Cmc08g0232421 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0232421
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr08: 29148479 .. 29149083 (-)
RNA-Seq Expression	Cmc08g0232421
Synteny	Cmc08g0232421

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCTTTGGTTTGACAAATGCTCCTACCGTATTCATGAACTTGATGAACATGGTGTTTAAGGATTTCTTAGATTCGTTTGTTATAGTTTTTATTGAGATATCTTGGTTTACTCCAAGACAGAGGCCGAGCATGAGGAACATTTGCATCAAGTTTTGGGGACTCTTCGAGCTAATAAGTTGTATGCCAAGTTTTCCAAGTGTGAGTTCTGGCTGAAGAAGGTATCCTTTCTTGAACATGTGGTGTCAAGTGAGGGAGTTTATATAGACCCAGCAAAGATTGAAGTTGTTACTAGTTGGCCTCGAGTGGCTACAGTCAGCGAGATTCATAGTTTTCTAGGTCTAGCAAGTTATTACAGGAGGTTTTTGGAAGACTTCTCTCGTATAGCCAGTCCCTTGACTCAGTTGACCAGGAAGGGGACTCCTTTTGTTTGGAGCCCAACATGTGAGAGTAGTTTCAAGGAGCTTAAGAAGAAGCTTGTGACTGCGCCAGTTCTTACAGTGCCAGATGGATCTGGAAGTCTTGTGATCTACAGTGACGCCTTAAAGAAAGGACTGGGTTGCATTTTGATACAGCAAGGTAAGGTAGTTTATGTCTCTCGTTAG

mRNA sequence

ATGTCCTTTGGTTTGACAAATGCTCCTACCGTATTCATGAACTTGATGAACATGACAGAGGCCGAGCATGAGGAACATTTGCATCAAGTTTTGGGGACTCTTCGAGCTAATAAGTTGTATGCCAAGTTTTCCAAGTGTGAGTTCTGGCTGAAGAAGGTATCCTTTCTTGAACATGTGGTGTCAAGTGAGGGAGTTTATATAGACCCAGCAAAGATTGAAGTTGTTACTAGTTGGCCTCGAGTGGCTACAGTCAGCGAGATTCATAGTTTTCTAGGTCTAGCAAGTTATTACAGGAGGTTTTTGGAAGACTTCTCTCGTATAGCCAGTCCCTTGACTCAGTTGACCAGGAAGGGGACTCCTTTTGTTTGGAGCCCAACATGTGAGAGTAGTTTCAAGGAGCTTAAGAAGAAGCTTGTGACTGCGCCAGTTCTTACAGTGCCAGATGGATCTGGAAGTCTTGTGATCTACAGTGACGCCTTAAAGAAAGGACTGGGTTGCATTTTGATACAGCAAGGTAAGGTAGTTTATGTCTCTCGTTAG

Coding sequence (CDS)

ATGTCCTTTGGTTTGACAAATGCTCCTACCGTATTCATGAACTTGATGAACATGACAGAGGCCGAGCATGAGGAACATTTGCATCAAGTTTTGGGGACTCTTCGAGCTAATAAGTTGTATGCCAAGTTTTCCAAGTGTGAGTTCTGGCTGAAGAAGGTATCCTTTCTTGAACATGTGGTGTCAAGTGAGGGAGTTTATATAGACCCAGCAAAGATTGAAGTTGTTACTAGTTGGCCTCGAGTGGCTACAGTCAGCGAGATTCATAGTTTTCTAGGTCTAGCAAGTTATTACAGGAGGTTTTTGGAAGACTTCTCTCGTATAGCCAGTCCCTTGACTCAGTTGACCAGGAAGGGGACTCCTTTTGTTTGGAGCCCAACATGTGAGAGTAGTTTCAAGGAGCTTAAGAAGAAGCTTGTGACTGCGCCAGTTCTTACAGTGCCAGATGGATCTGGAAGTCTTGTGATCTACAGTGACGCCTTAAAGAAAGGACTGGGTTGCATTTTGATACAGCAAGGTAAGGTAGTTTATGTCTCTCGTTAG

Protein sequence

MSFGLTNAPTVFMNLMNMTEAEHEEHLHQVLGTLRANKLYAKFSKCEFWLKKVSFLEHVVSSEGVYIDPAKIEVVTSWPRVATVSEIHSFLGLASYYRRFLEDFSRIASPLTQLTRKGTPFVWSPTCESSFKELKKKLVTAPVLTVPDGSGSLVIYSDALKKGLGCILIQQGKVVYVSR

Homology

[Close]

BLAST of Cmc08g0232421 vs. NCBI nr
Match: KAA0067967.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 312.8 bits (800), Expect = 2.0e-81
Identity = 155/159 (97.48%), Postives = 156/159 (98.11%), Query Frame = 0


Query: 20  EAEHEEHLHQVLGTLRANKLYAKFSKCEFWLKKVSFLEHVVSSEGVYIDPAKIEVVTSWP 79
           EAEHEEHLHQVLGTLRANKLYAKFSKCEFWLKKVSFLEHVVSSEGVYIDPAKIEVVTSWP
Sbjct: 253 EAEHEEHLHQVLGTLRANKLYAKFSKCEFWLKKVSFLEHVVSSEGVYIDPAKIEVVTSWP 312

Query: 80  RVATVSEIHSFLGLASYYRRFLEDFSRIASPLTQLTRKGTPFVWSPTCESSFKELKKKLV 139
           RVATVSEIHSFLGLASYYRRFLEDFSRIASPLTQLTRKGTPFVWSPTCESSFKELKKKLV
Sbjct: 313 RVATVSEIHSFLGLASYYRRFLEDFSRIASPLTQLTRKGTPFVWSPTCESSFKELKKKLV 372

Query: 140 TAPVLTVPDGSGSLVIYSDALKKGLGCILIQQGKVVYVS 179
           TAPVLTVPDGSGSLVIYSDALKKGLGCILIQQGK   V+
Sbjct: 373 TAPVLTVPDGSGSLVIYSDALKKGLGCILIQQGKANVVA 411

[Close]

BLAST of Cmc08g0232421 vs. NCBI nr
Match: TYK18480.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 300.4 bits (768), Expect = 1.0e-77
Identity = 154/202 (76.24%), Postives = 165/202 (81.68%), Query Frame = 0


Query: 1   MSFGLTNAPTVFMNLMN----------------------MTEAEHEEHLHQVLGTLRANK 60
           MSFGLTNAP VFM+LMN                       TEAEHEEHLHQVL TLRANK
Sbjct: 251 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 310

Query: 61  LYAKFSKCEFWLKKVSFLEHVVSSEGVYIDPAKIEVVTSWPRVATVSEIHSFLGLASYYR 120
           LYAKFSKCEFWL+KV+FL HVVSSEGV +DP KIE VT+WPR +TVSEI SFLGLA YYR
Sbjct: 311 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPTKIEAVTNWPRPSTVSEIRSFLGLAGYYR 370

Query: 121 RFLEDFSRIASPLTQLTRKGTPFVWSPTCESSFKELKKKLVTAPVLTVPDGSGSLVIYSD 180
           RF+EDFSRIASPLTQLTRKGTPFVWSP CESSF+ELK+KLVTAPVLTVPDGSGS VIYSD
Sbjct: 371 RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPDGSGSFVIYSD 430

[Close]

BLAST of Cmc08g0232421 vs. NCBI nr
Match: KAA0051719.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 300.1 bits (767), Expect = 1.3e-77
Identity = 154/202 (76.24%), Postives = 167/202 (82.67%), Query Frame = 0


Query: 1   MSFGLTNAPTVFMNLMN----------------------MTEAEHEEHLHQVLGTLRANK 60
           MSFGLTNAP VFM+LMN                       TEAEHEEHLHQVL TLRANK
Sbjct: 673 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 732

Query: 61  LYAKFSKCEFWLKKVSFLEHVVSSEGVYIDPAKIEVVTSWPRVATVSEIHSFLGLASYYR 120
           LYAKFSKCEFWL+KV+FL HVVSSEGV +DPAKIE VT+WPR +TVSEI SFLGLA YYR
Sbjct: 733 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 792

Query: 121 RFLEDFSRIASPLTQLTRKGTPFVWSPTCESSFKELKKKLVTAPVLTVPDGSGSLVIYSD 180
           RF+EDFSRIASPLTQLTR+GTPFVWSPTCESSF++LK+KLVTAPVLTVPDGSGS VIYSD
Sbjct: 793 RFVEDFSRIASPLTQLTREGTPFVWSPTCESSFQKLKQKLVTAPVLTVPDGSGSFVIYSD 852

[Close]

BLAST of Cmc08g0232421 vs. NCBI nr
Match: KAA0066951.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 300.1 bits (767), Expect = 1.3e-77
Identity = 154/202 (76.24%), Postives = 166/202 (82.18%), Query Frame = 0


Query: 1   MSFGLTNAPTVFMNLMN----------------------MTEAEHEEHLHQVLGTLRANK 60
           MSFGLTNAP VFM+LMN                       TEAEHEEHLHQVL TLRANK
Sbjct: 521 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 580

Query: 61  LYAKFSKCEFWLKKVSFLEHVVSSEGVYIDPAKIEVVTSWPRVATVSEIHSFLGLASYYR 120
           LYAKFSKCEFWL+KV+FL HVVSSEGV +DPAKIE VT+WPR +TVSEI SFLGLA YYR
Sbjct: 581 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 640

Query: 121 RFLEDFSRIASPLTQLTRKGTPFVWSPTCESSFKELKKKLVTAPVLTVPDGSGSLVIYSD 180
           RF+EDFSRIASPLTQLTRKGTPFVWSP CESSF+ELK+KLVTAPVLTVPDGSG+ VIYSD
Sbjct: 641 RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPDGSGNFVIYSD 700

[Close]

BLAST of Cmc08g0232421 vs. NCBI nr
Match: TYK01306.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 300.1 bits (767), Expect = 1.3e-77
Identity = 154/202 (76.24%), Postives = 167/202 (82.67%), Query Frame = 0


Query: 1   MSFGLTNAPTVFMNLMN----------------------MTEAEHEEHLHQVLGTLRANK 60
           MSFGLTNAP VFM+LMN                       TEAEHEEHLHQVL TLRANK
Sbjct: 673 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 732

Query: 61  LYAKFSKCEFWLKKVSFLEHVVSSEGVYIDPAKIEVVTSWPRVATVSEIHSFLGLASYYR 120
           LYAKFSKCEFWL+KV+FL HVVSSEGV +DPAKIE VT+WPR +TVSEI SFLGLA YYR
Sbjct: 733 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 792

Query: 121 RFLEDFSRIASPLTQLTRKGTPFVWSPTCESSFKELKKKLVTAPVLTVPDGSGSLVIYSD 180
           RF+EDFSRIASPLTQLTR+GTPFVWSPTCESSF++LK+KLVTAPVLTVPDGSGS VIYSD
Sbjct: 793 RFVEDFSRIASPLTQLTREGTPFVWSPTCESSFQKLKQKLVTAPVLTVPDGSGSFVIYSD 852

[Close]

BLAST of Cmc08g0232421 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.3e-22
Identity = 67/203 (33.00%), Postives = 100/203 (49.26%), Query Frame = 0


Query: 1   MSFGLTNAPTVFMNLMN----------------------MTEAEHEEHLHQVLGTLRANK 60
           M FGL NAP  F   MN                       +  EH + L  V   L    
Sbjct: 334 MPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKAN 393

Query: 61  LYAKFSKCEFWLKKVSFLEHVVSSEGVYIDPAKIEVVTSWPRVATVSEIHSFLGLASYYR 120
           L  +  KCEF  ++ +FL HV++ +G+  +P KIE +  +P      EI +FLGL  YYR
Sbjct: 394 LKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYR 453

Query: 121 RFLEDFSRIASPLTQLTRKGTPF-VWSPTCESSFKELKKKLVTAPVLTVPDGSGSLVIYS 180
           +F+ +F+ IA P+T+  +K       +P  +S+FK+LK  +   P+L VPD +    + +
Sbjct: 454 KFIPNFADIAKPMTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVPDFTKKFTLTT 513

[Close]

BLAST of Cmc08g0232421 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 5.3e-21
Identity = 62/203 (30.54%), Postives = 97/203 (47.78%), Query Frame = 0


Query: 1   MSFGLTNAPTVFMNLMN----------------------MTEAEHEEHLHQVLGTLRANK 60
           M FGL NAP  F   MN                       +  EH   +  V   L    
Sbjct: 333 MPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADAN 392

Query: 61  LYAKFSKCEFWLKKVSFLEHVVSSEGVYIDPAKIEVVTSWPRVATVSEIHSFLGLASYYR 120
           L  +  KCEF  K+ +FL H+V+ +G+  +P K++ + S+P      EI +FLGL  YYR
Sbjct: 393 LKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYR 452

Query: 121 RFLEDFSRIASPLTQLTRKGTPF-VWSPTCESSFKELKKKLVTAPVLTVPDGSGSLVIYS 180
           +F+ +++ IA P+T   +K T           +F++LK  ++  P+L +PD     V+ +
Sbjct: 453 KFIPNYADIAKPMTSCLKKRTKIDTQKLEYIEAFEKLKALIIRDPILQLPDFEKKFVLTT 512

[Close]

BLAST of Cmc08g0232421 vs. ExPASy Swiss-Prot
Match: P92523 (Uncharacterized mitochondrial protein AtMg00860 OS=Arabidopsis thaliana OX=3702 GN=AtMg00860 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 9.0e-21
Identity = 49/125 (39.20%), Postives = 73/125 (58.40%), Query Frame = 0


Query: 26  HLHQVLGTLRANKLYAKFSKCEFWLKKVSFL--EHVVSSEGVYIDPAKIEVVTSWPRVAT 85
           HL  VL     ++ YA   KC F   ++++L   H++S EGV  DPAK+E +  WP    
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62

Query: 86  VSEIHSFLGLASYYRRFLEDFSRIASPLTQLTRKGTPFVWSPTCESSFKELKKKLVTAPV 145
            +E+  FLGL  YYRRF++++ +I  PLT+L +K +   W+     +FK LK  + T PV
Sbjct: 63  TTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNS-LKWTEMAALAFKALKGAVTTLPV 122

Query: 146 LTVPD 149
           L +PD
Sbjct: 123 LALPD 126

[Close]

BLAST of Cmc08g0232421 vs. ExPASy Swiss-Prot
Match: P10394 (Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster OX=7227 GN=POL PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 7.6e-20
Identity = 59/206 (28.64%), Postives = 96/206 (46.60%), Query Frame = 0


Query: 1   MSFGLTNAPTVFMNLMNM----------------------TEAEHEEHLHQVLGTLRANK 60
           + FGL  AP  F  +M +                      +E    ++L +V G  R   
Sbjct: 442 LPFGLKIAPNSFQRMMTIAFSGIEPSQAFLYMDDLIVIGCSEKHMLKNLTEVFGKCREYN 501

Query: 61  LYAKFSKCEFWLKKVSFLEHVVSSEGVYIDPAKIEVVTSWPRVATVSEIHSFLGLASYYR 120
           L     KC F++ +V+FL H  + +G+  D  K +V+ ++P          F+   +YYR
Sbjct: 502 LKLHPEKCSFFMHEVTFLGHKCTDKGILPDDKKYDVIQNYPVPHDADSARRFVAFCNYYR 561

Query: 121 RFLEDFSRIASPLTQLTRKGTPFVWSPTCESSFKELKKKLVTAPVLTVPDGSGSLVIYSD 180
           RF+++F+  +  +T+L +K  PF W+  C+ +F  LK +L+   +L  PD S    I +D
Sbjct: 562 RFIKNFADYSRHITRLCKKNVPFEWTDECQKAFIHLKSQLINPTLLQYPDFSKEFCITTD 621

[Close]

BLAST of Cmc08g0232421 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 9.9e-20
Identity = 62/217 (28.57%), Postives = 102/217 (47.00%), Query Frame = 0


Query: 1   MSFGLTNAPTVFMNLMNMTEAE----------------------HEEHLHQVLGTLRANK 60
           + FGL NAP +F  +++    E                      H ++L  VL +L    
Sbjct: 250 LPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKAN 309

Query: 61  LYAKFSKCEFWLKKVSFLEHVVSSEGVYIDPAKIEVVTSWPRVATVSEIHSFLGLASYYR 120
           L     K  F   +V FL ++V+++G+  DP K+  ++  P   +V E+  FLG+ SYYR
Sbjct: 310 LQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYR 369

Query: 121 RFLEDFSRIASPLTQLTR-----------KGTPFVWSPTCESSFKELKKKLVTAPVLTVP 180
           +F++D++++A PLT LTR              P     T   SF +LK  L ++ +L  P
Sbjct: 370 KFIQDYAKVAKPLTNLTRGLYANIKSSQSSKVPITLDETALQSFNDLKSILCSSEILAFP 429

[Close]

BLAST of Cmc08g0232421 vs. ExPASy TrEMBL
Match: A0A5A7VL71 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G001530 PE=4 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 9.5e-82
Identity = 155/159 (97.48%), Postives = 156/159 (98.11%), Query Frame = 0


Query: 20  EAEHEEHLHQVLGTLRANKLYAKFSKCEFWLKKVSFLEHVVSSEGVYIDPAKIEVVTSWP 79
           EAEHEEHLHQVLGTLRANKLYAKFSKCEFWLKKVSFLEHVVSSEGVYIDPAKIEVVTSWP
Sbjct: 253 EAEHEEHLHQVLGTLRANKLYAKFSKCEFWLKKVSFLEHVVSSEGVYIDPAKIEVVTSWP 312

Query: 80  RVATVSEIHSFLGLASYYRRFLEDFSRIASPLTQLTRKGTPFVWSPTCESSFKELKKKLV 139
           RVATVSEIHSFLGLASYYRRFLEDFSRIASPLTQLTRKGTPFVWSPTCESSFKELKKKLV
Sbjct: 313 RVATVSEIHSFLGLASYYRRFLEDFSRIASPLTQLTRKGTPFVWSPTCESSFKELKKKLV 372

Query: 140 TAPVLTVPDGSGSLVIYSDALKKGLGCILIQQGKVVYVS 179
           TAPVLTVPDGSGSLVIYSDALKKGLGCILIQQGK   V+
Sbjct: 373 TAPVLTVPDGSGSLVIYSDALKKGLGCILIQQGKANVVA 411

[Close]

BLAST of Cmc08g0232421 vs. ExPASy TrEMBL
Match: A0A5D3D4M7 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold607G00520 PE=4 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 4.9e-78
Identity = 154/202 (76.24%), Postives = 165/202 (81.68%), Query Frame = 0


Query: 1   MSFGLTNAPTVFMNLMN----------------------MTEAEHEEHLHQVLGTLRANK 60
           MSFGLTNAP VFM+LMN                       TEAEHEEHLHQVL TLRANK
Sbjct: 251 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 310

Query: 61  LYAKFSKCEFWLKKVSFLEHVVSSEGVYIDPAKIEVVTSWPRVATVSEIHSFLGLASYYR 120
           LYAKFSKCEFWL+KV+FL HVVSSEGV +DP KIE VT+WPR +TVSEI SFLGLA YYR
Sbjct: 311 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPTKIEAVTNWPRPSTVSEIRSFLGLAGYYR 370

Query: 121 RFLEDFSRIASPLTQLTRKGTPFVWSPTCESSFKELKKKLVTAPVLTVPDGSGSLVIYSD 180
           RF+EDFSRIASPLTQLTRKGTPFVWSP CESSF+ELK+KLVTAPVLTVPDGSGS VIYSD
Sbjct: 371 RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPDGSGSFVIYSD 430

[Close]

BLAST of Cmc08g0232421 vs. ExPASy TrEMBL
Match: A0A5A7UE01 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G001050 PE=4 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 6.4e-78
Identity = 154/202 (76.24%), Postives = 167/202 (82.67%), Query Frame = 0


Query: 1   MSFGLTNAPTVFMNLMN----------------------MTEAEHEEHLHQVLGTLRANK 60
           MSFGLTNAP VFM+LMN                       TEAEHEEHLHQVL TLRANK
Sbjct: 673 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 732

Query: 61  LYAKFSKCEFWLKKVSFLEHVVSSEGVYIDPAKIEVVTSWPRVATVSEIHSFLGLASYYR 120
           LYAKFSKCEFWL+KV+FL HVVSSEGV +DPAKIE VT+WPR +TVSEI SFLGLA YYR
Sbjct: 733 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 792

Query: 121 RFLEDFSRIASPLTQLTRKGTPFVWSPTCESSFKELKKKLVTAPVLTVPDGSGSLVIYSD 180
           RF+EDFSRIASPLTQLTR+GTPFVWSPTCESSF++LK+KLVTAPVLTVPDGSGS VIYSD
Sbjct: 793 RFVEDFSRIASPLTQLTREGTPFVWSPTCESSFQKLKQKLVTAPVLTVPDGSGSFVIYSD 852

[Close]

BLAST of Cmc08g0232421 vs. ExPASy TrEMBL
Match: A0A5A7VMR4 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold550G00890 PE=4 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 6.4e-78
Identity = 154/202 (76.24%), Postives = 166/202 (82.18%), Query Frame = 0


Query: 1   MSFGLTNAPTVFMNLMN----------------------MTEAEHEEHLHQVLGTLRANK 60
           MSFGLTNAP VFM+LMN                       TEAEHEEHLHQVL TLRANK
Sbjct: 521 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 580

Query: 61  LYAKFSKCEFWLKKVSFLEHVVSSEGVYIDPAKIEVVTSWPRVATVSEIHSFLGLASYYR 120
           LYAKFSKCEFWL+KV+FL HVVSSEGV +DPAKIE VT+WPR +TVSEI SFLGLA YYR
Sbjct: 581 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 640

Query: 121 RFLEDFSRIASPLTQLTRKGTPFVWSPTCESSFKELKKKLVTAPVLTVPDGSGSLVIYSD 180
           RF+EDFSRIASPLTQLTRKGTPFVWSP CESSF+ELK+KLVTAPVLTVPDGSG+ VIYSD
Sbjct: 641 RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPDGSGNFVIYSD 700

[Close]

BLAST of Cmc08g0232421 vs. ExPASy TrEMBL
Match: A0A5A7USG7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold339G002890 PE=4 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 6.4e-78
Identity = 154/202 (76.24%), Postives = 166/202 (82.18%), Query Frame = 0


Query: 1   MSFGLTNAPTVFMNLMN----------------------MTEAEHEEHLHQVLGTLRANK 60
           MSFGLTNAP VFM+LMN                       TEAEHEEHLHQVL TLRANK
Sbjct: 600 MSFGLTNAPAVFMDLMNRVFKDFIDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 659

Query: 61  LYAKFSKCEFWLKKVSFLEHVVSSEGVYIDPAKIEVVTSWPRVATVSEIHSFLGLASYYR 120
           LYAKFSKCEFWL+KV+FL HVVSSEGV +DPAKIE VT+WPR +TVSEI SFLGLA YYR
Sbjct: 660 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 719

Query: 121 RFLEDFSRIASPLTQLTRKGTPFVWSPTCESSFKELKKKLVTAPVLTVPDGSGSLVIYSD 180
           RF+EDFSRIASPLTQLTRKGTPFVWSP CESSF+ELK+KLVTAPVLTVPDGSG+ VIYSD
Sbjct: 720 RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPDGSGNFVIYSD 779

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BLAST of Cmc08g0232421 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 101.7 bits (252), Expect = 6.4e-22
Identity = 49/125 (39.20%), Postives = 73/125 (58.40%), Query Frame = 0


Query: 26  HLHQVLGTLRANKLYAKFSKCEFWLKKVSFL--EHVVSSEGVYIDPAKIEVVTSWPRVAT 85
           HL  VL     ++ YA   KC F   ++++L   H++S EGV  DPAK+E +  WP    
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62

Query: 86  VSEIHSFLGLASYYRRFLEDFSRIASPLTQLTRKGTPFVWSPTCESSFKELKKKLVTAPV 145
            +E+  FLGL  YYRRF++++ +I  PLT+L +K +   W+     +FK LK  + T PV
Sbjct: 63  TTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNS-LKWTEMAALAFKALKGAVTTLPV 122

Query: 146 LTVPD 149
           L +PD
Sbjct: 123 LALPD 126

The following BLAST results are available for this feature:

BLAST of Cmc08g0232421 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0067967.1	2.0e-81	97.48	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK18480.1	1.0e-77	76.24	pol protein [Cucumis melo var. makuwa]	[more]
KAA0051719.1	1.3e-77	76.24	pol protein [Cucumis melo var. makuwa]	[more]
KAA0066951.1	1.3e-77	76.24	pol protein [Cucumis melo var. makuwa]	[more]
TYK01306.1	1.3e-77	76.24	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc08g0232421 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04323	1.3e-22	33.00	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
P20825	5.3e-21	30.54	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P92523	9.0e-21	39.20	Uncharacterized mitochondrial protein AtMg00860 OS=Arabidopsis thaliana OX=3702 ...	[more]
P10394	7.6e-20	28.64	Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaste...	[more]
Q8I7P9	9.9e-20	28.57	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]

BLAST of Cmc08g0232421 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VL71	9.5e-82	97.48	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3D4M7	4.9e-78	76.24	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold607G00520 PE...	[more]
A0A5A7UE01	6.4e-78	76.24	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60...	[more]
A0A5A7VMR4	6.4e-78	76.24	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55...	[more]
A0A5A7USG7	6.4e-78	76.24	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold33...	[more]

BLAST of Cmc08g0232421 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	6.4e-22	39.20	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 15..66 e-value: 1.8E-12 score: 49.6
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 70..162 e-value: 4.0E-29 score: 102.4
IPR041577	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	PFAM	PF17919	RT_RNaseH_2	coord: 123..176 e-value: 5.8E-12 score: 45.5
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 22..153
None	No IPR available	PANTHER	PTHR24559:SF345	SUBFAMILY NOT NAMED	coord: 22..153
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..178

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0232421.1	Cmc08g0232421.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding