Cmc08g0233231 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0233231
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Unknown protein
Location	CMiso1.1chr08: 30335827 .. 30336970 (-)
RNA-Seq Expression	Cmc08g0233231
Synteny	Cmc08g0233231

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATATAAAATTAGAAATTTGTTTTTCTCTTCATCAATTTTTCTTCTTCTTCTTCTTCTTCTTCCTTCCTGGGTCTGTTCTTGCTTCTTCCTAGGTTTTGCTGAAACAAAAAAGGTAAGCATAATTAATCCCCTTTTTTTTTCTCCTTAATTAATTTTATTCTATACTTTTGATCTTATTCTTCATCTCTTATTTCTCAATCTTTCTTTTAGTTTCATTTTTAACGAATAATTTCCTTTCCTTTTCTTTATTTCCTTTTAAACAATCTATATTATATCTTATCTTTAATTTTTAATTTCTTTGTATTCTTTCTGAAATCTCATCTTCTCGTATTATCTAACTTTGAAACTATTTTTTTTTTAGAATTAAAGATAAATCGGTTCTGAAATCTGAACAATAAATTAGTAAAGGTGAAGTTAACAATGAACGGAGCCATCAACATTAATATATCATAATTTAGGATTTTTTTTTTATAAAATAAATATTATATTAAATATAAAATTGAATATCTTCTCAATGGTAACAAGAATTACAATATAACAAAAAAAAAAAAAACATTGATATATAGTTAACAATATTTATTTTTTATTATATGTCGAAGGACAAAATAATAAAAAGGAGATAATCTCGAAAAAAAAAAAAAAACAAAAGCATCCGTTGATTCAGATGGGGTACGTGGTGATAATTCCACTGTGGATGTTGTTGTTCGTTGTGATCGTGGGCCTTACTGTTTACCTATTAGTAAGGGCCCGTAGACGAAGACAAGCAGTCCAACTTCCAGTTTATTATGGGCCTCCCGCTCCCCCACTTGGGGCCCAAGATAAGCCCAACTGATTTATCCAATACAACGCTCGTACTAGTAAGTTTAAGTTGTGTGTGTGAATTTTCGAGAATGTTTTTTCTTTGTTGGTACTAAAGTTTTATTTTGGACTTTTAGTATTTGTATAGAGTTAAATAAATGAATTTGACATTGTAACTTAATTTAGTTCATATTGTTTGAGCTTATTGTTGCCATGCATATATAAATTTAGTTTTATATTTCTTATATCTATGTAGAGTTCTAAACTTGGTAGAACGTGAGAAGTTTAGTACCTATCATAATGATGGTATTTAATTAAGTCGAGTGAATTGTACGGTTTCGTTAT

mRNA sequence

TATATAAAATTAGAAATTTGTTTTTCTCTTCATCAATTTTTCTTCTTCTTCTTCTTCTTCTTCCTTCCTGGGTCTGTTCTTGCTTCTTCCTAGGTTTTGCTGAAACAAAAAAGGACAAAATAATAAAAAGGAGATAATCTCGAAAAAAAAAAAAAAACAAAAGCATCCGTTGATTCAGATGGGGTACGTGGTGATAATTCCACTGTGGATGTTGTTGTTCGTTGTGATCGTGGGCCTTACTGTTTACCTATTAGTAAGGGCCCGTAGACGAAGACAAGCAGTCCAACTTCCAGTTTATTATGGGCCTCCCGCTCCCCCACTTGGGGCCCAAGATAAGCCCAACTGATTTATCCAATACAACGCTCGTACTAGTAAGTTTAAGTTGTGTGTGTGAATTTTCGAGAATGTTTTTTCTTTGTTGGTACTAAAGTTTTATTTTGGACTTTTAGTATTTGTATAGAGTTAAATAAATGAATTTGACATTGTAACTTAATTTAGTTCATATTGTTTGAGCTTATTGTTGCCATGCATATATAAATTTAGTTTTATATTTCTTATATCTATGTAGAGTTCTAAACTTGGTAGAACGTGAGAAGTTTAGTACCTATCATAATGATGGTATTTAATTAAGTCGAGTGAATTGTACGGTTTCGTTAT

Coding sequence (CDS)

ATGGGGTACGTGGTGATAATTCCACTGTGGATGTTGTTGTTCGTTGTGATCGTGGGCCTTACTGTTTACCTATTAGTAAGGGCCCGTAGACGAAGACAAGCAGTCCAACTTCCAGTTTATTATGGGCCTCCCGCTCCCCCACTTGGGGCCCAAGATAAGCCCAACTGA

Protein sequence

MGYVVIIPLWMLLFVVIVGLTVYLLVRARRRRQAVQLPVYYGPPAPPLGAQDKPN

Homology

[Close]

BLAST of Cmc08g0233231 vs. NCBI nr
Match: EXC16204.1 (hypothetical protein L484_024375 [Morus notabilis])

HSP 1 Score: 56.2 bits (134), Expect = 1.0e-04
Identity = 32/59 (54.24%), Postives = 42/59 (71.19%), Query Frame = 0


Query: 1  MGYVVIIPLWMLLFVVIVGLTVYLLVRARRRRQAVQLPVYYGPPAPPLGA----QDKPN 56
          MGY+V++ + ++LF++IV L  YLL RAR R QA  +P YYGPPAPP  A    QDKP+
Sbjct: 1  MGYIVVLSVPVILFILIVALAFYLLGRARGRSQAESVPQYYGPPAPPFQAHPPPQDKPS 59

[Close]

BLAST of Cmc08g0233231 vs. NCBI nr
Match: KDP29131.1 (hypothetical protein JCGZ_16520 [Jatropha curcas])

HSP 1 Score: 55.8 bits (133), Expect = 1.3e-04
Identity = 29/54 (53.70%), Postives = 39/54 (72.22%), Query Frame = 0


Query: 1  MGYVVIIPLWMLLFVVIVGLTVYLLVRARRRRQAVQLPVYYGPPAPPLGAQDKP 55
          MGYV+++ L ++LF++IV L  YL+ R   RR+A +LP YYGPPAPPL  Q  P
Sbjct: 1  MGYVIVVSLPLILFILIVALACYLVGRNLGRREAARLPQYYGPPAPPLQPQSSP 54

[Close]

BLAST of Cmc08g0233231 vs. NCBI nr
Match: KAF5750401.1 (hypothetical protein HS088_TW03G00737 [Tripterygium wilfordii])

HSP 1 Score: 54.3 bits (129), Expect = 3.9e-04
Identity = 30/50 (60.00%), Postives = 37/50 (74.00%), Query Frame = 0


Query: 1  MGYVVIIPLWMLLFVVIVGLTVYLLVRARRRRQAVQLPVYYGPPAPPLGA 51
          MGYV++I   ++LF +IV L  YLL RAR RR+A  +PVYYGPPAPP  A
Sbjct: 1  MGYVLVISFPVILFFLIVALAFYLLGRARGRREAPSVPVYYGPPAPPFQA 50

[Close]

BLAST of Cmc08g0233231 vs. NCBI nr
Match: POO01684.1 (hypothetical protein TorRG33x02_024610 [Trema orientale])

HSP 1 Score: 53.5 bits (127), Expect = 6.6e-04
Identity = 29/54 (53.70%), Postives = 38/54 (70.37%), Query Frame = 0


Query: 1  MGYVVIIPLWMLLFVVIVGLTVYLLVRARRRRQAVQLPVYYGPPAPPLGAQDKP 55
          MGY+V++ L ++LF++IV L  YLL RAR R  +  +P YYGPPA PL AQ  P
Sbjct: 1  MGYIVVVSLPLILFILIVALGFYLLGRARGRSDSAHVPQYYGPPAAPLQAQPPP 54

[Close]

BLAST of Cmc08g0233231 vs. ExPASy TrEMBL
Match: W9S7P7 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_024375 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 4.9e-05
Identity = 32/59 (54.24%), Postives = 42/59 (71.19%), Query Frame = 0


Query: 1  MGYVVIIPLWMLLFVVIVGLTVYLLVRARRRRQAVQLPVYYGPPAPPLGA----QDKPN 56
          MGY+V++ + ++LF++IV L  YLL RAR R QA  +P YYGPPAPP  A    QDKP+
Sbjct: 1  MGYIVVLSVPVILFILIVALAFYLLGRARGRSQAESVPQYYGPPAPPFQAHPPPQDKPS 59

[Close]

BLAST of Cmc08g0233231 vs. ExPASy TrEMBL
Match: A0A067JYT9 (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_16520 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 6.4e-05
Identity = 29/54 (53.70%), Postives = 39/54 (72.22%), Query Frame = 0


Query: 1  MGYVVIIPLWMLLFVVIVGLTVYLLVRARRRRQAVQLPVYYGPPAPPLGAQDKP 55
          MGYV+++ L ++LF++IV L  YL+ R   RR+A +LP YYGPPAPPL  Q  P
Sbjct: 1  MGYVIVVSLPLILFILIVALACYLVGRNLGRREAARLPQYYGPPAPPLQPQSSP 54

[Close]

BLAST of Cmc08g0233231 vs. ExPASy TrEMBL
Match: A0A7J7DVS4 (Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW03G00737 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.9e-04
Identity = 30/50 (60.00%), Postives = 37/50 (74.00%), Query Frame = 0


Query: 1  MGYVVIIPLWMLLFVVIVGLTVYLLVRARRRRQAVQLPVYYGPPAPPLGA 51
          MGYV++I   ++LF +IV L  YLL RAR RR+A  +PVYYGPPAPP  A
Sbjct: 1  MGYVLVISFPVILFFLIVALAFYLLGRARGRREAPSVPVYYGPPAPPFQA 50

[Close]

BLAST of Cmc08g0233231 vs. ExPASy TrEMBL
Match: A0A2P5FV58 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_024610 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 3.2e-04
Identity = 29/54 (53.70%), Postives = 38/54 (70.37%), Query Frame = 0


Query: 1  MGYVVIIPLWMLLFVVIVGLTVYLLVRARRRRQAVQLPVYYGPPAPPLGAQDKP 55
          MGY+V++ L ++LF++IV L  YLL RAR R  +  +P YYGPPA PL AQ  P
Sbjct: 1  MGYIVVVSLPLILFILIVALGFYLLGRARGRSDSAHVPQYYGPPAAPLQAQPPP 54

[Close]

BLAST of Cmc08g0233231 vs. ExPASy TrEMBL
Match: A0A2K2A1A2 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G127000 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 7.1e-04
Identity = 28/47 (59.57%), Postives = 37/47 (78.72%), Query Frame = 0


Query: 1  MGYVVIIPLWMLLFVVIVGLTVYLLVRARRRRQAVQLPVYYGPPAPP 48
          MGYVVI+ L ++LF++IV L  YLL RAR R +A ++P Y+GPPAPP
Sbjct: 1  MGYVVIVSLPVILFILIVALAFYLLGRARGRSEAARIPQYHGPPAPP 47

The following BLAST results are available for this feature:

BLAST of Cmc08g0233231 vs. NCBI nr


Match Name	E-value	Identity	Description
EXC16204.1	1.0e-04	54.24	hypothetical protein L484_024375 [Morus notabilis]	[more]
KDP29131.1	1.3e-04	53.70	hypothetical protein JCGZ_16520 [Jatropha curcas]	[more]
KAF5750401.1	3.9e-04	60.00	hypothetical protein HS088_TW03G00737 [Tripterygium wilfordii]	[more]
POO01684.1	6.6e-04	53.70	hypothetical protein TorRG33x02_024610 [Trema orientale]	[more]

BLAST of Cmc08g0233231 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc08g0233231 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
W9S7P7	4.9e-05	54.24	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_024375 PE=4 SV=1	[more]
A0A067JYT9	6.4e-05	53.70	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_16520 PE=4 SV=1	[more]
A0A7J7DVS4	1.9e-04	60.00	Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW03G00737 ...	[more]
A0A2P5FV58	3.2e-04	53.70	Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_024610 PE=4 SV...	[more]
A0A2K2A1A2	7.1e-04	59.57	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G127000 PE=4 ...	[more]

BLAST of Cmc08g0233231 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33727	OS07G0446900 PROTEIN	coord: 1..51
None	No IPR available	PANTHER	PTHR33727:SF8	BNACNNG02930D PROTEIN	coord: 1..51

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0233231.1	Cmc08g0233231.1	mRNA