Cmc08g0232661 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0232661
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase Ty1/copia-type domain-containing protein
Location	CMiso1.1chr08: 29632450 .. 29632974 (-)
RNA-Seq Expression	Cmc08g0232661
Synteny	Cmc08g0232661

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGTTAAAACTGCTTTCCTAAATTGTAATTTAGAAGAAGAGATTTATATGGAACAATCTAAAGGTTTCATAGTTCACGGTCAAGAATCCAAAGTTTGCAAACTAGATAAATTCCTCTATGGCCTAAAACAAGCTCCCAAACAATGGCACGAAAAGTTTGACAACTTACTCATGTCAAAAGGATTCAAAGTAAATGAAAGTGACAAATGTATCTACTATAAGACTGAAGGTAGGCTATGTATTATCATATGCCTATACATAGATGACATGTTAATCTTTGGATCAAACTTGCACGTCATAAATGATGTAAAATCTATGTTGAGTGCAAACTTTGACATGAAAGACTTAGGTGAAGTTGATGTAATCTTAGGCATCAAAATTACAAGAACTGAAAATAGAATTTTCTTATATCAATCTCATTACATAGAAAAGATTCTAAAGAAGTACAACTACTTTGATAGTAAACTAGCTTATACACCTTATGAGTGTGAAATTATTCAAGAACATTGGCGACAGTGTTAA

mRNA sequence

ATGGATGTTAAAACTGCTTTCCTAAATTGTAATTTAGAAGAAGAGATTTATATGGAACAATCTAAAGGTTTCATAGTTCACGGTCAAGAATCCAAAGTTTGCAAACTAGATAAATTCCTCTATGGCCTAAAACAAGCTCCCAAACAATGGCACGAAAAGTTTGACAACTTACTCATGTCAAAAGGATTCAAAGTAAATGAAAGTGACAAATGTATCTACTATAAGACTGAAGGTAGGCTATGTATTATCATATGCCTATACATAGATGACATGTTAATCTTTGGATCAAACTTGCACGTCATAAATGATGTAAAATCTATGTTGAGTGCAAACTTTGACATGAAAGACTTAGGTGAAGTTGATGTAATCTTAGGCATCAAAATTACAAGAACTGAAAATAGAATTTTCTTATATCAATCTCATTACATAGAAAAGATTCTAAAGAAGTACAACTACTTTGATAGTAAACTAGCTTATACACCTTATGAGTGTGAAATTATTCAAGAACATTGGCGACAGTGTTAA

Coding sequence (CDS)

ATGGATGTTAAAACTGCTTTCCTAAATTGTAATTTAGAAGAAGAGATTTATATGGAACAATCTAAAGGTTTCATAGTTCACGGTCAAGAATCCAAAGTTTGCAAACTAGATAAATTCCTCTATGGCCTAAAACAAGCTCCCAAACAATGGCACGAAAAGTTTGACAACTTACTCATGTCAAAAGGATTCAAAGTAAATGAAAGTGACAAATGTATCTACTATAAGACTGAAGGTAGGCTATGTATTATCATATGCCTATACATAGATGACATGTTAATCTTTGGATCAAACTTGCACGTCATAAATGATGTAAAATCTATGTTGAGTGCAAACTTTGACATGAAAGACTTAGGTGAAGTTGATGTAATCTTAGGCATCAAAATTACAAGAACTGAAAATAGAATTTTCTTATATCAATCTCATTACATAGAAAAGATTCTAAAGAAGTACAACTACTTTGATAGTAAACTAGCTTATACACCTTATGAGTGTGAAATTATTCAAGAACATTGGCGACAGTGTTAA

Protein sequence

MDVKTAFLNCNLEEEIYMEQSKGFIVHGQESKVCKLDKFLYGLKQAPKQWHEKFDNLLMSKGFKVNESDKCIYYKTEGRLCIIICLYIDDMLIFGSNLHVINDVKSMLSANFDMKDLGEVDVILGIKITRTENRIFLYQSHYIEKILKKYNYFDSKLAYTPYECEIIQEHWRQC

Homology

[Close]

BLAST of Cmc08g0232661 vs. NCBI nr
Match: KAA0060459.1 (hypothetical protein E6C27_scaffold22G002870 [Cucumis melo var. makuwa] >TYK18544.1 hypothetical protein E5676_scaffold119G00450 [Cucumis melo var. makuwa])

HSP 1 Score: 301.2 bits (770), Expect = 5.7e-78
Identity = 147/166 (88.55%), Postives = 152/166 (91.57%), Query Frame = 0


Query: 1   MDVKTAFLNCNLEEEIYMEQSKGFIVHGQESKVCKLDKFLYGLKQAPKQWHEKFDNLLMS 60
           MDVKTAFLN +LEEEIYMEQ +GFIVH QESKVCKLDK LYGLKQAPKQWHEKFDNLLMS
Sbjct: 1   MDVKTAFLNGDLEEEIYMEQPEGFIVHNQESKVCKLDKSLYGLKQAPKQWHEKFDNLLMS 60

Query: 61  KGFKVNESDKCIYYKTEGRLCIIICLYIDDMLIFGSNLHVINDVKSMLSANFDMKDLGEV 120
           KGFKVNESDKCIYYKTEGRLCIIICLY+DDMLIFGSNLHVINDVKSMLS NFDMKDLGE 
Sbjct: 61  KGFKVNESDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHVINDVKSMLSVNFDMKDLGEA 120

Query: 121 DVILGIKITRTENRIFLYQSHYIEKILKKYNYFDSKLAYTPYECEI 167
           DVILGIKITRTEN IFL QSHYIEK LKKYNYFDSK   TPY+  +
Sbjct: 121 DVILGIKITRTENGIFLDQSHYIEKTLKKYNYFDSKPTCTPYDSSV 166

[Close]

BLAST of Cmc08g0232661 vs. NCBI nr
Match: KAA0036466.1 (putative Polyprotein [Cucumis melo var. makuwa] >TYK00021.1 putative Polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 298.9 bits (764), Expect = 2.8e-77
Identity = 147/166 (88.55%), Postives = 152/166 (91.57%), Query Frame = 0


Query: 1   MDVKTAFLNCNLEEEIYMEQSKGFIVHGQESKVCKLDKFLYGLKQAPKQWHEKFDNLLMS 60
           MDVKTAFLN +LEEEIYMEQ  GFIVH QESKVCKLDKFLYGLKQAPKQW+EKFDNLLMS
Sbjct: 1   MDVKTAFLNGDLEEEIYMEQLIGFIVHDQESKVCKLDKFLYGLKQAPKQWYEKFDNLLMS 60

Query: 61  KGFKVNESDKCIYYKTEGRLCIIICLYIDDMLIFGSNLHVINDVKSMLSANFDMKDLGEV 120
           KGFKVNESDKCIYYKTEGRLCIIICLY+DDMLIFGSNLHVINDVKSM SANFDMKDLGE 
Sbjct: 61  KGFKVNESDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHVINDVKSMFSANFDMKDLGEA 120

Query: 121 DVILGIKITRTENRIFLYQSHYIEKILKKYNYFDSKLAYTPYECEI 167
           DVILGIKITR ENRI L QSHYIEKILKKYNYFD K A TPY+  +
Sbjct: 121 DVILGIKITRIENRISLDQSHYIEKILKKYNYFDGKPACTPYDSSV 166

[Close]

BLAST of Cmc08g0232661 vs. NCBI nr
Match: TYK11906.1 (putative Polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 298.5 bits (763), Expect = 3.7e-77
Identity = 144/166 (86.75%), Postives = 152/166 (91.57%), Query Frame = 0


Query: 1   MDVKTAFLNCNLEEEIYMEQSKGFIVHGQESKVCKLDKFLYGLKQAPKQWHEKFDNLLMS 60
           MDVKTAFLNC+LEEEIYM+Q +GFIVHGQESKVCKLDK LYGLKQA KQWHEKFDNL MS
Sbjct: 88  MDVKTAFLNCDLEEEIYMKQFEGFIVHGQESKVCKLDKSLYGLKQASKQWHEKFDNLFMS 147

Query: 61  KGFKVNESDKCIYYKTEGRLCIIICLYIDDMLIFGSNLHVINDVKSMLSANFDMKDLGEV 120
           KGFKVNESDKCIYYK EGRLCIIICLY+DDMLIFGSNLHV+NDVKSM SAN DMKDLGE 
Sbjct: 148 KGFKVNESDKCIYYKNEGRLCIIICLYVDDMLIFGSNLHVVNDVKSMFSANLDMKDLGEA 207

Query: 121 DVILGIKITRTENRIFLYQSHYIEKILKKYNYFDSKLAYTPYECEI 167
           +VILGIKITRTEN IFL QSHYIEKILKKYNYFDSK A TPY+  +
Sbjct: 208 NVILGIKITRTENGIFLDQSHYIEKILKKYNYFDSKPARTPYDSSV 253

[Close]

BLAST of Cmc08g0232661 vs. NCBI nr
Match: KAA0036533.1 (retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa])

HSP 1 Score: 294.7 bits (753), Expect = 5.4e-76
Identity = 142/166 (85.54%), Postives = 153/166 (92.17%), Query Frame = 0


Query: 1   MDVKTAFLNCNLEEEIYMEQSKGFIVHGQESKVCKLDKFLYGLKQAPKQWHEKFDNLLMS 60
           MDVKT FLN +LEEEIYMEQ +GFIV  QESKVCKLDK LYGLKQAPK+WH+KFDNLLMS
Sbjct: 117 MDVKTTFLNGDLEEEIYMEQPEGFIVQAQESKVCKLDKSLYGLKQAPKEWHKKFDNLLMS 176

Query: 61  KGFKVNESDKCIYYKTEGRLCIIICLYIDDMLIFGSNLHVINDVKSMLSANFDMKDLGEV 120
           KGFKVNES+KCIYYKT+GRLCIIICLY+DDMLIFGSNLH+INDVKSMLSANFDMKDLGE 
Sbjct: 177 KGFKVNESNKCIYYKTKGRLCIIICLYVDDMLIFGSNLHIINDVKSMLSANFDMKDLGEA 236

Query: 121 DVILGIKITRTENRIFLYQSHYIEKILKKYNYFDSKLAYTPYECEI 167
           DVIL IKITRTEN IFL QSHYIEKILKKYNYFDSK A+TPY+  +
Sbjct: 237 DVILDIKITRTENGIFLDQSHYIEKILKKYNYFDSKSAFTPYDSSV 282

[Close]

BLAST of Cmc08g0232661 vs. NCBI nr
Match: TYK06419.1 (hypothetical protein E5676_scaffold163G001210 [Cucumis melo var. makuwa])

HSP 1 Score: 293.1 bits (749), Expect = 1.6e-75
Identity = 143/166 (86.14%), Postives = 153/166 (92.17%), Query Frame = 0


Query: 1   MDVKTAFLNCNLEEEIYMEQSKGFIVHGQESKVCKLDKFLYGLKQAPKQWHEKFDNLLMS 60
           MDVKTAFLN +LEEEIYMEQS+GFIVHGQESKVCKLDK LYGLKQAPKQWHEKFDNLL+S
Sbjct: 48  MDVKTAFLNGDLEEEIYMEQSEGFIVHGQESKVCKLDKSLYGLKQAPKQWHEKFDNLLLS 107

Query: 61  KGFKVNESDKCIYYKTEGRLCIIICLYIDDMLIFGSNLHVINDVKSMLSANFDMKDLGEV 120
           KGFKVNESDKCIYYKTEGRLCIIICLY+DD+LIFGSNL+VINDVKSMLS NFDMK+L E 
Sbjct: 108 KGFKVNESDKCIYYKTEGRLCIIICLYVDDILIFGSNLYVINDVKSMLSENFDMKELDEA 167

Query: 121 DVILGIKITRTENRIFLYQSHYIEKILKKYNYFDSKLAYTPYECEI 167
           DVILGIKITRT+N I L QSHYIEKILKKYNYFDSK   TPY+  +
Sbjct: 168 DVILGIKITRTKNGISLDQSHYIEKILKKYNYFDSKPTCTPYDSSV 213

[Close]

BLAST of Cmc08g0232661 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.8e-37
Identity = 83/165 (50.30%), Postives = 116/165 (70.30%), Query Frame = 0


Query: 1    MDVKTAFLNCNLEEEIYMEQSKGFIVHGQESKVCKLDKFLYGLKQAPKQWHEKFDNLLMS 60
            +DVKTAFL+ +LEEEIYMEQ +GF V G++  VCKL+K LYGLKQAP+QW+ KFD+ + S
Sbjct: 921  LDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKS 980

Query: 61   KGFKVNESDKCIYYK--TEGRLCIIICLYIDDMLIFGSNLHVINDVKSMLSANFDMKDLG 120
            + +    SD C+Y+K  +E    II+ LY+DDMLI G +  +I  +K  LS +FDMKDLG
Sbjct: 981  QTYLKTYSDPCVYFKRFSENNF-IILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLG 1040

Query: 121  EVDVILGIKIT--RTENRIFLYQSHYIEKILKKYNYFDSKLAYTP 162
                ILG+KI   RT  +++L Q  YIE++L+++N  ++K   TP
Sbjct: 1041 PAQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTP 1084

[Close]

BLAST of Cmc08g0232661 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 121.7 bits (304), Expect = 8.2e-27
Identity = 69/171 (40.35%), Postives = 99/171 (57.89%), Query Frame = 0


Query: 1    MDVKTAFLNCNLEEEIYMEQSKGFIVHGQESKVCKLDKFLYGLKQAPKQWHEKFDNLLMS 60
            MDVKTAFLN  L+EEIYM   +G  +      VCKL+K +YGLKQA + W E F+  L  
Sbjct: 1001 MDVKTAFLNGTLKEEIYMRLPQG--ISCNSDNVCKLNKAIYGLKQAARCWFEVFEQALKE 1060

Query: 61   KGFKVNESDKCIYYKTEGRL--CIIICLYIDDMLIFGSNLHVINDVKSMLSANFDMKDLG 120
              F  +  D+CIY   +G +   I + LY+DD++I   ++  +N+ K  L   F M DL 
Sbjct: 1061 CEFVNSSVDRCIYILDKGNINENIYVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLN 1120

Query: 121  EVDVILGIKITRTENRIFLYQSHYIEKILKKYNYFDSKLAYTPYECEIIQE 170
            E+   +GI+I   E++I+L QS Y++KIL K+N  +     TP   +I  E
Sbjct: 1121 EIKHFIGIRIEMQEDKIYLSQSAYVKKILSKFNMENCNAVSTPLPSKINYE 1169

[Close]

BLAST of Cmc08g0232661 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 2.5e-23
Identity = 58/161 (36.02%), Postives = 91/161 (56.52%), Query Frame = 0


Query: 1    MDVKTAFLNCNLEEEIYMEQSKGFIVHGQESKVCKLDKFLYGLKQAPKQWHEKFDNLLMS 60
            +DV  AFL   L +++YM Q  GFI   + + VCKL K LYGLKQAP+ W+ +  N L++
Sbjct: 1064 LDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRKALYGLKQAPRAWYVELRNYLLT 1123

Query: 61   KGFKVNESDKCIYYKTEGRLCIIICLYIDDMLIFGSNLHVINDVKSMLSANFDMKDLGEV 120
             GF  + SD  ++    G+  + + +Y+DD+LI G++  ++++    LS  F +KD  E+
Sbjct: 1124 IGFVNSVSDTSLFVLQRGKSIVYMLVYVDDILITGNDPTLLHNTLDNLSQRFSVKDHEEL 1183

Query: 121  DVILGIKITRTENRIFLYQSHYIEKILKKYNYFDSKLAYTP 162
               LGI+  R    + L Q  YI  +L + N   +K   TP
Sbjct: 1184 HYFLGIEAKRVPTGLHLSQRRYILDLLARTNMITAKPVTTP 1224

[Close]

BLAST of Cmc08g0232661 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 3.9e-21
Identity = 54/161 (33.54%), Postives = 86/161 (53.42%), Query Frame = 0


Query: 1    MDVKTAFLNCNLEEEIYMEQSKGFIVHGQESKVCKLDKFLYGLKQAPKQWHEKFDNLLMS 60
            +DV  AFL   L +E+YM Q  GF+   +   VC+L K +YGLKQAP+ W+ +    L++
Sbjct: 1047 LDVNNAFLQGTLTDEVYMSQPPGFVDKDRPDYVCRLRKAIYGLKQAPRAWYVELRTYLLT 1106

Query: 61   KGFKVNESDKCIYYKTEGRLCIIICLYIDDMLIFGSNLHVINDVKSMLSANFDMKDLGEV 120
             GF  + SD  ++    GR  I + +Y+DD+LI G++  ++      LS  F +K+  ++
Sbjct: 1107 VGFVNSISDTSLFVLQRGRSIIYMLVYVDDILITGNDTVLLKHTLDALSQRFSVKEHEDL 1166

Query: 121  DVILGIKITRTENRIFLYQSHYIEKILKKYNYFDSKLAYTP 162
               LGI+  R    + L Q  Y   +L + N   +K   TP
Sbjct: 1167 HYFLGIEAKRVPQGLHLSQRRYTLDLLARTNMLTAKPVATP 1207

[Close]

BLAST of Cmc08g0232661 vs. ExPASy Swiss-Prot
Match: P25600 (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5A PE=5 SV=2)

HSP 1 Score: 102.8 bits (255), Expect = 3.9e-21
Identity = 60/162 (37.04%), Postives = 89/162 (54.94%), Query Frame = 0


Query: 1   MDVKTAFLNCNLEEEIYMEQSKGFIVHGQESKVCKLDKFLYGLKQAPKQWHEKFDNLLMS 60
           MDV TAFLN  ++E IY++Q  GF+       V +L   +YGLKQAP  W+E  +N L  
Sbjct: 1   MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKK 60

Query: 61  KGFKVNESDKCIYYKTEGRLCIIICLYIDDMLIFGSNLHVINDVKSMLSANFDMKDLGEV 120
            GF  +E +  +Y+++     I I +Y+DD+L+   +  + + VK  L+  + MKDLG+V
Sbjct: 61  IGFCRHEGEHGLYFRSTSDGPIYIAVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGKV 120

Query: 121 DVILGIKITRTEN-RIFLYQSHYIEKILKKYNYFDSKLAYTP 162
           D  LG+ I ++ N  I L    YI K   +      KL  TP
Sbjct: 121 DKFLGLNIHQSSNGDITLSLQDYIAKAASESEINTFKLTQTP 162

[Close]

BLAST of Cmc08g0232661 vs. ExPASy TrEMBL
Match: A0A5D3D4T4 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00450 PE=4 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 2.8e-78
Identity = 147/166 (88.55%), Postives = 152/166 (91.57%), Query Frame = 0


Query: 1   MDVKTAFLNCNLEEEIYMEQSKGFIVHGQESKVCKLDKFLYGLKQAPKQWHEKFDNLLMS 60
           MDVKTAFLN +LEEEIYMEQ +GFIVH QESKVCKLDK LYGLKQAPKQWHEKFDNLLMS
Sbjct: 1   MDVKTAFLNGDLEEEIYMEQPEGFIVHNQESKVCKLDKSLYGLKQAPKQWHEKFDNLLMS 60

Query: 61  KGFKVNESDKCIYYKTEGRLCIIICLYIDDMLIFGSNLHVINDVKSMLSANFDMKDLGEV 120
           KGFKVNESDKCIYYKTEGRLCIIICLY+DDMLIFGSNLHVINDVKSMLS NFDMKDLGE 
Sbjct: 61  KGFKVNESDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHVINDVKSMLSVNFDMKDLGEA 120

Query: 121 DVILGIKITRTENRIFLYQSHYIEKILKKYNYFDSKLAYTPYECEI 167
           DVILGIKITRTEN IFL QSHYIEK LKKYNYFDSK   TPY+  +
Sbjct: 121 DVILGIKITRTENGIFLDQSHYIEKTLKKYNYFDSKPTCTPYDSSV 166

[Close]

BLAST of Cmc08g0232661 vs. ExPASy TrEMBL
Match: A0A5D3BJM0 (Putative Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold360G00660 PE=4 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 1.4e-77
Identity = 147/166 (88.55%), Postives = 152/166 (91.57%), Query Frame = 0


Query: 1   MDVKTAFLNCNLEEEIYMEQSKGFIVHGQESKVCKLDKFLYGLKQAPKQWHEKFDNLLMS 60
           MDVKTAFLN +LEEEIYMEQ  GFIVH QESKVCKLDKFLYGLKQAPKQW+EKFDNLLMS
Sbjct: 1   MDVKTAFLNGDLEEEIYMEQLIGFIVHDQESKVCKLDKFLYGLKQAPKQWYEKFDNLLMS 60

Query: 61  KGFKVNESDKCIYYKTEGRLCIIICLYIDDMLIFGSNLHVINDVKSMLSANFDMKDLGEV 120
           KGFKVNESDKCIYYKTEGRLCIIICLY+DDMLIFGSNLHVINDVKSM SANFDMKDLGE 
Sbjct: 61  KGFKVNESDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHVINDVKSMFSANFDMKDLGEA 120

Query: 121 DVILGIKITRTENRIFLYQSHYIEKILKKYNYFDSKLAYTPYECEI 167
           DVILGIKITR ENRI L QSHYIEKILKKYNYFD K A TPY+  +
Sbjct: 121 DVILGIKITRIENRISLDQSHYIEKILKKYNYFDGKPACTPYDSSV 166

[Close]

BLAST of Cmc08g0232661 vs. ExPASy TrEMBL
Match: A0A5D3CNA1 (Putative Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold177G00710 PE=4 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 1.8e-77
Identity = 144/166 (86.75%), Postives = 152/166 (91.57%), Query Frame = 0


Query: 1   MDVKTAFLNCNLEEEIYMEQSKGFIVHGQESKVCKLDKFLYGLKQAPKQWHEKFDNLLMS 60
           MDVKTAFLNC+LEEEIYM+Q +GFIVHGQESKVCKLDK LYGLKQA KQWHEKFDNL MS
Sbjct: 88  MDVKTAFLNCDLEEEIYMKQFEGFIVHGQESKVCKLDKSLYGLKQASKQWHEKFDNLFMS 147

Query: 61  KGFKVNESDKCIYYKTEGRLCIIICLYIDDMLIFGSNLHVINDVKSMLSANFDMKDLGEV 120
           KGFKVNESDKCIYYK EGRLCIIICLY+DDMLIFGSNLHV+NDVKSM SAN DMKDLGE 
Sbjct: 148 KGFKVNESDKCIYYKNEGRLCIIICLYVDDMLIFGSNLHVVNDVKSMFSANLDMKDLGEA 207

Query: 121 DVILGIKITRTENRIFLYQSHYIEKILKKYNYFDSKLAYTPYECEI 167
           +VILGIKITRTEN IFL QSHYIEKILKKYNYFDSK A TPY+  +
Sbjct: 208 NVILGIKITRTENGIFLDQSHYIEKILKKYNYFDSKPARTPYDSSV 253

[Close]

BLAST of Cmc08g0232661 vs. ExPASy TrEMBL
Match: A0A5A7T0X0 (Retrotransposon protein, putative, Ty1-copia subclass OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold191G00340 PE=4 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 2.6e-76
Identity = 142/166 (85.54%), Postives = 153/166 (92.17%), Query Frame = 0


Query: 1   MDVKTAFLNCNLEEEIYMEQSKGFIVHGQESKVCKLDKFLYGLKQAPKQWHEKFDNLLMS 60
           MDVKT FLN +LEEEIYMEQ +GFIV  QESKVCKLDK LYGLKQAPK+WH+KFDNLLMS
Sbjct: 117 MDVKTTFLNGDLEEEIYMEQPEGFIVQAQESKVCKLDKSLYGLKQAPKEWHKKFDNLLMS 176

Query: 61  KGFKVNESDKCIYYKTEGRLCIIICLYIDDMLIFGSNLHVINDVKSMLSANFDMKDLGEV 120
           KGFKVNES+KCIYYKT+GRLCIIICLY+DDMLIFGSNLH+INDVKSMLSANFDMKDLGE 
Sbjct: 177 KGFKVNESNKCIYYKTKGRLCIIICLYVDDMLIFGSNLHIINDVKSMLSANFDMKDLGEA 236

Query: 121 DVILGIKITRTENRIFLYQSHYIEKILKKYNYFDSKLAYTPYECEI 167
           DVIL IKITRTEN IFL QSHYIEKILKKYNYFDSK A+TPY+  +
Sbjct: 237 DVILDIKITRTENGIFLDQSHYIEKILKKYNYFDSKSAFTPYDSSV 282

[Close]

BLAST of Cmc08g0232661 vs. ExPASy TrEMBL
Match: A0A5D3C7T6 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G001210 PE=4 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 7.6e-76
Identity = 143/166 (86.14%), Postives = 153/166 (92.17%), Query Frame = 0


Query: 1   MDVKTAFLNCNLEEEIYMEQSKGFIVHGQESKVCKLDKFLYGLKQAPKQWHEKFDNLLMS 60
           MDVKTAFLN +LEEEIYMEQS+GFIVHGQESKVCKLDK LYGLKQAPKQWHEKFDNLL+S
Sbjct: 48  MDVKTAFLNGDLEEEIYMEQSEGFIVHGQESKVCKLDKSLYGLKQAPKQWHEKFDNLLLS 107

Query: 61  KGFKVNESDKCIYYKTEGRLCIIICLYIDDMLIFGSNLHVINDVKSMLSANFDMKDLGEV 120
           KGFKVNESDKCIYYKTEGRLCIIICLY+DD+LIFGSNL+VINDVKSMLS NFDMK+L E 
Sbjct: 108 KGFKVNESDKCIYYKTEGRLCIIICLYVDDILIFGSNLYVINDVKSMLSENFDMKELDEA 167

Query: 121 DVILGIKITRTENRIFLYQSHYIEKILKKYNYFDSKLAYTPYECEI 167
           DVILGIKITRT+N I L QSHYIEKILKKYNYFDSK   TPY+  +
Sbjct: 168 DVILGIKITRTKNGISLDQSHYIEKILKKYNYFDSKPTCTPYDSSV 213

[Close]

BLAST of Cmc08g0232661 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 101.3 bits (251), Expect = 8.1e-22
Identity = 56/167 (33.53%), Postives = 91/167 (54.49%), Query Frame = 0


Query: 1   MDVKTAFLNCNLEEEIYMEQSKGFIVHGQES----KVCKLDKFLYGLKQAPKQWHEKFDN 60
           +D+  AFLN +L+EEIYM+   G+     +S     VC L K +YGLKQA +QW  KF  
Sbjct: 193 LDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSV 252

Query: 61  LLMSKGFKVNESDKCIYYKTEGRLCIIICLYIDDMLIFGSNLHVINDVKSMLSANFDMKD 120
            L+  GF  + SD   + K    L + + +Y+DD++I  +N   ++++KS L + F ++D
Sbjct: 253 TLIGFGFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRD 312

Query: 121 LGEVDVILGIKITRTENRIFLYQSHYIEKILKKYNYFDSKLAYTPYE 164
           LG +   LG++I R+   I + Q  Y   +L +      K +  P +
Sbjct: 313 LGPLKYFLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMD 359

[Close]

BLAST of Cmc08g0232661 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 57.8 bits (138), Expect = 1.0e-08
Identity = 32/78 (41.03%), Postives = 46/78 (58.97%), Query Frame = 0


Query: 84  ICLYIDDMLIFGSNLHVINDVKSMLSANFDMKDLGEVDVILGIKITRTENRIFLYQSHYI 143
           + LY+DD+L+ GS+  ++N +   LS+ F MKDLG V   LGI+I    + +FL Q+ Y 
Sbjct: 3   LLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYA 62

Query: 144 EKILKKYNYFDSKLAYTP 162
           E+IL      D K   TP
Sbjct: 63  EQILNNAGMLDCKPMSTP 80

The following BLAST results are available for this feature:

BLAST of Cmc08g0232661 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0060459.1	5.7e-78	88.55	hypothetical protein E6C27_scaffold22G002870 [Cucumis melo var. makuwa] >TYK1854...	[more]
KAA0036466.1	2.8e-77	88.55	putative Polyprotein [Cucumis melo var. makuwa] >TYK00021.1 putative Polyprotein...	[more]
TYK11906.1	3.7e-77	86.75	putative Polyprotein [Cucumis melo var. makuwa]	[more]
KAA0036533.1	5.4e-76	85.54	retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa]	[more]
TYK06419.1	1.6e-75	86.14	hypothetical protein E5676_scaffold163G001210 [Cucumis melo var. makuwa]	[more]

BLAST of Cmc08g0232661 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.8e-37	50.30	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	8.2e-27	40.35	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q94HW2	2.5e-23	36.02	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	3.9e-21	33.54	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P25600	3.9e-21	37.04	Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain AT...	[more]

BLAST of Cmc08g0232661 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D4T4	2.8e-78	88.55	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo v...	[more]
A0A5D3BJM0	1.4e-77	88.55	Putative Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold360...	[more]
A0A5D3CNA1	1.8e-77	86.75	Putative Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold177...	[more]
A0A5A7T0X0	2.6e-76	85.54	Retrotransposon protein, putative, Ty1-copia subclass OS=Cucumis melo var. makuw...	[more]
A0A5D3C7T6	7.6e-76	86.14	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo v...	[more]

BLAST of Cmc08g0232661 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	8.1e-22	33.53	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	1.0e-08	41.03	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 1..162 e-value: 6.1E-50 score: 170.1
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 1..161
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..142

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0232661.1	Cmc08g0232661.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071897	DNA biosynthetic process
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003887	DNA-directed DNA polymerase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding