Cmc08g0233041 (gene) Melon (Charmono) v1.1

Overview
NameCmc08g0233041
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionDEAD-box ATP-dependent RNA helicase 32
LocationCMiso1.1chr08: 30196571 .. 30197604 (+)
RNA-Seq ExpressionCmc08g0233041
SyntenyCmc08g0233041
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTAGGATCAAGTTAATTGGAGAATTTTTACTGTCAACTAGGGAGTACCTTGTTTGGCTAAAATCTCCAGGTAAGAGATTCTCCTACTAGACCTTCGAATTGAATTCAAAAGACCGCATGTAATTATGATTATGCATTGATGGTAGCTAAAATGCATAACTTGATGCTACTGATAATGACTGTCATTGTATTGATGTTGATGATGATGACTGAGATTATTATGTTGATGATTGATGATGATGACTGATGTTATGTTAATGACCGGTAGTATGTTGTTGATGACTGTTGATGATTGTTAATGCATGATATATTAATCACATGATTAAGGACGTTAAGATCAATACTCATGCCATGTTATGATGTTATGTTATGCTACTGCTATGGATAGGGTGTTCTGTTAACTTTGTCTATTAGAGTCGTACCTGCATGGGTGTCCTTCGGGATCACCACCTATTTAGGACTGTGTGGTTCGACGGGACGTCAGTCTAACATGGATATAGATATGATTCGAGTGATTCGACGGGGTCCTCGCATCCCGATTGTCTTAGTGTTACCCCCGGGTTCACTACAGACCAGCATGTCCTAGGTGCTCTCTCGGGACACCGAAGACCAGATTTTCGTTCCTACGGGAGCGCATGTTGCACGTGTTTGGGAACGTGCTAGAGATTGGGTACCATTTTCAGGACTCTAATGGGAAGTTAACAGACACCTAGCGGGACTAGTAGTAGGTCCCTTACTGAGTATATGTTTATACTCACTCTTTCTATGTTTAACATTTTAGGCGAAGGTAAAGGTAGAGTAAAGCTGGCGAGCGACAGAGAAGGATACGTGACATGCCATATGGGGACTCAGTTTTGCTTCCGCGTTTATGTTTCAGTGTTTTAATATTCCGTTTTTAATAAAAATTTAGTCTTCCCTCGTTTAAAAAAAGTGTCTCTTGTCATTGTTCCTTTTTAGTAACGACCTCAGCTTAGTATAAAGAGTTGGGTCGTTACAGTATTTCTTGTCCTTACCTCCAACCTGGCCTTGTT

mRNA sequence

ATGATTAGGATCAAGTTAATTGGAGAATTTTTACTGTCAACTAGGGAGTACCTTGTTTGGCTAAAATCTCCAGGCGAAGGTAAAGGTAGAGTAAAGCTGGCGAGCGACAGAGAAGGATACGTGACATGCCATATGGGGACTCAGTTTTGCTTCCGCGTTTATGTTTCAGTGTTTTAATATTCCGTTTTTAATAAAAATTTAGTCTTCCCTCGTTTAAAAAAAGTGTCTCTTGTCATTGTTCCTTTTTAGTAACGACCTCAGCTTAGTATAAAGAGTTGGGTCGTTACAGTATTTCTTGTCCTTACCTCCAACCTGGCCTTGTT

Coding sequence (CDS)

ATGATTAGGATCAAGTTAATTGGAGAATTTTTACTGTCAACTAGGGAGTACCTTGTTTGGCTAAAATCTCCAGGCGAAGGTAAAGGTAGAGTAAAGCTGGCGAGCGACAGAGAAGGATACGTGACATGCCATATGGGGACTCAGTTTTGCTTCCGCGTTTATGTTTCAGTGTTTTAA

Protein sequence

MIRIKLIGEFLLSTREYLVWLKSPGEGKGRVKLASDREGYVTCHMGTQFCFRVYVSVF
Homology
[Close]
BLAST of Cmc08g0233041 vs. NCBI nr
Match: KAA0033961.1 (DEAD-box ATP-dependent RNA helicase 32 [Cucumis melo var. makuwa] >TYK02583.1 DEAD-box ATP-dependent RNA helicase 32 [Cucumis melo var. makuwa])

HSP 1 Score: 85.5 bits (210), Expect = 1.6e-13
Identity = 52/100 (52.00%), Postives = 54/100 (54.00%), Query Frame = 0 

Query: 1  MIRIKLIGEFLLSTREYLVWLKSP------------------------------------ 59
          MIRIKLIGEFLLSTREYLVWLKSP                                    
Sbjct: 1  MIRIKLIGEFLLSTREYLVWLKSPDQHVLGAPPGHRRPDFRSYGSACCTCSGTCQRLGTI 60

[Close]
BLAST of Cmc08g0233041 vs. NCBI nr
Match: KAA0051087.1 (transposase [Cucumis melo var. makuwa] >TYK12105.1 transposase [Cucumis melo var. makuwa])

HSP 1 Score: 75.5 bits (184), Expect = 1.7e-10
Identity = 48/109 (44.04%), Postives = 50/109 (45.87%), Query Frame = 0 

Query: 4   IKLIGEFLLSTREYLVWLKS---------------------------------------- 59
           IKLIGEFLLS REY VWLKS                                        
Sbjct: 725 IKLIGEFLLSLREYFVWLKSQESYLHGCPSGSLPIQECVVRRNRQSSMDIDMIRVIRRDP 784

[Close]
BLAST of Cmc08g0233041 vs. NCBI nr
Match: KAA0065872.1 (hypothetical protein E6C27_scaffold538G00420 [Cucumis melo var. makuwa])

HSP 1 Score: 74.3 bits (181), Expect = 3.8e-10
Identity = 33/41 (80.49%), Postives = 36/41 (87.80%), Query Frame = 0 

Query: 18  LVWLKSPGEGKGRVKLASDREGYVTCHMGTQFCFRVYVSVF 59
           +V +  PGEGKGR KLASDREG+V CHMGTQFCFRVYVSVF
Sbjct: 188 IVLVLPPGEGKGRGKLASDREGFVACHMGTQFCFRVYVSVF 228

[Close]
BLAST of Cmc08g0233041 vs. NCBI nr
Match: KAA0045385.1 (hypothetical protein E6C27_scaffold442G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 73.9 bits (180), Expect = 5.0e-10
Identity = 35/55 (63.64%), Postives = 40/55 (72.73%), Query Frame = 0 

Query: 4  IKLIGEFLLSTREYLVWLKSPGEGKGRVKLASDREGYVTCHMGTQFCFRVYVSVF 59
          I +I       R  +V +  PGEGKGR KLASD+EG VTCHMGTQFCFRVYV+VF
Sbjct: 3  INMIRVIRRDPRSLIVLVFPPGEGKGRGKLASDKEGSVTCHMGTQFCFRVYVAVF 57

[Close]
BLAST of Cmc08g0233041 vs. NCBI nr
Match: KAA0063966.1 (hypothetical protein E6C27_scaffold616G001210 [Cucumis melo var. makuwa])

HSP 1 Score: 71.2 bits (173), Expect = 3.2e-09
Identity = 33/41 (80.49%), Postives = 35/41 (85.37%), Query Frame = 0 

Query: 18 LVWLKSPGEGKGRVKLASDREGYVTCHMGTQFCFRVYVSVF 59
          +V +   GEGKGR KLASDREG VTCHMGTQFCFRVYVSVF
Sbjct: 17 IVLVLPQGEGKGRGKLASDREGSVTCHMGTQFCFRVYVSVF 57

[Close]
BLAST of Cmc08g0233041 vs. ExPASy TrEMBL
Match: A0A5A7SWX3 (DEAD-box ATP-dependent RNA helicase 32 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold925G00360 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 8.0e-14
Identity = 52/100 (52.00%), Postives = 54/100 (54.00%), Query Frame = 0 

Query: 1  MIRIKLIGEFLLSTREYLVWLKSP------------------------------------ 59
          MIRIKLIGEFLLSTREYLVWLKSP                                    
Sbjct: 1  MIRIKLIGEFLLSTREYLVWLKSPDQHVLGAPPGHRRPDFRSYGSACCTCSGTCQRLGTI 60

[Close]
BLAST of Cmc08g0233041 vs. ExPASy TrEMBL
Match: A0A5D3CKP0 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G00380 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 8.3e-11
Identity = 48/109 (44.04%), Postives = 50/109 (45.87%), Query Frame = 0 

Query: 4   IKLIGEFLLSTREYLVWLKS---------------------------------------- 59
           IKLIGEFLLS REY VWLKS                                        
Sbjct: 725 IKLIGEFLLSLREYFVWLKSQESYLHGCPSGSLPIQECVVRRNRQSSMDIDMIRVIRRDP 784

[Close]
BLAST of Cmc08g0233041 vs. ExPASy TrEMBL
Match: A0A5A7VC30 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold538G00420 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.8e-10
Identity = 33/41 (80.49%), Postives = 36/41 (87.80%), Query Frame = 0 

Query: 18  LVWLKSPGEGKGRVKLASDREGYVTCHMGTQFCFRVYVSVF 59
           +V +  PGEGKGR KLASDREG+V CHMGTQFCFRVYVSVF
Sbjct: 188 IVLVLPPGEGKGRGKLASDREGFVACHMGTQFCFRVYVSVF 228

[Close]
BLAST of Cmc08g0233041 vs. ExPASy TrEMBL
Match: A0A5A7TVG7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold442G00010 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.4e-10
Identity = 35/55 (63.64%), Postives = 40/55 (72.73%), Query Frame = 0 

Query: 4  IKLIGEFLLSTREYLVWLKSPGEGKGRVKLASDREGYVTCHMGTQFCFRVYVSVF 59
          I +I       R  +V +  PGEGKGR KLASD+EG VTCHMGTQFCFRVYV+VF
Sbjct: 3  INMIRVIRRDPRSLIVLVFPPGEGKGRGKLASDKEGSVTCHMGTQFCFRVYVAVF 57

[Close]
BLAST of Cmc08g0233041 vs. ExPASy TrEMBL
Match: A0A5A7VC05 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold616G001210 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.6e-09
Identity = 33/41 (80.49%), Postives = 35/41 (85.37%), Query Frame = 0 

Query: 18 LVWLKSPGEGKGRVKLASDREGYVTCHMGTQFCFRVYVSVF 59
          +V +   GEGKGR KLASDREG VTCHMGTQFCFRVYVSVF
Sbjct: 17 IVLVLPQGEGKGRGKLASDREGSVTCHMGTQFCFRVYVSVF 57

The following BLAST results are available for this feature:
BLAST of Cmc08g0233041 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0033961.11.6e-1352.00DEAD-box ATP-dependent RNA helicase 32 [Cucumis melo var. makuwa] >TYK02583.1 DE... [more]
KAA0051087.11.7e-1044.04transposase [Cucumis melo var. makuwa] >TYK12105.1 transposase [Cucumis melo var... [more]
KAA0065872.13.8e-1080.49hypothetical protein E6C27_scaffold538G00420 [Cucumis melo var. makuwa][more]
KAA0045385.15.0e-1063.64hypothetical protein E6C27_scaffold442G00010 [Cucumis melo var. makuwa][more]
KAA0063966.13.2e-0980.49hypothetical protein E6C27_scaffold616G001210 [Cucumis melo var. makuwa][more]
BLAST of Cmc08g0233041 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cmc08g0233041 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7SWX38.0e-1452.00DEAD-box ATP-dependent RNA helicase 32 OS=Cucumis melo var. makuwa OX=1194695 GN... [more]
A0A5D3CKP08.3e-1144.04Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G00380 PE... [more]
A0A5A7VC301.8e-1080.49Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7TVG72.4e-1063.64Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7VC051.6e-0980.49Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of Cmc08g0233041 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc08g0233041.1Cmc08g0233041.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding