Cmc08g0232891 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0232891
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr08: 29957627 .. 29958202 (+)
RNA-Seq Expression	Cmc08g0232891
Synteny	Cmc08g0232891

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTAACATTCCCTATGCTTCTGCTGTTGGGAGCCTGATGTATGCAATGTTATGTACTGGACATGACATTTGCTATTCAGTGGGGATTGTTAGTAGATATCAGTCCAATCCTGGACGTGATCATTGGACAACCGTTAAGAATATTCTAAAATATCTTAGAAGAACAAAAGGCTACATGCTTGTGTATGGTTCTAAGGATTTGATCCTTACTGGATACACTGACTCTGATTTTCAAACTGATAAAGATGCTAGAAAGTCTACATCAAGATCAGTTTTCACTCTGAACGGAAGAGCAGTAGTATGGAGAAGCATAAAACAATCTTTTATTGCCGACTCCACTATGGAAGCTGAATATGTAGCTGCCTGTGAAGCAGCAAAAGAAGTAGTATGGCTTAAAAAGTTCTTAACAGATTTGGAAGTTGTTCCAAATATGCATCTGCCAATCACCTTGTATTGTGCAACAGTGGTGCAGTTGCAAATTCAAGAGAACCTAGAAGTCATAAATATGGAAAGCACATTGAACGAAAGTACTATCTTATCAGGGAAATCGTACATGGAGGAGACGTTACAGTAA

mRNA sequence

ATGAGTAACATTCCCTATGCTTCTGCTGTTGGGAGCCTGATGTATGCAATGTTATGTACTGGACATGACATTTGCTATTCAGTGGGGATTGTTAGTAGATATCAGTCCAATCCTGGACGTGATCATTGGACAACCGTTAAGAATATTCTAAAATATCTTAGAAGAACAAAAGGCTACATGCTTGTGTATGGTTCTAAGGATTTGATCCTTACTGGATACACTGACTCTGATTTTCAAACTGATAAAGATGCTAGAAAGTCTACATCAAGATCAGTTTTCACTCTGAACGGAAGAGCAGTAGTATGGAGAAGCATAAAACAATCTTTTATTGCCGACTCCACTATGGAAGCTGAATATGTAGCTGCCTGTGAAGCAGCAAAAGAAGTAGTATGGCTTAAAAAGTTCTTAACAGATTTGGAAGTTGTTCCAAATATGCATCTGCCAATCACCTTGTATTGTGCAACAGTGGTGCAGTTGCAAATTCAAGAGAACCTAGAAGTCATAAATATGGAAAGCACATTGAACGAAAGTACTATCTTATCAGGGAAATCGTACATGGAGGAGACGTTACAGTAA

Coding sequence (CDS)

ATGAGTAACATTCCCTATGCTTCTGCTGTTGGGAGCCTGATGTATGCAATGTTATGTACTGGACATGACATTTGCTATTCAGTGGGGATTGTTAGTAGATATCAGTCCAATCCTGGACGTGATCATTGGACAACCGTTAAGAATATTCTAAAATATCTTAGAAGAACAAAAGGCTACATGCTTGTGTATGGTTCTAAGGATTTGATCCTTACTGGATACACTGACTCTGATTTTCAAACTGATAAAGATGCTAGAAAGTCTACATCAAGATCAGTTTTCACTCTGAACGGAAGAGCAGTAGTATGGAGAAGCATAAAACAATCTTTTATTGCCGACTCCACTATGGAAGCTGAATATGTAGCTGCCTGTGAAGCAGCAAAAGAAGTAGTATGGCTTAAAAAGTTCTTAACAGATTTGGAAGTTGTTCCAAATATGCATCTGCCAATCACCTTGTATTGTGCAACAGTGGTGCAGTTGCAAATTCAAGAGAACCTAGAAGTCATAAATATGGAAAGCACATTGAACGAAAGTACTATCTTATCAGGGAAATCGTACATGGAGGAGACGTTACAGTAA

Protein sequence

MSNIPYASAVGSLMYAMLCTGHDICYSVGIVSRYQSNPGRDHWTTVKNILKYLRRTKGYMLVYGSKDLILTGYTDSDFQTDKDARKSTSRSVFTLNGRAVVWRSIKQSFIADSTMEAEYVAACEAAKEVVWLKKFLTDLEVVPNMHLPITLYCATVVQLQIQENLEVINMESTLNESTILSGKSYMEETLQ

Homology

[Close]

BLAST of Cmc08g0232891 vs. NCBI nr
Match: KAA0067886.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 373.6 bits (958), Expect = 1.0e-99
Identity = 190/191 (99.48%), Postives = 190/191 (99.48%), Query Frame = 0


Query: 1   MSNIPYASAVGSLMYAMLCTGHDICYSVGIVSRYQSNPGRDHWTTVKNILKYLRRTKGYM 60
           MSNIPYASAVGSLMYAMLCTG DICYSVGIVSRYQSNPGRDHWTTVKNILKYLRRTKGYM
Sbjct: 204 MSNIPYASAVGSLMYAMLCTGPDICYSVGIVSRYQSNPGRDHWTTVKNILKYLRRTKGYM 263

Query: 61  LVYGSKDLILTGYTDSDFQTDKDARKSTSRSVFTLNGRAVVWRSIKQSFIADSTMEAEYV 120
           LVYGSKDLILTGYTDSDFQTDKDARKSTSRSVFTLNGRAVVWRSIKQSFIADSTMEAEYV
Sbjct: 264 LVYGSKDLILTGYTDSDFQTDKDARKSTSRSVFTLNGRAVVWRSIKQSFIADSTMEAEYV 323

Query: 121 AACEAAKEVVWLKKFLTDLEVVPNMHLPITLYCATVVQLQIQENLEVINMESTLNESTIL 180
           AACEAAKEVVWLKKFLTDLEVVPNMHLPITLYCATVVQLQIQENLEVINMESTLNESTIL
Sbjct: 324 AACEAAKEVVWLKKFLTDLEVVPNMHLPITLYCATVVQLQIQENLEVINMESTLNESTIL 383

Query: 181 SGKSYMEETLQ 192
           SGKSYMEETLQ
Sbjct: 384 SGKSYMEETLQ 394

[Close]

BLAST of Cmc08g0232891 vs. NCBI nr
Match: TYK04328.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 373.6 bits (958), Expect = 1.0e-99
Identity = 190/191 (99.48%), Postives = 190/191 (99.48%), Query Frame = 0


Query: 1   MSNIPYASAVGSLMYAMLCTGHDICYSVGIVSRYQSNPGRDHWTTVKNILKYLRRTKGYM 60
           MSNIPYASAVGSLMYAMLCTG DICYSVGIVSRYQSNPGRDHWTTVKNILKYLRRTKGYM
Sbjct: 204 MSNIPYASAVGSLMYAMLCTGPDICYSVGIVSRYQSNPGRDHWTTVKNILKYLRRTKGYM 263

Query: 61  LVYGSKDLILTGYTDSDFQTDKDARKSTSRSVFTLNGRAVVWRSIKQSFIADSTMEAEYV 120
           LVYGSKDLILTGYTDSDFQTDKDARKSTSRSVFTLNGRAVVWRSIKQSFIADSTMEAEYV
Sbjct: 264 LVYGSKDLILTGYTDSDFQTDKDARKSTSRSVFTLNGRAVVWRSIKQSFIADSTMEAEYV 323

Query: 121 AACEAAKEVVWLKKFLTDLEVVPNMHLPITLYCATVVQLQIQENLEVINMESTLNESTIL 180
           AACEAAKEVVWLKKFLTDLEVVPNMHLPITLYCATVVQLQIQENLEVINMESTLNESTIL
Sbjct: 324 AACEAAKEVVWLKKFLTDLEVVPNMHLPITLYCATVVQLQIQENLEVINMESTLNESTIL 383

Query: 181 SGKSYMEETLQ 192
           SGKSYMEETLQ
Sbjct: 384 SGKSYMEETLQ 394

[Close]

BLAST of Cmc08g0232891 vs. NCBI nr
Match: KAA0062116.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 305.1 bits (780), Expect = 4.4e-79
Identity = 158/180 (87.78%), Postives = 163/180 (90.56%), Query Frame = 0


Query: 1   MSNIPYASAVGSLMYAMLCTGHDICYSVGIVSRYQSNPGRDHWTTVKNILKYLRRTKGYM 60
           MSNIPYASAVGSLMYAMLCT  DICYSVGIV RYQSNPGRDHWTTVKNILKYLRRTK YM
Sbjct: 19  MSNIPYASAVGSLMYAMLCTRPDICYSVGIVIRYQSNPGRDHWTTVKNILKYLRRTKDYM 78

Query: 61  LVYGSKDLILTGYTDSDFQTDKDARKSTSRSVFTLNGRAVVWRSIKQSFIADSTMEAEYV 120
           LVYGSKDLIL GYTDSDFQTDKDARKSTSRSVFTLNG AVVWRSIKQ +IA+STMEAEYV
Sbjct: 79  LVYGSKDLILIGYTDSDFQTDKDARKSTSRSVFTLNGGAVVWRSIKQYYIANSTMEAEYV 138

Query: 121 AACEAAKEVVWLKKFLTDLEVVPNMHLPITLYC-ATVVQLQIQENLEVINMESTLNESTI 180
           AACEAAKE VWLK FLTDLE+VPNM LPITLYC  +  QLQI ENLEVIN E+ LNESTI
Sbjct: 139 AACEAAKEAVWLKMFLTDLEIVPNMQLPITLYCDNSGAQLQIHENLEVINEENMLNESTI 198

[Close]

BLAST of Cmc08g0232891 vs. NCBI nr
Match: KAA0036107.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 294.3 bits (752), Expect = 7.7e-76
Identity = 156/191 (81.68%), Postives = 163/191 (85.34%), Query Frame = 0


Query: 1   MSNIPYASAVGSLMYAMLCTGHDICYSVGIVSRYQSNPGRDHWTTVKNILKYLRRTKGYM 60
           MSNIPYASA+GSLMYAMLCT  DICYSVGIVSRYQSN GRDHWTTVKNILKY RRTK YM
Sbjct: 1   MSNIPYASAIGSLMYAMLCTKPDICYSVGIVSRYQSNLGRDHWTTVKNILKYPRRTKDYM 60

Query: 61  LVYGSKDLILTGYTDSDFQTDKDARKSTSRSVFTLNGRAVVWRSIKQSFIADSTMEAEYV 120
           LVYGSKDLILTGYT SDFQTD+DARKSTS SVFTLN  AVVWRSIKQS IA+        
Sbjct: 61  LVYGSKDLILTGYTVSDFQTDRDARKSTSGSVFTLNEGAVVWRSIKQSCIAN-------- 120

Query: 121 AACEAAKEVVWLKKFLTDLEVVPNMHLPITLYCATVVQLQIQENLEVINMESTLNESTIL 180
             CEAAKE +WLKKFLTDLEVVPNM+LPITLYC   VQLQI ENLEVIN ESTLNE+TIL
Sbjct: 121 --CEAAKEAIWLKKFLTDLEVVPNMYLPITLYCDNSVQLQIHENLEVINEESTLNENTIL 180

Query: 181 SGKSYMEETLQ 192
           SGK Y+EE LQ
Sbjct: 181 SGKFYIEEMLQ 181

[Close]

BLAST of Cmc08g0232891 vs. NCBI nr
Match: TYK27612.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 294.3 bits (752), Expect = 7.7e-76
Identity = 156/191 (81.68%), Postives = 163/191 (85.34%), Query Frame = 0


Query: 1   MSNIPYASAVGSLMYAMLCTGHDICYSVGIVSRYQSNPGRDHWTTVKNILKYLRRTKGYM 60
           MSNIPYASA+GSLMYAMLCT  DICYSVGIVSRYQSN GRDHWTTVKNILKY RRTK YM
Sbjct: 32  MSNIPYASAIGSLMYAMLCTKPDICYSVGIVSRYQSNLGRDHWTTVKNILKYPRRTKDYM 91

Query: 61  LVYGSKDLILTGYTDSDFQTDKDARKSTSRSVFTLNGRAVVWRSIKQSFIADSTMEAEYV 120
           LVYGSKDLILTGYT SDFQTD+DARKSTS SVFTLN  AVVWRSIKQS IA+        
Sbjct: 92  LVYGSKDLILTGYTVSDFQTDRDARKSTSGSVFTLNEGAVVWRSIKQSCIAN-------- 151

Query: 121 AACEAAKEVVWLKKFLTDLEVVPNMHLPITLYCATVVQLQIQENLEVINMESTLNESTIL 180
             CEAAKE +WLKKFLTDLEVVPNM+LPITLYC   VQLQI ENLEVIN ESTLNE+TIL
Sbjct: 152 --CEAAKEAIWLKKFLTDLEVVPNMYLPITLYCDNSVQLQIHENLEVINEESTLNENTIL 211

Query: 181 SGKSYMEETLQ 192
           SGK Y+EE LQ
Sbjct: 212 SGKFYIEEMLQ 212

[Close]

BLAST of Cmc08g0232891 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.9e-37
Identity = 79/164 (48.17%), Postives = 112/164 (68.29%), Query Frame = 0


Query: 1    MSNIPYASAVGSLMYAMLCTGHDICYSVGIVSRYQSNPGRDHWTTVKNILKYLRRTKGYM 60
            M+ +PY+SAVGSLMYAM+CT  DI ++VG+VSR+  NPG++HW  VK IL+YLR T G  
Sbjct: 1106 MAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDC 1165

Query: 61   LVYGSKDLILTGYTDSDFQTDKDARKSTSRSVFTLNGRAVVWRSIKQSFIADSTMEAEYV 120
            L +G  D IL GYTD+D   D D RKS++  +FT +G A+ W+S  Q  +A ST EAEY+
Sbjct: 1166 LCFGGSDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYI 1225

Query: 121  AACEAAKEVVWLKKFLTDLEVVPNMHLPITLYCATVVQLQIQEN 165
            AA E  KE++WLK+FL +L +    ++   +YC +   + + +N
Sbjct: 1226 AATETGKEMIWLKRFLQELGLHQKEYV---VYCDSQSAIDLSKN 1266

[Close]

BLAST of Cmc08g0232891 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 4.9e-25
Identity = 59/133 (44.36%), Postives = 87/133 (65.41%), Query Frame = 0


Query: 1   MSNIPYASAVGSLMYAMLCTGHDICYSVGIVSRYQSNPGRDHWTTVKNILKYLRRTKGYM 60
           M N+PY SAVG++MY M+ T  D+  +VG++S++ S+P   HW  +K +L+YL+ T+ Y 
Sbjct: 1   MKNVPYLSAVGAIMYLMVVTRPDLAAAVGVLSQFASDPCPTHWQALKRVLRYLQSTQTYG 60

Query: 61  LVYGSKDLI-LTGYTDSDFQTDKDARKSTSRSVFTLNGRAVVWRSIKQSFIADSTMEAEY 120
           L +       L GY+D+D+  D ++R+STS  +F LNG  V WRS KQ  +A S+ E EY
Sbjct: 61  LEFTRAGTAKLVGYSDADWAGDVESRRSTSGYLFKLNGGCVSWRSKKQRTVALSSTEDEY 120

Query: 121 VAACEAAKEVVWL 133
           +A  EA +E VWL
Sbjct: 121 MALSEATQEAVWL 133

[Close]

BLAST of Cmc08g0232891 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 97.1 bits (240), Expect = 2.4e-19
Identity = 57/155 (36.77%), Postives = 89/155 (57.42%), Query Frame = 0


Query: 3    NIPYASAVGSLMYAMLCTGHDICYSVGIVSRYQSNPGRDHWTTVKNILKYLRRTKGYMLV 62
            N P  S +G LMY MLCT  D+  +V I+SRY S    + W  +K +L+YL+ T    L+
Sbjct: 1178 NTPCRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLI 1237

Query: 63   YGSKDLI----LTGYTDSDFQTDKDARKSTSRSVFTL-NGRAVVWRSIKQSFIADSTMEA 122
            +  K+L     + GY DSD+   +  RKST+  +F + +   + W + +Q+ +A S+ EA
Sbjct: 1238 F-KKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEA 1297

Query: 123  EYVAACEAAKEVVWLKKFLTDLEVVPNMHLPITLY 153
            EY+A  EA +E +WLK  LT + +   +  PI +Y
Sbjct: 1298 EYMALFEAVREALWLKFLLTSINI--KLENPIKIY 1329

[Close]

BLAST of Cmc08g0232891 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 3.0e-14
Identity = 49/152 (32.24%), Postives = 76/152 (50.00%), Query Frame = 0


Query: 6    YASAVGSLMYAMLCTGHDICYSVGIVSRYQSNPGRDHWTTVKNILKYLRRTKGY-MLVYG 65
            Y   VGSL Y +  T  D+ Y+V  +S+Y   P  DHW  +K +L+YL  T  + + +  
Sbjct: 1228 YRGIVGSLQY-LAFTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFLKK 1287

Query: 66   SKDLILTGYTDSDFQTDKDARKSTSRSVFTLNGRAVVWRSIKQSFIADSTMEAEYVAACE 125
               L L  Y+D+D+  D D   ST+  +  L    + W S KQ  +  S+ EAEY +   
Sbjct: 1288 GNTLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVAN 1347

Query: 126  AAKEVVWLKKFLTDLEVVPNMHLPITLYCATV 157
             + E+ W+   LT+L +   +  P  +YC  V
Sbjct: 1348 TSSELQWICSLLTELGI--QLSHPPVIYCDNV 1376

[Close]

BLAST of Cmc08g0232891 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 4.3e-13
Identity = 49/152 (32.24%), Postives = 76/152 (50.00%), Query Frame = 0


Query: 6    YASAVGSLMYAMLCTGHDICYSVGIVSRYQSNPGRDHWTTVKNILKYLRRTKGY-MLVYG 65
            Y   VGSL Y +  T  DI Y+V  +S++   P  +H   +K IL+YL  T  + + +  
Sbjct: 1245 YRGIVGSLQY-LAFTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLKK 1304

Query: 66   SKDLILTGYTDSDFQTDKDARKSTSRSVFTLNGRAVVWRSIKQSFIADSTMEAEYVAACE 125
               L L  Y+D+D+  DKD   ST+  +  L    + W S KQ  +  S+ EAEY +   
Sbjct: 1305 GNTLSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVAN 1364

Query: 126  AAKEVVWLKKFLTDLEVVPNMHLPITLYCATV 157
             + E+ W+   LT+L +   +  P  +YC  V
Sbjct: 1365 TSSEMQWICSLLTELGI--RLTRPPVIYCDNV 1393

[Close]

BLAST of Cmc08g0232891 vs. ExPASy TrEMBL
Match: A0A5D3BZ86 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold527G00650 PE=4 SV=1)

HSP 1 Score: 373.6 bits (958), Expect = 4.8e-100
Identity = 190/191 (99.48%), Postives = 190/191 (99.48%), Query Frame = 0


Query: 1   MSNIPYASAVGSLMYAMLCTGHDICYSVGIVSRYQSNPGRDHWTTVKNILKYLRRTKGYM 60
           MSNIPYASAVGSLMYAMLCTG DICYSVGIVSRYQSNPGRDHWTTVKNILKYLRRTKGYM
Sbjct: 204 MSNIPYASAVGSLMYAMLCTGPDICYSVGIVSRYQSNPGRDHWTTVKNILKYLRRTKGYM 263

Query: 61  LVYGSKDLILTGYTDSDFQTDKDARKSTSRSVFTLNGRAVVWRSIKQSFIADSTMEAEYV 120
           LVYGSKDLILTGYTDSDFQTDKDARKSTSRSVFTLNGRAVVWRSIKQSFIADSTMEAEYV
Sbjct: 264 LVYGSKDLILTGYTDSDFQTDKDARKSTSRSVFTLNGRAVVWRSIKQSFIADSTMEAEYV 323

Query: 121 AACEAAKEVVWLKKFLTDLEVVPNMHLPITLYCATVVQLQIQENLEVINMESTLNESTIL 180
           AACEAAKEVVWLKKFLTDLEVVPNMHLPITLYCATVVQLQIQENLEVINMESTLNESTIL
Sbjct: 324 AACEAAKEVVWLKKFLTDLEVVPNMHLPITLYCATVVQLQIQENLEVINMESTLNESTIL 383

Query: 181 SGKSYMEETLQ 192
           SGKSYMEETLQ
Sbjct: 384 SGKSYMEETLQ 394

[Close]

BLAST of Cmc08g0232891 vs. ExPASy TrEMBL
Match: A0A5A7VMU7 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G00400 PE=4 SV=1)

HSP 1 Score: 373.6 bits (958), Expect = 4.8e-100
Identity = 190/191 (99.48%), Postives = 190/191 (99.48%), Query Frame = 0


Query: 1   MSNIPYASAVGSLMYAMLCTGHDICYSVGIVSRYQSNPGRDHWTTVKNILKYLRRTKGYM 60
           MSNIPYASAVGSLMYAMLCTG DICYSVGIVSRYQSNPGRDHWTTVKNILKYLRRTKGYM
Sbjct: 204 MSNIPYASAVGSLMYAMLCTGPDICYSVGIVSRYQSNPGRDHWTTVKNILKYLRRTKGYM 263

Query: 61  LVYGSKDLILTGYTDSDFQTDKDARKSTSRSVFTLNGRAVVWRSIKQSFIADSTMEAEYV 120
           LVYGSKDLILTGYTDSDFQTDKDARKSTSRSVFTLNGRAVVWRSIKQSFIADSTMEAEYV
Sbjct: 264 LVYGSKDLILTGYTDSDFQTDKDARKSTSRSVFTLNGRAVVWRSIKQSFIADSTMEAEYV 323

Query: 121 AACEAAKEVVWLKKFLTDLEVVPNMHLPITLYCATVVQLQIQENLEVINMESTLNESTIL 180
           AACEAAKEVVWLKKFLTDLEVVPNMHLPITLYCATVVQLQIQENLEVINMESTLNESTIL
Sbjct: 324 AACEAAKEVVWLKKFLTDLEVVPNMHLPITLYCATVVQLQIQENLEVINMESTLNESTIL 383

Query: 181 SGKSYMEETLQ 192
           SGKSYMEETLQ
Sbjct: 384 SGKSYMEETLQ 394

[Close]

BLAST of Cmc08g0232891 vs. ExPASy TrEMBL
Match: A0A5A7V6Q6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G004720 PE=4 SV=1)

HSP 1 Score: 305.1 bits (780), Expect = 2.1e-79
Identity = 158/180 (87.78%), Postives = 163/180 (90.56%), Query Frame = 0


Query: 1   MSNIPYASAVGSLMYAMLCTGHDICYSVGIVSRYQSNPGRDHWTTVKNILKYLRRTKGYM 60
           MSNIPYASAVGSLMYAMLCT  DICYSVGIV RYQSNPGRDHWTTVKNILKYLRRTK YM
Sbjct: 19  MSNIPYASAVGSLMYAMLCTRPDICYSVGIVIRYQSNPGRDHWTTVKNILKYLRRTKDYM 78

Query: 61  LVYGSKDLILTGYTDSDFQTDKDARKSTSRSVFTLNGRAVVWRSIKQSFIADSTMEAEYV 120
           LVYGSKDLIL GYTDSDFQTDKDARKSTSRSVFTLNG AVVWRSIKQ +IA+STMEAEYV
Sbjct: 79  LVYGSKDLILIGYTDSDFQTDKDARKSTSRSVFTLNGGAVVWRSIKQYYIANSTMEAEYV 138

Query: 121 AACEAAKEVVWLKKFLTDLEVVPNMHLPITLYC-ATVVQLQIQENLEVINMESTLNESTI 180
           AACEAAKE VWLK FLTDLE+VPNM LPITLYC  +  QLQI ENLEVIN E+ LNESTI
Sbjct: 139 AACEAAKEAVWLKMFLTDLEIVPNMQLPITLYCDNSGAQLQIHENLEVINEENMLNESTI 198

[Close]

BLAST of Cmc08g0232891 vs. ExPASy TrEMBL
Match: A0A5D3DVT3 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold86G00300 PE=4 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 3.7e-76
Identity = 156/191 (81.68%), Postives = 163/191 (85.34%), Query Frame = 0


Query: 1   MSNIPYASAVGSLMYAMLCTGHDICYSVGIVSRYQSNPGRDHWTTVKNILKYLRRTKGYM 60
           MSNIPYASA+GSLMYAMLCT  DICYSVGIVSRYQSN GRDHWTTVKNILKY RRTK YM
Sbjct: 32  MSNIPYASAIGSLMYAMLCTKPDICYSVGIVSRYQSNLGRDHWTTVKNILKYPRRTKDYM 91

Query: 61  LVYGSKDLILTGYTDSDFQTDKDARKSTSRSVFTLNGRAVVWRSIKQSFIADSTMEAEYV 120
           LVYGSKDLILTGYT SDFQTD+DARKSTS SVFTLN  AVVWRSIKQS IA+        
Sbjct: 92  LVYGSKDLILTGYTVSDFQTDRDARKSTSGSVFTLNEGAVVWRSIKQSCIAN-------- 151

Query: 121 AACEAAKEVVWLKKFLTDLEVVPNMHLPITLYCATVVQLQIQENLEVINMESTLNESTIL 180
             CEAAKE +WLKKFLTDLEVVPNM+LPITLYC   VQLQI ENLEVIN ESTLNE+TIL
Sbjct: 152 --CEAAKEAIWLKKFLTDLEVVPNMYLPITLYCDNSVQLQIHENLEVINEESTLNENTIL 211

Query: 181 SGKSYMEETLQ 192
           SGK Y+EE LQ
Sbjct: 212 SGKFYIEEMLQ 212

[Close]

BLAST of Cmc08g0232891 vs. ExPASy TrEMBL
Match: A0A5A7T3D6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold338G00070 PE=4 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 3.7e-76
Identity = 156/191 (81.68%), Postives = 163/191 (85.34%), Query Frame = 0


Query: 1   MSNIPYASAVGSLMYAMLCTGHDICYSVGIVSRYQSNPGRDHWTTVKNILKYLRRTKGYM 60
           MSNIPYASA+GSLMYAMLCT  DICYSVGIVSRYQSN GRDHWTTVKNILKY RRTK YM
Sbjct: 1   MSNIPYASAIGSLMYAMLCTKPDICYSVGIVSRYQSNLGRDHWTTVKNILKYPRRTKDYM 60

Query: 61  LVYGSKDLILTGYTDSDFQTDKDARKSTSRSVFTLNGRAVVWRSIKQSFIADSTMEAEYV 120
           LVYGSKDLILTGYT SDFQTD+DARKSTS SVFTLN  AVVWRSIKQS IA+        
Sbjct: 61  LVYGSKDLILTGYTVSDFQTDRDARKSTSGSVFTLNEGAVVWRSIKQSCIAN-------- 120

Query: 121 AACEAAKEVVWLKKFLTDLEVVPNMHLPITLYCATVVQLQIQENLEVINMESTLNESTIL 180
             CEAAKE +WLKKFLTDLEVVPNM+LPITLYC   VQLQI ENLEVIN ESTLNE+TIL
Sbjct: 121 --CEAAKEAIWLKKFLTDLEVVPNMYLPITLYCDNSVQLQIHENLEVINEESTLNENTIL 180

Query: 181 SGKSYMEETLQ 192
           SGK Y+EE LQ
Sbjct: 181 SGKFYIEEMLQ 181

[Close]

BLAST of Cmc08g0232891 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 82.8 bits (203), Expect = 3.3e-16
Identity = 52/160 (32.50%), Postives = 84/160 (52.50%), Query Frame = 0


Query: 6   YASAVGSLMYAMLCTGHDICYSVGIVSRYQSNPGRDHWTTVKNILKYLRRTKGYMLVYGS 65
           Y   +G LMY  + T  DI ++V  +S++   P   H   V  IL Y++ T G  L Y S
Sbjct: 378 YRRLIGRLMYLQI-TRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSS 437

Query: 66  K-DLILTGYTDSDFQTDKDARKSTSRSVFTLNGRAVVWRSIKQSFIADSTMEAEYVAACE 125
           + ++ L  ++D+ FQ+ KD R+ST+     L    + W+S KQ  ++ S+ EAEY A   
Sbjct: 438 QAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSF 497

Query: 126 AAKEVVWLKKFLTDLEVVPNMHLPITLYCATVVQLQIQEN 165
           A  E++WL +F  +L++   +  P  L+C     + I  N
Sbjct: 498 ATDEMMWLAQFFRELQL--PLSKPTLLFCDNTAAIHIATN 534

The following BLAST results are available for this feature:

BLAST of Cmc08g0232891 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0067886.1	1.0e-99	99.48	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK04328.1	1.0e-99	99.48	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0062116.1	4.4e-79	87.78	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0036107.1	7.7e-76	81.68	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK27612.1	7.7e-76	81.68	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc08g0232891 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.9e-37	48.17	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P0CV72	4.9e-25	44.36	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]
P04146	2.4e-19	36.77	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	3.0e-14	32.24	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	4.3e-13	32.24	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]

BLAST of Cmc08g0232891 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BZ86	4.8e-100	99.48	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold527G0065...	[more]
A0A5A7VMU7	4.8e-100	99.48	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G0040...	[more]
A0A5A7V6Q6	2.1e-79	87.78	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G00472...	[more]
A0A5D3DVT3	3.7e-76	81.68	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold86G00300...	[more]
A0A5A7T3D6	3.7e-76	81.68	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold338G0007...	[more]

BLAST of Cmc08g0232891 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	3.3e-16	32.50	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439:SF273	RIBOSOME BIOGENESIS PROTEIN BOP1 HOMOLOG	coord: 78..153
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 78..153
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 71..153 e-value: 8.97078E-35 score: 117.569

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0232891.1	Cmc08g0232891.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding