2.7e-54
Identity = 110/125 (88.00%), Postives = 114/125 (91.20%), Query Frame = 0


Query: 3   VVYLHESEFDLSIDNDLVSFSQAIKRDNSAKWLDAMKEELKSMNDNEVWDLVEFPKESKR 62
           +VY HESEFDLSIDND VSFSQ IKRDNS KWLDAMKEELKSMNDNEVWDLVE PKESKR
Sbjct: 493 LVYWHESEFDLSIDNDPVSFSQVIKRDNSTKWLDAMKEELKSMNDNEVWDLVELPKESKR 552

Query: 63  VGCKWVFKTKRDSNDNTKRYKTRLVAKGYTQKDDIDYKETFSPVSKKDLLRIIMALVTHY 122
           VGCKWVFKTKRDSN N +RYK RLVAKGYTQKD IDYKETFSPVSKKD LRIIMALV HY
Sbjct: 553 VGCKWVFKTKRDSNGNIERYKARLVAKGYTQKDGIDYKETFSPVSKKDSLRIIMALVAHY 612

Query: 123 NLELH 128
           +LEL+
Sbjct: 613 DLELY 617

[Close]

BLAST of Cmc08g0234761 vs. ExPASy TrEMBL
Match: A0A5A7TZN1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold507G00060 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 4.5e-54
Identity = 109/125 (87.20%), Postives = 113/125 (90.40%), Query Frame = 0


Query: 3   VVYLHESEFDLSIDNDLVSFSQAIKRDNSAKWLDAMKEELKSMNDNEVWDLVEFPKESKR 62
           +VYLHESEFDLSIDND VSFSQAIK DNS KWLDAMKEELKS NDNEVWD VE PKESKR
Sbjct: 137 LVYLHESEFDLSIDNDPVSFSQAIKGDNSTKWLDAMKEELKSTNDNEVWDFVELPKESKR 196

Query: 63  VGCKWVFKTKRDSNDNTKRYKTRLVAKGYTQKDDIDYKETFSPVSKKDLLRIIMALVTHY 122
           +GCKWVFKTKRDSN N +RYK RLVAKGYTQKD IDYKETFSPVSKKD LRIIMALV HY
Sbjct: 197 IGCKWVFKTKRDSNGNIERYKARLVAKGYTQKDGIDYKETFSPVSKKDSLRIIMALVAHY 256

Query: 123 NLELH 128
           +LELH
Sbjct: 257 DLELH 261

[Close]

BLAST of Cmc08g0234761 vs. ExPASy TrEMBL
Match: A0A5A7V4M3 (Copia-like pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold571G00420 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 5.9e-54
Identity = 108/125 (86.40%), Postives = 115/125 (92.00%), Query Frame = 0


Query: 3   VVYLHESEFDLSIDNDLVSFSQAIKRDNSAKWLDAMKEELKSMNDNEVWDLVEFPKESKR 62
           +VYLHESEFDLSIDND VSFSQAIK DNS KWLDAMKEELKSMNDNEVWDLVE PKESKR
Sbjct: 455 LVYLHESEFDLSIDNDPVSFSQAIKVDNSTKWLDAMKEELKSMNDNEVWDLVELPKESKR 514

Query: 63  VGCKWVFKTKRDSNDNTKRYKTRLVAKGYTQKDDIDYKETFSPVSKKDLLRIIMALVTHY 122
           VGCKWVF+TKRDSN N +RYK RLVAKGYTQKD IDYKETFSPVSKKD LRIIMAL+ HY
Sbjct: 515 VGCKWVFETKRDSNGNIERYKARLVAKGYTQKDGIDYKETFSPVSKKDSLRIIMALIAHY 574

Query: 123 NLELH 128
           +L++H
Sbjct: 575 DLKIH 579

[Close]

BLAST of Cmc08g0234761 vs. ExPASy TrEMBL
Match: A0A5D3BWW5 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1856G00300 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 7.8e-54
Identity = 110/125 (88.00%), Postives = 114/125 (91.20%), Query Frame = 0


Query: 3   VVYLHESEFDLSIDNDLVSFSQAIKRDNSAKWLDAMKEELKSMNDNEVWDLVEFPKESKR 62
           +VYLHESEFDLSIDND VSFSQAIK DNS KWLDAMKEELKSMNDNEVWDLVE PK+SKR
Sbjct: 506 LVYLHESEFDLSIDNDPVSFSQAIKGDNSTKWLDAMKEELKSMNDNEVWDLVELPKKSKR 565

Query: 63  VGCKWVFKTKRDSNDNTKRYKTRLVAKGYTQKDDIDYKETFSPVSKKDLLRIIMALVTHY 122
           VGCKWVFKTKRDSN N +R K RLVAKGYTQKD IDYKETFSPVSKKD LRIIMALV HY
Sbjct: 566 VGCKWVFKTKRDSNGNIERCKARLVAKGYTQKDGIDYKETFSPVSKKDSLRIIMALVAHY 625

Query: 123 NLELH 128
           +LELH
Sbjct: 626 DLELH 630

[Close]

BLAST of Cmc08g0234761 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 95.1 bits (235), Expect = 4.2e-20
Identity = 43/94 (45.74%), Postives = 61/94 (64.89%), Query Frame = 0


Query: 34  WLDAMKEELKSMNDNEVWDLVEFPKESKRVGCKWVFKTKRDSNDNTKRYKTRLVAKGYTQ 93
           W  AM +E+ +M     W++   P   K +GCKWV+K K +S+   +RYK RLVAKGYTQ
Sbjct: 98  WCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGYTQ 157

Query: 94  KDDIDYKETFSPVSKKDLLRIIMALVTHYNLELH 128
           ++ ID+ ETFSPV K   +++I+A+   YN  LH
Sbjct: 158 QEGIDFIETFSPVCKLTSVKLILAISAIYNFTLH 191

[Close]

BLAST of Cmc08g0234761 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 76.3 bits (186), Expect = 2.0e-14
Identity = 38/83 (45.78%), Postives = 53/83 (63.86%), Query Frame = 0


Query: 34  WLDAMKEELKSMNDNEVWDLVEFPKESKRVGCKWVFKTKRDSNDNTKRYKTRLVAKGYTQ 93
           W  AM+EEL +++ N+ W LV  P     +GCKWVFKTK  S+    R K RLVAKG+ Q
Sbjct: 40  WCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQ 99

Query: 94  KDDIDYKETFSPVSKKDLLRIIM 117
           ++ I + ET+SPV +   +R I+
Sbjct: 100 EEGIYFVETYSPVVRTATIRTIL 122

The following BLAST results are available for this feature:

BLAST of Cmc08g0234761 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0031640.1	1.7e-55	89.60	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK04469.1	5.5e-54	88.00	copia-like pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0047436.1	9.4e-54	87.20	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0061857.1	1.2e-53	86.40	copia-like pol polyprotein [Cucumis melo var. makuwa] >TYK15399.1 copia-like pol...	[more]
TYK04201.1	1.6e-53	88.00	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]

BLAST of Cmc08g0234761 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04146	1.5e-17	40.87	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P10978	1.2e-16	39.47	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q9ZT94	3.1e-15	45.83	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	8.9e-15	43.16	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P92520	2.9e-13	45.78	Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cmc08g0234761 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SLM2	8.3e-56	89.60	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3C256	2.7e-54	88.00	Copia-like pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A5A7TZN1	4.5e-54	87.20	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7V4M3	5.9e-54	86.40	Copia-like pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A5D3BWW5	7.8e-54	88.00	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]

BLAST of Cmc08g0234761 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	4.2e-20	45.74	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00820.1	2.0e-14	45.78	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 48..127 e-value: 4.8E-22 score: 78.7
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 20..126

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0234761.1	Cmc08g0234761.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006952	defense response
biological_process	GO:0015074	DNA integration
biological_process	GO:0009231	riboflavin biosynthetic process
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
biological_process	GO:0007165	signal transduction
molecular_function	GO:0008686	3,4-dihydroxy-2-butanone-4-phosphate synthase activity
molecular_function	GO:0043531	ADP binding
molecular_function	GO:0003887	DNA-directed DNA polymerase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding