Cmc08g0232291 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0232291
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Transposon Ty3-I Gag-Pol polyprotein
Location	CMiso1.1chr08: 28960153 .. 28960710 (-)
RNA-Seq Expression	Cmc08g0232291
Synteny	Cmc08g0232291

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTTTTGGTTTAACTAATGCTCCTAGTACATTTATGCGTTTGATGAATCATGTTTTAAGAGAATTTTTGGGAAATCTTTTTGTTGTTTACTTTGATGATATTTTGATTCATTCAAAGACTATGATTGAGCATAAGAAGCAAGTTAGGTCAACTTTAATTACACTTAGAAAAGAGAGACTCTATGCTAACTTAAGCAAGTGTAATTTCTGTATGAAAAAGGTTAACTTTCTTGGCTTCATAGTGGGTAAAAATGGAGCCGAAGTAGATGAAGAGAAAGTTAAGGCAATTAGAGAATGGCCAACACCCAAAAATGCAAGTGATGTTAGGAGTTTTCATGGTCTTGCTAGTTTCAATAGAAGATTCATAAAGAACTTTAGTGCTATAGCTGCACCATTGAATAATTTAGTGAAAAAGCATGTTGCCTTTGAATGGGGAGAAAAGCAAGAAAAAGCCTTCAAAGAACTTAAAGAAAAATTGATGAATGCACCATTACTCGTCTTGCCTAATTTTGAAAGAACATTTGAAATTGAGTGTGAGCAAGTGGGTTGGGCATAG

mRNA sequence

ATGCCTTTTGGTTTAACTAATGCTCCTAGTACATTTATGCGTTTGATGAATCATGTTTTAAGAGAATTTTTGGGAAATCTTTTTGTTGTTTACTTTGATGATATTTTGATTCATTCAAAGACTATGATTGAGCATAAGAAGCAAGTTAGGTCAACTTTAATTACACTTAGAAAAGAGAGACTCTATGCTAACTTAAGCAAGTGTAATTTCTGTATGAAAAAGGTTAACTTTCTTGGCTTCATAGTGGGTAAAAATGGAGCCGAAGTAGATGAAGAGAAAGTTAAGGCAATTAGAGAATGGCCAACACCCAAAAATGCAAGTGATGTTAGGAGTTTTCATGGTCTTGCTAGTTTCAATAGAAGATTCATAAAGAACTTTAGTGCTATAGCTGCACCATTGAATAATTTAGTGAAAAAGCATGTTGCCTTTGAATGGGGAGAAAAGCAAGAAAAAGCCTTCAAAGAACTTAAAGAAAAATTGATGAATGCACCATTACTCGTCTTGCCTAATTTTGAAAGAACATTTGAAATTGAGTGTGAGCAAGTGGGTTGGGCATAG

Coding sequence (CDS)

ATGCCTTTTGGTTTAACTAATGCTCCTAGTACATTTATGCGTTTGATGAATCATGTTTTAAGAGAATTTTTGGGAAATCTTTTTGTTGTTTACTTTGATGATATTTTGATTCATTCAAAGACTATGATTGAGCATAAGAAGCAAGTTAGGTCAACTTTAATTACACTTAGAAAAGAGAGACTCTATGCTAACTTAAGCAAGTGTAATTTCTGTATGAAAAAGGTTAACTTTCTTGGCTTCATAGTGGGTAAAAATGGAGCCGAAGTAGATGAAGAGAAAGTTAAGGCAATTAGAGAATGGCCAACACCCAAAAATGCAAGTGATGTTAGGAGTTTTCATGGTCTTGCTAGTTTCAATAGAAGATTCATAAAGAACTTTAGTGCTATAGCTGCACCATTGAATAATTTAGTGAAAAAGCATGTTGCCTTTGAATGGGGAGAAAAGCAAGAAAAAGCCTTCAAAGAACTTAAAGAAAAATTGATGAATGCACCATTACTCGTCTTGCCTAATTTTGAAAGAACATTTGAAATTGAGTGTGAGCAAGTGGGTTGGGCATAG

Protein sequence

MPFGLTNAPSTFMRLMNHVLREFLGNLFVVYFDDILIHSKTMIEHKKQVRSTLITLRKERLYANLSKCNFCMKKVNFLGFIVGKNGAEVDEEKVKAIREWPTPKNASDVRSFHGLASFNRRFIKNFSAIAAPLNNLVKKHVAFEWGEKQEKAFKELKEKLMNAPLLVLPNFERTFEIECEQVGWA

Homology

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BLAST of Cmc08g0232291 vs. NCBI nr
Match: XP_022151643.1 (uncharacterized protein LOC111019551 [Momordica charantia])

HSP 1 Score: 285.0 bits (728), Expect = 4.5e-73
Identity = 133/183 (72.68%), Postives = 156/183 (85.25%), Query Frame = 0


Query: 1   MPFGLTNAPSTFMRLMNHVLREFLGNLFVVYFDDILIHSKTMIEHKKQVRSTLITLRKER 60
           MPFGLTNAPSTFMRLMNHVLR+FLG   VVYFDDILI+S+T+ +H + VR  LI LRKE+
Sbjct: 194 MPFGLTNAPSTFMRLMNHVLRDFLGEFVVVYFDDILIYSRTLEDHVQHVRYVLIALRKEK 253

Query: 61  LYANLSKCNFCMKKVNFLGFIVGKNGAEVDEEKVKAIREWPTPKNASDVRSFHGLASFNR 120
           LYANL KCNFCM+ +NFLGF++ K G EVD EKVKAIREWPTPKNAS+++SFHGLA F R
Sbjct: 254 LYANLKKCNFCMEMINFLGFVISKQGVEVDTEKVKAIREWPTPKNASEIKSFHGLAGFYR 313

Query: 121 RFIKNFSAIAAPLNNLVKKHVAFEWGEKQEKAFKELKEKLMNAPLLVLPNFERTFEIECE 180
           RFI++FS+IAAPLN L+KKH+ FEWG+ Q+ AF ELK+KL NAPLL LPNFE TFEIEC+
Sbjct: 314 RFIRDFSSIAAPLNELIKKHMKFEWGKAQDCAFNELKDKLCNAPLLALPNFELTFEIECD 373

Query: 181 QVG 184
             G
Sbjct: 374 ANG 376

[Close]

BLAST of Cmc08g0232291 vs. NCBI nr
Match: KAA0032636.1 (Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 277.3 bits (708), Expect = 9.4e-71
Identity = 129/183 (70.49%), Postives = 158/183 (86.34%), Query Frame = 0


Query: 1   MPFGLTNAPSTFMRLMNHVLREFLGNLFVVYFDDILIHSKTMIEHKKQVRSTLITLRKER 60
           MPFGLTNAPSTFMRLMNHVL+E++G   VVYFDDIL++SK M +H   V++ L+ LR+E+
Sbjct: 530 MPFGLTNAPSTFMRLMNHVLKEYIGKFVVVYFDDILVYSKGMNDHILHVKTILLKLREEK 589

Query: 61  LYANLSKCNFCMKKVNFLGFIVGKNGAEVDEEKVKAIREWPTPKNASDVRSFHGLASFNR 120
           LYAN  KC+FC+++++FLGFIVGK+G +VDEEKVKAIREWPTP NAS+VRSFHGLASF R
Sbjct: 590 LYANFKKCSFCLEQIHFLGFIVGKDGVKVDEEKVKAIREWPTPTNASEVRSFHGLASFYR 649

Query: 121 RFIKNFSAIAAPLNNLVKKHVAFEWGEKQEKAFKELKEKLMNAPLLVLPNFERTFEIECE 180
           RFIK+FS+IA+PL  LVKKHV FEW EKQE AF ELKEKL+ AP L LPNF+++FEIEC+
Sbjct: 650 RFIKDFSSIASPLTELVKKHVKFEWKEKQENAFNELKEKLIKAPCLALPNFDKSFEIECD 709

Query: 181 QVG 184
           + G
Sbjct: 710 ESG 712

[Close]

BLAST of Cmc08g0232291 vs. NCBI nr
Match: XP_023553652.1 (uncharacterized protein LOC111811140 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 275.8 bits (704), Expect = 2.7e-70
Identity = 134/183 (73.22%), Postives = 151/183 (82.51%), Query Frame = 0


Query: 1   MPFGLTNAPSTFMRLMNHVLREFLGNLFVVYFDDILIHSKTMIEHKKQVRSTLITLRKER 60
           MPFGLTNAPSTFMRLMNHVLRE+LG   VVYFDDIL++SK++ +H   VR+ L TLR E 
Sbjct: 798 MPFGLTNAPSTFMRLMNHVLREYLGKFVVVYFDDILVYSKSLDDHITHVRNVLTTLRNEC 857

Query: 61  LYANLSKCNFCMKKVNFLGFIVGKNGAEVDEEKVKAIREWPTPKNASDVRSFHGLASFNR 120
           LY NL KC+FCM+KVNFLGF+V  NG EVDEEKVKAI+EWPTPKN S+VRSFHGLASF R
Sbjct: 858 LYVNLKKCSFCMEKVNFLGFVVSSNGVEVDEEKVKAIKEWPTPKNVSEVRSFHGLASFYR 917

Query: 121 RFIKNFSAIAAPLNNLVKKHVAFEWGEKQEKAFKELKEKLMNAPLLVLPNFERTFEIECE 180
           RFIKNFS IA+PLN LVKK+V+F W + QE AF  LKEKL  APLL LPNFE TFEIEC+
Sbjct: 918 RFIKNFSTIASPLNELVKKNVSFIWEKDQELAFTTLKEKLSYAPLLTLPNFESTFEIECD 977

Query: 181 QVG 184
             G
Sbjct: 978 ASG 980

[Close]

BLAST of Cmc08g0232291 vs. NCBI nr
Match: KAA0067527.1 (Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 275.0 bits (702), Expect = 4.7e-70
Identity = 128/183 (69.95%), Postives = 157/183 (85.79%), Query Frame = 0


Query: 1   MPFGLTNAPSTFMRLMNHVLREFLGNLFVVYFDDILIHSKTMIEHKKQVRSTLITLRKER 60
           MPFGLTNAPSTFMRLMNHVL+E++G   VVYFDDIL++SK + +H   V++ L+ LR+E+
Sbjct: 386 MPFGLTNAPSTFMRLMNHVLKEYIGKFVVVYFDDILVYSKGLNDHILHVKTILLKLREEK 445

Query: 61  LYANLSKCNFCMKKVNFLGFIVGKNGAEVDEEKVKAIREWPTPKNASDVRSFHGLASFNR 120
           LYAN  KC+FC+++++FLGFIVGK+G +VDEEKVKAIREWPTP NAS+VRSFHGLASF R
Sbjct: 446 LYANFKKCSFCLEQIHFLGFIVGKDGVKVDEEKVKAIREWPTPTNASEVRSFHGLASFYR 505

Query: 121 RFIKNFSAIAAPLNNLVKKHVAFEWGEKQEKAFKELKEKLMNAPLLVLPNFERTFEIECE 180
           RFIK+FS+IA+PL  LVKKHV FEW EKQE AF ELKEKL+ AP L LPNF+++FEIEC+
Sbjct: 506 RFIKDFSSIASPLTELVKKHVKFEWKEKQENAFNELKEKLIKAPCLALPNFDKSFEIECD 565

Query: 181 QVG 184
             G
Sbjct: 566 ASG 568

[Close]

BLAST of Cmc08g0232291 vs. NCBI nr
Match: TYK22420.1 (Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 275.0 bits (702), Expect = 4.7e-70
Identity = 128/183 (69.95%), Postives = 157/183 (85.79%), Query Frame = 0


Query: 1   MPFGLTNAPSTFMRLMNHVLREFLGNLFVVYFDDILIHSKTMIEHKKQVRSTLITLRKER 60
           MPFGLTNAPSTFMRLMNHVL+E++G   VVYFDDIL++SK + +H   V++ L+ LR+E+
Sbjct: 596 MPFGLTNAPSTFMRLMNHVLKEYIGKFVVVYFDDILVYSKGLNDHILHVKTILLKLREEK 655

Query: 61  LYANLSKCNFCMKKVNFLGFIVGKNGAEVDEEKVKAIREWPTPKNASDVRSFHGLASFNR 120
           LYAN  KC+FC+++++FLGFIVGK+G +VDEEKVKAIREWPTP NAS+VRSFHGLASF R
Sbjct: 656 LYANFKKCSFCLEQIHFLGFIVGKDGVKVDEEKVKAIREWPTPTNASEVRSFHGLASFYR 715

Query: 121 RFIKNFSAIAAPLNNLVKKHVAFEWGEKQEKAFKELKEKLMNAPLLVLPNFERTFEIECE 180
           RFIK+FS+IA+PL  LVKKHV FEW EKQE AF ELKEKL+ AP L LPNF+++FEIEC+
Sbjct: 716 RFIKDFSSIASPLTELVKKHVKFEWKEKQENAFNELKEKLIKAPCLALPNFDKSFEIECD 775

Query: 181 QVG 184
             G
Sbjct: 776 ASG 778

[Close]

BLAST of Cmc08g0232291 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 9.9e-31
Identity = 70/176 (39.77%), Postives = 105/176 (59.66%), Query Frame = 0


Query: 1   MPFGLTNAPSTFMRLMNHVLREFLGNLFVVYFDDILIHSKTMIEHKKQVRSTLITLRKER 60
           MPFGL NAP+TF R MN++LR  L    +VY DDI+I S ++ EH   ++     L    
Sbjct: 333 MPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADAN 392

Query: 61  LYANLSKCNFCMKKVNFLGFIVGKNGAEVDEEKVKAIREWPTPKNASDVRSFHGLASFNR 120
           L   L KC F  K+ NFLG IV  +G + +  KVKAI  +P P    ++R+F GL  + R
Sbjct: 393 LKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYR 452

Query: 121 RFIKNFSAIAAPLNNLVKKHVAFEWGEKQE-KAFKELKEKLMNAPLLVLPNFERTF 176
           +FI N++ IA P+ + +KK    +  + +  +AF++LK  ++  P+L LP+FE+ F
Sbjct: 453 KFIPNYADIAKPMTSCLKKRTKIDTQKLEYIEAFEKLKALIIRDPILQLPDFEKKF 508

[Close]

BLAST of Cmc08g0232291 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 8.4e-30
Identity = 68/196 (34.69%), Postives = 110/196 (56.12%), Query Frame = 0


Query: 1   MPFGLTNAPSTFMRLMNHVLREFLGNLFVVYFDDILIHSKTMIEHKKQVRSTLITLRKER 60
           +PFGL NAP+ F R+++ +LRE +G +  VY DDI++ S+    H K +R  L +L K  
Sbjct: 250 LPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKAN 309

Query: 61  LYANLSKCNFCMKKVNFLGFIVGKNGAEVDEEKVKAIREWPTPKNASDVRSFHGLASFNR 120
           L  NL K +F   +V FLG+IV  +G + D +KV+AI E P P +  +++ F G+ S+ R
Sbjct: 310 LQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYR 369

Query: 121 RFIKNFSAIAAPLNNLVK-----------KHVAFEWGEKQEKAFKELKEKLMNAPLLVLP 180
           +FI++++ +A PL NL +             V     E   ++F +LK  L ++ +L  P
Sbjct: 370 KFIQDYAKVAKPLTNLTRGLYANIKSSQSSKVPITLDETALQSFNDLKSILCSSEILAFP 429

Query: 181 NFERTFEIECEQVGWA 186
            F + F +  +   WA
Sbjct: 430 CFTKPFHLTTDASNWA 445

[Close]

BLAST of Cmc08g0232291 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 3.2e-29
Identity = 64/178 (35.96%), Postives = 106/178 (59.55%), Query Frame = 0


Query: 1   MPFGLTNAPSTFMRLMNHVLREFLGNLFVVYFDDILIHSKTMIEHKKQVRSTLITLRKER 60
           MPFGL NAP+TF R MN +LR  L    +VY DDI++ S ++ EH + +      L K  
Sbjct: 334 MPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKAN 393

Query: 61  LYANLSKCNFCMKKVNFLGFIVGKNGAEVDEEKVKAIREWPTPKNASDVRSFHGLASFNR 120
           L   L KC F  ++  FLG ++  +G + + EK++AI+++P P    ++++F GL  + R
Sbjct: 394 LKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYR 453

Query: 121 RFIKNFSAIAAPLNNLVKKHVAFE-WGEKQEKAFKELKEKLMNAPLLVLPNFERTFEI 178
           +FI NF+ IA P+   +KK++  +    + + AFK+LK  +   P+L +P+F + F +
Sbjct: 454 KFIPNFADIAKPMTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVPDFTKKFTL 511

[Close]

BLAST of Cmc08g0232291 vs. ExPASy Swiss-Prot
Match: P10401 (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 4.2e-29
Identity = 73/189 (38.62%), Postives = 111/189 (58.73%), Query Frame = 0


Query: 1   MPFGLTNAPSTFMRLMNHVLREFLGNLFVVYFDDILIHSKTMIEHKKQVRSTLITLRKER 60
           +PFGL NA S F R ++ VLRE +G +  VY DD++I S+   +H + + + L  L    
Sbjct: 309 LPFGLRNASSIFQRALDDVLREQIGKICYVYVDDVIIFSENESDHVRHIDTVLKCLIDAN 368

Query: 61  LYANLSKCNFCMKKVNFLGFIVGKNGAEVDEEKVKAIREWPTPKNASDVRSFHGLASFNR 120
           +  +  K  F  + V +LGFIV K+G + D EKVKAI+E+P P     VRSF GLAS+ R
Sbjct: 369 MRVSQEKTRFFKESVEYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYKVRSFLGLASYYR 428

Query: 121 RFIKNFSAIAAPLNNLVK-----------KHVAFEWGEKQEKAFKELKEKLMNAP-LLVL 178
            FIK+F+AIA P+ +++K           K +  E+ E Q  AF+ L+  L +   +L  
Sbjct: 429 VFIKDFAAIARPITDILKGENGSVSKHMSKKIPVEFNETQRNAFQRLRNILASEDVILKY 488

[Close]

BLAST of Cmc08g0232291 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 3.5e-28
Identity = 63/180 (35.00%), Postives = 103/180 (57.22%), Query Frame = 0


Query: 1   MPFGLTNAPSTFMRLMNHVLREFLGNLFVVYFDDILIHSKTMIEHKKQVRSTLITLRKER 60
           MP+G++ AP+ F   +N +L E   +  V Y DDILIHSK+  EH K V+  L  L+   
Sbjct: 534 MPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNAN 593

Query: 61  LYANLSKCNFCMKKVNFLGFIVGKNGAEVDEEKVKAIREWPTPKNASDVRSFHGLASFNR 120
           L  N +KC F   +V F+G+ + + G    +E +  + +W  PKN  ++R F G  ++ R
Sbjct: 594 LIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLR 653

Query: 121 RFIKNFSAIAAPLNNLVKKHVAFEWGEKQEKAFKELKEKLMNAPLLVLPNFERTFEIECE 180
           +FI   S +  PLNNL+KK V ++W   Q +A + +K+ L++ P+L   +F +   +E +
Sbjct: 654 KFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETD 713

[Close]

BLAST of Cmc08g0232291 vs. ExPASy TrEMBL
Match: A0A6J1DCS9 (uncharacterized protein LOC111019551 OS=Momordica charantia OX=3673 GN=LOC111019551 PE=4 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 2.2e-73
Identity = 133/183 (72.68%), Postives = 156/183 (85.25%), Query Frame = 0


Query: 1   MPFGLTNAPSTFMRLMNHVLREFLGNLFVVYFDDILIHSKTMIEHKKQVRSTLITLRKER 60
           MPFGLTNAPSTFMRLMNHVLR+FLG   VVYFDDILI+S+T+ +H + VR  LI LRKE+
Sbjct: 194 MPFGLTNAPSTFMRLMNHVLRDFLGEFVVVYFDDILIYSRTLEDHVQHVRYVLIALRKEK 253

Query: 61  LYANLSKCNFCMKKVNFLGFIVGKNGAEVDEEKVKAIREWPTPKNASDVRSFHGLASFNR 120
           LYANL KCNFCM+ +NFLGF++ K G EVD EKVKAIREWPTPKNAS+++SFHGLA F R
Sbjct: 254 LYANLKKCNFCMEMINFLGFVISKQGVEVDTEKVKAIREWPTPKNASEIKSFHGLAGFYR 313

Query: 121 RFIKNFSAIAAPLNNLVKKHVAFEWGEKQEKAFKELKEKLMNAPLLVLPNFERTFEIECE 180
           RFI++FS+IAAPLN L+KKH+ FEWG+ Q+ AF ELK+KL NAPLL LPNFE TFEIEC+
Sbjct: 314 RFIRDFSSIAAPLNELIKKHMKFEWGKAQDCAFNELKDKLCNAPLLALPNFELTFEIECD 373

Query: 181 QVG 184
             G
Sbjct: 374 ANG 376

[Close]

BLAST of Cmc08g0232291 vs. ExPASy TrEMBL
Match: A0A5A7SRG3 (Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold184G00210 PE=4 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 4.6e-71
Identity = 129/183 (70.49%), Postives = 158/183 (86.34%), Query Frame = 0


Query: 1   MPFGLTNAPSTFMRLMNHVLREFLGNLFVVYFDDILIHSKTMIEHKKQVRSTLITLRKER 60
           MPFGLTNAPSTFMRLMNHVL+E++G   VVYFDDIL++SK M +H   V++ L+ LR+E+
Sbjct: 530 MPFGLTNAPSTFMRLMNHVLKEYIGKFVVVYFDDILVYSKGMNDHILHVKTILLKLREEK 589

Query: 61  LYANLSKCNFCMKKVNFLGFIVGKNGAEVDEEKVKAIREWPTPKNASDVRSFHGLASFNR 120
           LYAN  KC+FC+++++FLGFIVGK+G +VDEEKVKAIREWPTP NAS+VRSFHGLASF R
Sbjct: 590 LYANFKKCSFCLEQIHFLGFIVGKDGVKVDEEKVKAIREWPTPTNASEVRSFHGLASFYR 649

Query: 121 RFIKNFSAIAAPLNNLVKKHVAFEWGEKQEKAFKELKEKLMNAPLLVLPNFERTFEIECE 180
           RFIK+FS+IA+PL  LVKKHV FEW EKQE AF ELKEKL+ AP L LPNF+++FEIEC+
Sbjct: 650 RFIKDFSSIASPLTELVKKHVKFEWKEKQENAFNELKEKLIKAPCLALPNFDKSFEIECD 709

Query: 181 QVG 184
           + G
Sbjct: 710 ESG 712

[Close]

BLAST of Cmc08g0232291 vs. ExPASy TrEMBL
Match: A0A5A7VK67 (Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold50G00500 PE=4 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 2.3e-70
Identity = 128/183 (69.95%), Postives = 157/183 (85.79%), Query Frame = 0


Query: 1   MPFGLTNAPSTFMRLMNHVLREFLGNLFVVYFDDILIHSKTMIEHKKQVRSTLITLRKER 60
           MPFGLTNAPSTFMRLMNHVL+E++G   VVYFDDIL++SK + +H   V++ L+ LR+E+
Sbjct: 386 MPFGLTNAPSTFMRLMNHVLKEYIGKFVVVYFDDILVYSKGLNDHILHVKTILLKLREEK 445

Query: 61  LYANLSKCNFCMKKVNFLGFIVGKNGAEVDEEKVKAIREWPTPKNASDVRSFHGLASFNR 120
           LYAN  KC+FC+++++FLGFIVGK+G +VDEEKVKAIREWPTP NAS+VRSFHGLASF R
Sbjct: 446 LYANFKKCSFCLEQIHFLGFIVGKDGVKVDEEKVKAIREWPTPTNASEVRSFHGLASFYR 505

Query: 121 RFIKNFSAIAAPLNNLVKKHVAFEWGEKQEKAFKELKEKLMNAPLLVLPNFERTFEIECE 180
           RFIK+FS+IA+PL  LVKKHV FEW EKQE AF ELKEKL+ AP L LPNF+++FEIEC+
Sbjct: 506 RFIKDFSSIASPLTELVKKHVKFEWKEKQENAFNELKEKLIKAPCLALPNFDKSFEIECD 565

Query: 181 QVG 184
             G
Sbjct: 566 ASG 568

[Close]

BLAST of Cmc08g0232291 vs. ExPASy TrEMBL
Match: A0A5D3DRJ1 (F15O4.13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold111G00130 PE=4 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 2.3e-70
Identity = 128/183 (69.95%), Postives = 157/183 (85.79%), Query Frame = 0


Query: 1   MPFGLTNAPSTFMRLMNHVLREFLGNLFVVYFDDILIHSKTMIEHKKQVRSTLITLRKER 60
           MPFGLTNAPSTFMRLMNHVL+E++G   VVYFDDIL++SK + +H   V++ L+ LR+E+
Sbjct: 697 MPFGLTNAPSTFMRLMNHVLKEYIGKFVVVYFDDILVYSKGLNDHILHVKTILLKLREEK 756

Query: 61  LYANLSKCNFCMKKVNFLGFIVGKNGAEVDEEKVKAIREWPTPKNASDVRSFHGLASFNR 120
           LYAN  KC+FC+++++FLGFIVGK+G +VDEEKVKAIREWPTP NAS+VRSFHGLASF R
Sbjct: 757 LYANFKKCSFCLEQIHFLGFIVGKDGVKVDEEKVKAIREWPTPTNASEVRSFHGLASFYR 816

Query: 121 RFIKNFSAIAAPLNNLVKKHVAFEWGEKQEKAFKELKEKLMNAPLLVLPNFERTFEIECE 180
           RFIK+FS+IA+PL  LVKKHV FEW EKQE AF ELKEKL+ AP L LPNF+++FEIEC+
Sbjct: 817 RFIKDFSSIASPLTELVKKHVKFEWKEKQENAFNELKEKLIKAPCLALPNFDKSFEIECD 876

Query: 181 QVG 184
             G
Sbjct: 877 ASG 879

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BLAST of Cmc08g0232291 vs. ExPASy TrEMBL
Match: A0A5D3C3D3 (F15O4.13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G001490 PE=4 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 2.3e-70
Identity = 128/183 (69.95%), Postives = 157/183 (85.79%), Query Frame = 0


Query: 1   MPFGLTNAPSTFMRLMNHVLREFLGNLFVVYFDDILIHSKTMIEHKKQVRSTLITLRKER 60
           MPFGLTNAPSTFMRLMNHVL+E++G   VVYFDDIL++SK + +H   V++ L+ LR+E+
Sbjct: 697 MPFGLTNAPSTFMRLMNHVLKEYIGKFVVVYFDDILVYSKGLNDHILHVKTILLKLREEK 756

Query: 61  LYANLSKCNFCMKKVNFLGFIVGKNGAEVDEEKVKAIREWPTPKNASDVRSFHGLASFNR 120
           LYAN  KC+FC+++++FLGFIVGK+G +VDEEKVKAIREWPTP NAS+VRSFHGLASF R
Sbjct: 757 LYANFKKCSFCLEQIHFLGFIVGKDGVKVDEEKVKAIREWPTPTNASEVRSFHGLASFYR 816

Query: 121 RFIKNFSAIAAPLNNLVKKHVAFEWGEKQEKAFKELKEKLMNAPLLVLPNFERTFEIECE 180
           RFIK+FS+IA+PL  LVKKHV FEW EKQE AF ELKEKL+ AP L LPNF+++FEIEC+
Sbjct: 817 RFIKDFSSIASPLTELVKKHVKFEWKEKQENAFNELKEKLIKAPCLALPNFDKSFEIECD 876

Query: 181 QVG 184
             G
Sbjct: 877 ASG 879

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BLAST of Cmc08g0232291 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 91.7 bits (226), Expect = 6.8e-19
Identity = 46/130 (35.38%), Postives = 71/130 (54.62%), Query Frame = 0


Query: 58  KERLYANLSKCNFCMKKVNFLG--FIVGKNGAEVDEEKVKAIREWPTPKNASDVRSFHGL 117
           + + YAN  KC F   ++ +LG   I+   G   D  K++A+  WP PKN +++R F GL
Sbjct: 13  QHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKNTTELRGFLGL 72

Query: 118 ASFNRRFIKNFSAIAAPLNNLVKKHVAFEWGEKQEKAFKELKEKLMNAPLLVLPNFERTF 177
             + RRF+KN+  I  PL  L+KK+ + +W E    AFK LK  +   P+L LP+ +  F
Sbjct: 73  TGYYRRFVKNYGKIVRPLTELLKKN-SLKWTEMAALAFKALKGAVTTLPVLALPDLKLPF 132

Query: 178 EIECEQVGWA 186
                +  W+
Sbjct: 133 VTRVGKWNWS 141

The following BLAST results are available for this feature:

BLAST of Cmc08g0232291 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022151643.1	4.5e-73	72.68	uncharacterized protein LOC111019551 [Momordica charantia]	[more]
KAA0032636.1	9.4e-71	70.49	Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]	[more]
XP_023553652.1	2.7e-70	73.22	uncharacterized protein LOC111811140 [Cucurbita pepo subsp. pepo]	[more]
KAA0067527.1	4.7e-70	69.95	Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]	[more]
TYK22420.1	4.7e-70	69.95	Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc08g0232291 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P20825	9.9e-31	39.77	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
Q8I7P9	8.4e-30	34.69	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
P04323	3.2e-29	35.96	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
P10401	4.2e-29	38.62	Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogas...	[more]
P0CT41	3.5e-28	35.00	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]

BLAST of Cmc08g0232291 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DCS9	2.2e-73	72.68	uncharacterized protein LOC111019551 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]
A0A5A7SRG3	4.6e-71	70.49	Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5A7VK67	2.3e-70	69.95	Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5D3DRJ1	2.3e-70	69.95	F15O4.13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold111G00130 PE=4 ...	[more]
A0A5D3C3D3	2.3e-70	69.95	F15O4.13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G001490 PE=4...	[more]

BLAST of Cmc08g0232291 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	6.8e-19	35.38	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 91..175 e-value: 2.5E-30 score: 106.3
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 1..82 e-value: 7.5E-30 score: 105.6
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 1..82 e-value: 4.6E-16 score: 59.0
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 1..82 score: 11.806974
IPR041577	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	PFAM	PF17919	RT_RNaseH_2	coord: 145..180 e-value: 3.0E-8 score: 33.6
None	No IPR available	PANTHER	PTHR47266	FAMILY NOT NAMED	coord: 1..169
None	No IPR available	CDD	cd01647	RT_LTR	coord: 1..82 e-value: 5.81091E-36 score: 121.934
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..181

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0232291.1	Cmc08g0232291.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding