Cmc08g0232361 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0232361
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase Ty1/copia-type domain-containing protein
Location	CMiso1.1chr08: 29038773 .. 29039249 (+)
RNA-Seq Expression	Cmc08g0232361
Synteny	Cmc08g0232361

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATCTTGCTAATAACACAAGACCATATATAGCATTTTCAGTAAATTTGTTAGCAAGATATAGTTCTTCTCCAACAAAAAGACATTGGAATGGAGTTAAGCATGTACTTCGTTATCTTCGAGGGACAATTGACATGGGTTTGTTTTATTCAAATAAATCAAACTTTGATCTAGTTGTTTATGCGGATGCTAGATATTTATTTGATCCACACAAAGCAAGATCCCAAACAGGTTATCTGTTTACATGTGGAGGAACTGCTATATCTTGGCGATCTGTAAAGCAAACCATGACGGCCACTTCATCGAATCATGCAGAAATTCTTGCAATTCATGAAGCTAGTAGAGAATGTGTATGGTTGAGGTCAATGACTCATCATATTCGAGAAACATTTGGTTTGTTTTTCAGTAAAAATTTACCAACAATATTATTTGAAGATAATACCGCATGTATAGCACAAATCAAAGGAGGGATATAA

mRNA sequence

ATGTATCTTGCTAATAACACAAGACCATATATAGCATTTTCAGTAAATTTGTTAGCAAGATATAGTTCTTCTCCAACAAAAAGACATTGGAATGGAGTTAAGCATGTACTTCGTTATCTTCGAGGGACAATTGACATGGGTTTGTTTTATTCAAATAAATCAAACTTTGATCTAGTTGTTTATGCGGATGCTAGATATTTATTTGATCCACACAAAGCAAGATCCCAAACAGGTTATCTGTTTACATGTGGAGGAACTGCTATATCTTGGCGATCTGTAAAGCAAACCATGACGGCCACTTCATCGAATCATGCAGAAATTCTTGCAATTCATGAAGCTAGTAGAGAATGTGTATGGTTGAGGTCAATGACTCATCATATTCGAGAAACATTTGGTTTGTTTTTCAGTAAAAATTTACCAACAATATTATTTGAAGATAATACCGCATGTATAGCACAAATCAAAGGAGGGATATAA

Coding sequence (CDS)

ATGTATCTTGCTAATAACACAAGACCATATATAGCATTTTCAGTAAATTTGTTAGCAAGATATAGTTCTTCTCCAACAAAAAGACATTGGAATGGAGTTAAGCATGTACTTCGTTATCTTCGAGGGACAATTGACATGGGTTTGTTTTATTCAAATAAATCAAACTTTGATCTAGTTGTTTATGCGGATGCTAGATATTTATTTGATCCACACAAAGCAAGATCCCAAACAGGTTATCTGTTTACATGTGGAGGAACTGCTATATCTTGGCGATCTGTAAAGCAAACCATGACGGCCACTTCATCGAATCATGCAGAAATTCTTGCAATTCATGAAGCTAGTAGAGAATGTGTATGGTTGAGGTCAATGACTCATCATATTCGAGAAACATTTGGTTTGTTTTTCAGTAAAAATTTACCAACAATATTATTTGAAGATAATACCGCATGTATAGCACAAATCAAAGGAGGGATATAA

Protein sequence

MYLANNTRPYIAFSVNLLARYSSSPTKRHWNGVKHVLRYLRGTIDMGLFYSNKSNFDLVVYADARYLFDPHKARSQTGYLFTCGGTAISWRSVKQTMTATSSNHAEILAIHEASRECVWLRSMTHHIRETFGLFFSKNLPTILFEDNTACIAQIKGGI

Homology

[Close]

BLAST of Cmc08g0232361 vs. NCBI nr
Match: TYK21506.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 298.5 bits (763), Expect = 3.4e-77
Identity = 146/157 (92.99%), Postives = 148/157 (94.27%), Query Frame = 0


Query: 1   MYLANNTRPYIAFSVNLLARYSSSPTKRHWNGVKHVLRYLRGTIDMGLFYSNKSNFDLVV 60
           MYLANNTRP IAFSVNLLARYS SPTKRHWNGVKHVLRYLRGTIDMGLFYSNKSNFDLV 
Sbjct: 37  MYLANNTRPDIAFSVNLLARYSYSPTKRHWNGVKHVLRYLRGTIDMGLFYSNKSNFDLVG 96

Query: 61  YADARYLFDPHKARSQTGYLFTCGGTAISWRSVKQTMTATSSNHAEILAIHEASRECVWL 120
           YADA +L DPHKARSQTGYLFTC GTAISWRSVKQTMTATSSNHAEILAIHEASRECVWL
Sbjct: 97  YADAGHLSDPHKARSQTGYLFTCEGTAISWRSVKQTMTATSSNHAEILAIHEASRECVWL 156

Query: 121 RSMTHHIRETFGLFFSKNLPTILFEDNTACIAQIKGG 158
           RSMTH+IRET GL FSKNLPTILFEDNTACI QIKGG
Sbjct: 157 RSMTHYIRETCGLSFSKNLPTILFEDNTACITQIKGG 193

[Close]

BLAST of Cmc08g0232361 vs. NCBI nr
Match: KAA0067250.1 (Pol [Cucumis melo var. makuwa] >TYK10859.1 Pol [Cucumis melo var. makuwa])

HSP 1 Score: 292.4 bits (747), Expect = 2.4e-75
Identity = 145/157 (92.36%), Postives = 145/157 (92.36%), Query Frame = 0


Query: 1   MYLANNTRPYIAFSVNLLARYSSSPTKRHWNGVKHVLRYLRGTIDMGLFYSNKSNFDLVV 60
           M LANNTRP IAFSVNLLARYSSSPTKRHWNGVKHVLRYLRGTIDM LFYSNKSNFDLV 
Sbjct: 47  MCLANNTRPDIAFSVNLLARYSSSPTKRHWNGVKHVLRYLRGTIDMSLFYSNKSNFDLVG 106

Query: 61  YADARYLFDPHKARSQTGYLFTCGGTAISWRSVKQTMTATSSNHAEILAIHEASRECVWL 120
           YADA YL DP KARSQ GYLFT GGTAISWRSVKQTMTATSSNHAEILAIHE SRECVWL
Sbjct: 107 YADAGYLSDPDKARSQIGYLFTWGGTAISWRSVKQTMTATSSNHAEILAIHEVSRECVWL 166

Query: 121 RSMTHHIRETFGLFFSKNLPTILFEDNTACIAQIKGG 158
           RSMTHHIRET GL FSKNLPTILFEDNTACIAQIKGG
Sbjct: 167 RSMTHHIRETCGLSFSKNLPTILFEDNTACIAQIKGG 203

[Close]

BLAST of Cmc08g0232361 vs. NCBI nr
Match: ERM98543.1 (hypothetical protein AMTR_s04311p00004950, partial [Amborella trichopoda])

HSP 1 Score: 257.3 bits (656), Expect = 8.6e-65
Identity = 123/157 (78.34%), Postives = 134/157 (85.35%), Query Frame = 0


Query: 1   MYLANNTRPYIAFSVNLLARYSSSPTKRHWNGVKHVLRYLRGTIDMGLFYSNKSNFDLVV 60
           MYLAN TRP IAFSVNLLAR+SS+PT RHW G+KH+LRYL+GTID GLFYSN     L+ 
Sbjct: 59  MYLANCTRPDIAFSVNLLARFSSAPTYRHWKGIKHILRYLQGTIDKGLFYSNNCGSQLIG 118

Query: 61  YADARYLFDPHKARSQTGYLFTCGGTAISWRSVKQTMTATSSNHAEILAIHEASRECVWL 120
           YADA YL DPHKARSQTGYLFTCG TAISWRS KQT+ ATSSNHAEILAIHEASRECVWL
Sbjct: 119 YADAGYLSDPHKARSQTGYLFTCGDTAISWRSTKQTLVATSSNHAEILAIHEASRECVWL 178

Query: 121 RSMTHHIRETFGLFFSKNLPTILFEDNTACIAQIKGG 158
           RSMT HIR T GL  +K +PTIL+EDN ACIAQ+KGG
Sbjct: 179 RSMTQHIRGTCGLTSNKEVPTILYEDNAACIAQLKGG 215

[Close]

BLAST of Cmc08g0232361 vs. NCBI nr
Match: KAF7137709.1 (hypothetical protein RHSIM_Rhsim07G0041900 [Rhododendron simsii])

HSP 1 Score: 256.9 bits (655), Expect = 1.1e-64
Identity = 122/157 (77.71%), Postives = 134/157 (85.35%), Query Frame = 0


Query: 1    MYLANNTRPYIAFSVNLLARYSSSPTKRHWNGVKHVLRYLRGTIDMGLFYSNKSNFDLVV 60
            MYLAN TRP IAFSVNLLARYSS+PT+RHW G+KH+ RYLRGTID+GLFYSN S   L+ 
Sbjct: 986  MYLANCTRPDIAFSVNLLARYSSAPTQRHWKGIKHIFRYLRGTIDLGLFYSNGSASQLIG 1045

Query: 61   YADARYLFDPHKARSQTGYLFTCGGTAISWRSVKQTMTATSSNHAEILAIHEASRECVWL 120
            YADA YL DPHKARSQTGY+FTCGG AISWRSVKQT+TATSSNH+EI+AIHE SRECVWL
Sbjct: 1046 YADAGYLSDPHKARSQTGYVFTCGGAAISWRSVKQTLTATSSNHSEIIAIHETSRECVWL 1105

Query: 121  RSMTHHIRETFGLFFSKNLPTILFEDNTACIAQIKGG 158
            RSM  HIRE  GL   K+ PTIL+EDN ACI QIKGG
Sbjct: 1106 RSMIQHIREKCGLSSIKDCPTILYEDNAACITQIKGG 1142

[Close]

BLAST of Cmc08g0232361 vs. NCBI nr
Match: AQY61295.1 (Pol [Coffea arabica])

HSP 1 Score: 255.8 bits (652), Expect = 2.5e-64
Identity = 123/158 (77.85%), Postives = 139/158 (87.97%), Query Frame = 0


Query: 1    MYLANNTRPYIAFSVNLLARYSSSPTKRHWNGVKHVLRYLRGTIDMGLFYSNKSNFDLVV 60
            MYLAN TRP I+F+VNLLAR+SSSPT+RHWNG+KH+ RYL+GTID+GLFYSNKS  +LV 
Sbjct: 937  MYLANCTRPDISFAVNLLARFSSSPTRRHWNGIKHIFRYLQGTIDLGLFYSNKSKPELVG 996

Query: 61   YADARYLFDPHKARSQTGYLFTCGGTAISWRSVKQTMTATSSNHAEILAIHEASRECVWL 120
            YADA YL DPHKARSQTGYLFT GGTAISWRS KQ++ ATSSNHAEI+AIHEASRECVWL
Sbjct: 997  YADAGYLSDPHKARSQTGYLFTYGGTAISWRSTKQSLAATSSNHAEIIAIHEASRECVWL 1056

Query: 121  RSMTHHIRETFGLFFSK-NLPTILFEDNTACIAQIKGG 158
            RSMTH+IR+  GL   K N PTIL+EDN ACIAQ+KGG
Sbjct: 1057 RSMTHYIRKNCGLSSGKENPPTILYEDNAACIAQLKGG 1094

[Close]

BLAST of Cmc08g0232361 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 4.7e-21
Identity = 53/128 (41.41%), Postives = 73/128 (57.03%), Query Frame = 0


Query: 1   MYLANNTRPYIAFSVNLLARYSSSPTKRHWNGVKHVLRYLRGTIDMGLFYSNKSNFDLVV 60
           MYL   TRP +A +V +L++++S P   HW  +K VLRYL+ T   GL ++      LV 
Sbjct: 14  MYLMVVTRPDLAAAVGVLSQFASDPCPTHWQALKRVLRYLQSTQTYGLEFTRAGTAKLVG 73

Query: 61  YADARYLFDPHKARSQTGYLFTCGGTAISWRSVKQTMTATSSNHAEILAIHEASRECVWL 120
           Y+DA +  D    RS +GYLF   G  +SWRS KQ   A SS   E +A+ EA++E VWL
Sbjct: 74  YSDADWAGDVESRRSTSGYLFKLNGGCVSWRSKKQRTVALSSTEDEYMALSEATQEAVWL 133

Query: 121 RSMTHHIR 129
              T   +
Sbjct: 134 TVRTRRTK 141

[Close]

BLAST of Cmc08g0232361 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 96.7 bits (239), Expect = 2.6e-19
Identity = 56/155 (36.13%), Postives = 80/155 (51.61%), Query Frame = 0


Query: 1    MYLANNTRPYIAFSVNLLARYSSSPTKRHWNGVKHVLRYLRGTIDMGLFYSNKSNFD--L 60
            MY+   TRP +  +VN+L+RYSS      W  +K VLRYL+GTIDM L +     F+  +
Sbjct: 1189 MYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKNLAFENKI 1248

Query: 61   VVYADARYLFDPHKARSQTGYLFTC-GGTAISWRSVKQTMTATSSNHAEILAIHEASREC 120
            + Y D+ +       +S TGYLF       I W + +Q   A SS  AE +A+ EA RE 
Sbjct: 1249 IGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVREA 1308

Query: 121  VWLRSMTHHIRETFGLFFSKNLPTILFEDNTACIA 153
            +WL+ +   I            P  ++EDN  CI+
Sbjct: 1309 LWLKFLLTSIN------IKLENPIKIYEDNQGCIS 1337

[Close]

BLAST of Cmc08g0232361 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 8.2e-18
Identity = 52/121 (42.98%), Postives = 68/121 (56.20%), Query Frame = 0


Query: 1    MYLANNTRPYIAFSVNLLARYSSSPTKRHWNGVKHVLRYLRGTIDMGLFYSNKSNFDLVV 60
            MY    TRP IA +V +++R+  +P K HW  VK +LRYLRGT    L +   S+  L  
Sbjct: 1119 MYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFGG-SDPILKG 1178

Query: 61   YADARYLFDPHKARSQTGYLFTCGGTAISWRSVKQTMTATSSNHAEILAIHEASRECVWL 120
            Y DA    D    +S TGYLFT  G AISW+S  Q   A S+  AE +A  E  +E +WL
Sbjct: 1179 YTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWL 1238

Query: 121  R 122
            +
Sbjct: 1239 K 1238

[Close]

BLAST of Cmc08g0232361 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 3.1e-17
Identity = 51/141 (36.17%), Postives = 72/141 (51.06%), Query Frame = 0


Query: 7    TRPYIAFSVNLLARYSSSPTKRHWNGVKHVLRYLRGTIDMGLFYSNKSNFDLVVYADARY 66
            TRP ++++VN L++Y   PT  HWN +K VLRYL GT D G+F    +   L  Y+DA +
Sbjct: 1241 TRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFLKKGNTLSLHAYSDADW 1300

Query: 67   LFDPHKARSQTGYLFTCGGTAISWRSVKQTMTATSSNHAEILAIHEASRECVWLRSMTHH 126
              D     S  GY+   G   ISW S KQ     SS  AE  ++   S E  W+ S+   
Sbjct: 1301 AGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSELQWICSLLTE 1360

Query: 127  IRETFGLFFSKNLPTILFEDN 148
            +    G+  S   P +++ DN
Sbjct: 1361 L----GIQLSH--PPVIYCDN 1375

[Close]

BLAST of Cmc08g0232361 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.4e-14
Identity = 46/141 (32.62%), Postives = 72/141 (51.06%), Query Frame = 0


Query: 7    TRPYIAFSVNLLARYSSSPTKRHWNGVKHVLRYLRGTIDMGLFYSNKSNFDLVVYADARY 66
            TRP I+++VN L+++   PT+ H   +K +LRYL GT + G+F    +   L  Y+DA +
Sbjct: 1258 TRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLKKGNTLSLHAYSDADW 1317

Query: 67   LFDPHKARSQTGYLFTCGGTAISWRSVKQTMTATSSNHAEILAIHEASRECVWLRSMTHH 126
              D     S  GY+   G   ISW S KQ     SS  AE  ++   S E  W+ S+   
Sbjct: 1318 AGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSEMQWICSLLTE 1377

Query: 127  IRETFGLFFSKNLPTILFEDN 148
            +    G+  ++  P +++ DN
Sbjct: 1378 L----GIRLTR--PPVIYCDN 1392

[Close]

BLAST of Cmc08g0232361 vs. ExPASy TrEMBL
Match: A0A5D3DD63 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold518G00010 PE=4 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 1.6e-77
Identity = 146/157 (92.99%), Postives = 148/157 (94.27%), Query Frame = 0


Query: 1   MYLANNTRPYIAFSVNLLARYSSSPTKRHWNGVKHVLRYLRGTIDMGLFYSNKSNFDLVV 60
           MYLANNTRP IAFSVNLLARYS SPTKRHWNGVKHVLRYLRGTIDMGLFYSNKSNFDLV 
Sbjct: 37  MYLANNTRPDIAFSVNLLARYSYSPTKRHWNGVKHVLRYLRGTIDMGLFYSNKSNFDLVG 96

Query: 61  YADARYLFDPHKARSQTGYLFTCGGTAISWRSVKQTMTATSSNHAEILAIHEASRECVWL 120
           YADA +L DPHKARSQTGYLFTC GTAISWRSVKQTMTATSSNHAEILAIHEASRECVWL
Sbjct: 97  YADAGHLSDPHKARSQTGYLFTCEGTAISWRSVKQTMTATSSNHAEILAIHEASRECVWL 156

Query: 121 RSMTHHIRETFGLFFSKNLPTILFEDNTACIAQIKGG 158
           RSMTH+IRET GL FSKNLPTILFEDNTACI QIKGG
Sbjct: 157 RSMTHYIRETCGLSFSKNLPTILFEDNTACITQIKGG 193

[Close]

BLAST of Cmc08g0232361 vs. ExPASy TrEMBL
Match: A0A5D3CKU4 (Pol OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold231G00300 PE=4 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 1.2e-75
Identity = 145/157 (92.36%), Postives = 145/157 (92.36%), Query Frame = 0


Query: 1   MYLANNTRPYIAFSVNLLARYSSSPTKRHWNGVKHVLRYLRGTIDMGLFYSNKSNFDLVV 60
           M LANNTRP IAFSVNLLARYSSSPTKRHWNGVKHVLRYLRGTIDM LFYSNKSNFDLV 
Sbjct: 47  MCLANNTRPDIAFSVNLLARYSSSPTKRHWNGVKHVLRYLRGTIDMSLFYSNKSNFDLVG 106

Query: 61  YADARYLFDPHKARSQTGYLFTCGGTAISWRSVKQTMTATSSNHAEILAIHEASRECVWL 120
           YADA YL DP KARSQ GYLFT GGTAISWRSVKQTMTATSSNHAEILAIHE SRECVWL
Sbjct: 107 YADAGYLSDPDKARSQIGYLFTWGGTAISWRSVKQTMTATSSNHAEILAIHEVSRECVWL 166

Query: 121 RSMTHHIRETFGLFFSKNLPTILFEDNTACIAQIKGG 158
           RSMTHHIRET GL FSKNLPTILFEDNTACIAQIKGG
Sbjct: 167 RSMTHHIRETCGLSFSKNLPTILFEDNTACIAQIKGG 203

[Close]

BLAST of Cmc08g0232361 vs. ExPASy TrEMBL
Match: A0A2N9IR78 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS54505 PE=4 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 1.9e-65
Identity = 126/157 (80.25%), Postives = 135/157 (85.99%), Query Frame = 0


Query: 1   MYLANNTRPYIAFSVNLLARYSSSPTKRHWNGVKHVLRYLRGTIDMGLFYSNKSNFDLVV 60
           MYLAN TRP IAFSVNLLARYSS+PT RHWNGVKHVLRYLRGT DMGLFY NKSN  LV 
Sbjct: 378 MYLANCTRPDIAFSVNLLARYSSAPTLRHWNGVKHVLRYLRGTTDMGLFYPNKSNPQLVG 437

Query: 61  YADARYLFDPHKARSQTGYLFTCGGTAISWRSVKQTMTATSSNHAEILAIHEASRECVWL 120
           YADA YL DPHK RSQTGYLFTCG TAISWRSVKQT++ATSSNH+EI+AIHEASRECVWL
Sbjct: 438 YADAGYLSDPHKGRSQTGYLFTCGNTAISWRSVKQTISATSSNHSEIIAIHEASRECVWL 497

Query: 121 RSMTHHIRETFGLFFSKNLPTILFEDNTACIAQIKGG 158
           RS+  HIRE  GL   K+ PTIL+EDN ACI QI+GG
Sbjct: 498 RSVIQHIREKCGLSSIKDNPTILYEDNAACITQIRGG 534

[Close]

BLAST of Cmc08g0232361 vs. ExPASy TrEMBL
Match: A0A2N9HV99 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS43506 PE=4 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 1.9e-65
Identity = 126/157 (80.25%), Postives = 135/157 (85.99%), Query Frame = 0


Query: 1   MYLANNTRPYIAFSVNLLARYSSSPTKRHWNGVKHVLRYLRGTIDMGLFYSNKSNFDLVV 60
           MYLAN TRP IAFSVNLLARYSS+PT RHWNGVKHVLRYLRGT DMGLFY NKSN  LV 
Sbjct: 149 MYLANCTRPDIAFSVNLLARYSSAPTLRHWNGVKHVLRYLRGTTDMGLFYPNKSNPQLVG 208

Query: 61  YADARYLFDPHKARSQTGYLFTCGGTAISWRSVKQTMTATSSNHAEILAIHEASRECVWL 120
           YADA YL DPHK RSQTGYLFTCG TAISWRSVKQT++ATSSNH+EI+AIHEASRECVWL
Sbjct: 209 YADAGYLSDPHKGRSQTGYLFTCGNTAISWRSVKQTISATSSNHSEIIAIHEASRECVWL 268

Query: 121 RSMTHHIRETFGLFFSKNLPTILFEDNTACIAQIKGG 158
           RS+  HIRE  GL   K+ PTIL+EDN ACI QI+GG
Sbjct: 269 RSIIQHIREKCGLSSIKDNPTILYEDNVACITQIRGG 305

[Close]

BLAST of Cmc08g0232361 vs. ExPASy TrEMBL
Match: A0A2N9FE48 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS13021 PE=4 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 1.9e-65
Identity = 126/157 (80.25%), Postives = 135/157 (85.99%), Query Frame = 0


Query: 1   MYLANNTRPYIAFSVNLLARYSSSPTKRHWNGVKHVLRYLRGTIDMGLFYSNKSNFDLVV 60
           MYLAN TRP IAFSVNLLARYSS+PT RHWNGVKHVLRYLRGT DMGLFY NKSN  LV 
Sbjct: 149 MYLANCTRPDIAFSVNLLARYSSAPTLRHWNGVKHVLRYLRGTTDMGLFYPNKSNPQLVG 208

Query: 61  YADARYLFDPHKARSQTGYLFTCGGTAISWRSVKQTMTATSSNHAEILAIHEASRECVWL 120
           YADA YL DPHK RSQTGYLFTCG TAISWRSVKQT++ATSSNH+EI+AIHEASRECVWL
Sbjct: 209 YADAGYLSDPHKGRSQTGYLFTCGNTAISWRSVKQTISATSSNHSEIIAIHEASRECVWL 268

Query: 121 RSMTHHIRETFGLFFSKNLPTILFEDNTACIAQIKGG 158
           RS+  HIRE  GL   K+ PTIL+EDN ACI QI+GG
Sbjct: 269 RSVIQHIREKCGLSSIKDNPTILYEDNAACITQIRGG 305

[Close]

BLAST of Cmc08g0232361 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 97.4 bits (241), Expect = 1.1e-20
Identity = 59/151 (39.07%), Postives = 85/151 (56.29%), Query Frame = 0


Query: 1   MYLANNTRPYIAFSVNLLARYSSSPTKRHWNGVKHVLRYLRGTIDMGLFYSNKSNFDLVV 60
           MYL   TR  I+F+VN L+++S +P   H   V  +L Y++GT+  GLFYS+++   L V
Sbjct: 386 MYL-QITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQV 445

Query: 61  YADARYLFDPHKARSQTGYLFTCGGTAISWRSVKQTMTATSSNHAEILAIHEASRECVWL 120
           ++DA +       RS  GY    G + ISW+S KQ + + SS  AE  A+  A+ E +WL
Sbjct: 446 FSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWL 505

Query: 121 RSMTHHIRETFGLFFSKNLPTILFEDNTACI 152
                 ++    L  SK  PT+LF DNTA I
Sbjct: 506 AQFFRELQ----LPLSK--PTLLFCDNTAAI 529

[Close]

BLAST of Cmc08g0232361 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 66.2 bits (160), Expect = 2.6e-11
Identity = 35/113 (30.97%), Postives = 58/113 (51.33%), Query Frame = 0


Query: 7   TRPYIAFSVNLLARYSSSPTKRHWNGVKHVLRYLRGTIDMGLFYSNKSNFDLVVYADARY 66
           TRP I+++VN++ +    PT   ++ +K VLRY++GTI  GL+    S  ++  + D+ +
Sbjct: 113 TRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDW 172

Query: 67  LFDPHKARSQTGYLFTCGGTAISWRSVKQTMTATSSNHAEILAIHEASRECVW 120
                  RS TG+    G   ISW + +Q   + SS   E  A+   + E  W
Sbjct: 173 AGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

[Close]

BLAST of Cmc08g0232361 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 60.1 bits (144), Expect = 1.9e-09
Identity = 32/79 (40.51%), Postives = 46/79 (58.23%), Query Frame = 0


Query: 1  MYLANNTRPYIAFSVNLLARYSSSPTKRHWNGVKHVLRYLRGTIDMGLFYSNKSNFDLVV 60
          MYL   TRP + F+VN L+++SS+        V  VL Y++GT+  GLFYS  S+  L  
Sbjct: 1  MYL-TITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKA 60

Query: 61 YADARYLFDPHKARSQTGY 80
          +AD+ +   P   RS TG+
Sbjct: 61 FADSDWASCPDTRRSVTGF 78

The following BLAST results are available for this feature:

BLAST of Cmc08g0232361 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK21506.1	3.4e-77	92.99	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0067250.1	2.4e-75	92.36	Pol [Cucumis melo var. makuwa] >TYK10859.1 Pol [Cucumis melo var. makuwa]	[more]
ERM98543.1	8.6e-65	78.34	hypothetical protein AMTR_s04311p00004950, partial [Amborella trichopoda]	[more]
KAF7137709.1	1.1e-64	77.71	hypothetical protein RHSIM_Rhsim07G0041900 [Rhododendron simsii]	[more]
AQY61295.1	2.5e-64	77.85	Pol [Coffea arabica]	[more]

BLAST of Cmc08g0232361 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0CV72	4.7e-21	41.41	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]
P04146	2.6e-19	36.13	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P10978	8.2e-18	42.98	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q9ZT94	3.1e-17	36.17	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	1.4e-14	32.62	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]

BLAST of Cmc08g0232361 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DD63	1.6e-77	92.99	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3CKU4	1.2e-75	92.36	Pol OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold231G00300 PE=4 SV=1	[more]
A0A2N9IR78	1.9e-65	80.25	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatic...	[more]
A0A2N9HV99	1.9e-65	80.25	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatic...	[more]
A0A2N9FE48	1.9e-65	80.25	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatic...	[more]

BLAST of Cmc08g0232361 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	1.1e-20	39.07	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	2.6e-11	30.97	DNA/RNA polymerases superfamily protein	[more]
ATMG00240.1	1.9e-09	40.51	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439:SF308	SUBFAMILY NOT NAMED	coord: 5..83
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 5..83
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 59..155 e-value: 3.19087E-30 score: 104.858

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0232361.1	Cmc08g0232361.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding