Cmc08g0232211 (gene) Melon (Charmono) v1.1

Overview
NameCmc08g0232211
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
LocationCMiso1.1chr08: 28648751 .. 28649212 (-)
RNA-Seq ExpressionCmc08g0232211
SyntenyCmc08g0232211
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGAAAGAGTTTCTTGATGTATTTCCAGATGATCTGTCAGGTTTGCCACCTTATAAAGAGATTGAGTTCACTACTGAATTGTTACTAGGAACAACACCTATTTCACAGGCACCGTATAAAATGGCTCCGAGCGAGCTTAAAGAATTGGAGGTGCAATTACAAGAACTGGTTGACAAGGGATACATCAGGCCTAGTGTATCGCCTTGGGGAGCACCAATGCTATTTGTGAAAAGCATAGATGGTACTCTTAGATTATGTATTGATTATAGACAGTTAAACAAGGTTACAATATGTAACAAGTATCCTTTACCACACATCGATGACTTATTTGATCAGCTAAGAGGAACAACATTGTTCTCTAAGATTGACTTAAGATCAGGATACCACCAGTTGAAGGTTAAAGAATCAGATATTCCTAAGACAACATTCAGAACGAGGTATGGGCACTATGAGTTCTGA

mRNA sequence

ATGGTGAAAGAGTTTCTTGATGTATTTCCAGATGATCTGTCAGGTTTGCCACCTTATAAAGAGATTGAGTTCACTACTGAATTGTTACTAGGAACAACACCTATTTCACAGGCACCGTATAAAATGGCTCCGAGCGAGCTTAAAGAATTGGAGGTGCAATTACAAGAACTGGTTGACAAGGGATACATCAGGCCTAGTGTATCGCCTTGGGGAGCACCAATGCTATTTGTGAAAAGCATAGATGGTACTCTTAGATTATGTATTGATTATAGACAGTTAAACAAGGTTACAATATGTAACAAGTATCCTTTACCACACATCGATGACTTATTTGATCAGCTAAGAGGAACAACATTGTTCTCTAAGATTGACTTAAGATCAGGATACCACCAGTTGAAGGTTAAAGAATCAGATATTCCTAAGACAACATTCAGAACGAGGTATGGGCACTATGAGTTCTGA

Coding sequence (CDS)

ATGGTGAAAGAGTTTCTTGATGTATTTCCAGATGATCTGTCAGGTTTGCCACCTTATAAAGAGATTGAGTTCACTACTGAATTGTTACTAGGAACAACACCTATTTCACAGGCACCGTATAAAATGGCTCCGAGCGAGCTTAAAGAATTGGAGGTGCAATTACAAGAACTGGTTGACAAGGGATACATCAGGCCTAGTGTATCGCCTTGGGGAGCACCAATGCTATTTGTGAAAAGCATAGATGGTACTCTTAGATTATGTATTGATTATAGACAGTTAAACAAGGTTACAATATGTAACAAGTATCCTTTACCACACATCGATGACTTATTTGATCAGCTAAGAGGAACAACATTGTTCTCTAAGATTGACTTAAGATCAGGATACCACCAGTTGAAGGTTAAAGAATCAGATATTCCTAAGACAACATTCAGAACGAGGTATGGGCACTATGAGTTCTGA

Protein sequence

MVKEFLDVFPDDLSGLPPYKEIEFTTELLLGTTPISQAPYKMAPSELKELEVQLQELVDKGYIRPSVSPWGAPMLFVKSIDGTLRLCIDYRQLNKVTICNKYPLPHIDDLFDQLRGTTLFSKIDLRSGYHQLKVKESDIPKTTFRTRYGHYEF
Homology
[Close]
BLAST of Cmc08g0232211 vs. NCBI nr
Match: TYK29281.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 289.3 bits (739), Expect = 2.0e-74
Identity = 139/142 (97.89%), Postives = 139/142 (97.89%), Query Frame = 0 

Query: 11  DDLSGLPPYKEIEFTTELLLGTTPISQAPYKMAPSELKELEVQLQELVDKGYIRPSVSPW 70
           DDLSGLPPYKEIEFTTELLLGTTPISQAPYKMAPSELKELEVQLQELVDKGYIRPSVSPW
Sbjct: 557 DDLSGLPPYKEIEFTTELLLGTTPISQAPYKMAPSELKELEVQLQELVDKGYIRPSVSPW 616

Query: 71  GAPMLFVKSIDGTLRLCIDYRQLNKVTICNKYPLPHIDDLFDQLRGTTLFSKIDLRSGYH 130
           GAPMLFVKSIDGTLRLCIDYRQLNKVTICNKYPLPHIDDLFDQLRGTTLFSKIDLRSGYH
Sbjct: 617 GAPMLFVKSIDGTLRLCIDYRQLNKVTICNKYPLPHIDDLFDQLRGTTLFSKIDLRSGYH 676

Query: 131 QLKVKESDIPKTTFRTRYGHYE 153
           QLKVKESDIPKTTFRTR  H E
Sbjct: 677 QLKVKESDIPKTTFRTRESHEE 698

[Close]
BLAST of Cmc08g0232211 vs. NCBI nr
Match: KAA0062255.1 (putative Retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 282.0 bits (720), Expect = 3.2e-72
Identity = 134/153 (87.58%), Postives = 143/153 (93.46%), Query Frame = 0 

Query: 1   MVKEFLDVFPDDLSGLPPYKEIEFTTELLLGTTPISQAPYKMAPSELKELEVQLQELVDK 60
           +VKEF+DVFPDDLSGLPP +EIEFT ELL GTTPISQAPY+M+PSELK+L++QLQELVDK
Sbjct: 536 VVKEFVDVFPDDLSGLPPDREIEFTIELLPGTTPISQAPYRMSPSELKDLKMQLQELVDK 595

Query: 61  GYIRPSVSPWGAPMLFVKSIDGTLRLCIDYRQLNKVTICNKYPLPHIDDLFDQLRGTTLF 120
           GYIRPSVSPWGAPMLFVK  DGTLRLCIDYRQLNKVTI NKYPLP IDDLFDQLRG TLF
Sbjct: 596 GYIRPSVSPWGAPMLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGATLF 655

Query: 121 SKIDLRSGYHQLKVKESDIPKTTFRTRYGHYEF 154
           SKIDLRSGYHQLKV+ESDI KT FRTRYGHYEF
Sbjct: 656 SKIDLRSGYHQLKVRESDIAKTAFRTRYGHYEF 688

[Close]
BLAST of Cmc08g0232211 vs. NCBI nr
Match: KAA0050527.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 282.0 bits (720), Expect = 3.2e-72
Identity = 135/153 (88.24%), Postives = 142/153 (92.81%), Query Frame = 0 

Query: 1   MVKEFLDVFPDDLSGLPPYKEIEFTTELLLGTTPISQAPYKMAPSELKELEVQLQELVDK 60
           +VKEFLDVFPDDLSGLPP +EIEFT ELL GT PISQAPY+MAPSELKEL++QLQELVDK
Sbjct: 285 VVKEFLDVFPDDLSGLPPDREIEFTIELLPGTAPISQAPYRMAPSELKELKMQLQELVDK 344

Query: 61  GYIRPSVSPWGAPMLFVKSIDGTLRLCIDYRQLNKVTICNKYPLPHIDDLFDQLRGTTLF 120
           GYIRPSVSPWGAP+LFVK  DGTLRLCIDYRQLNKVTI NKYPLP IDDLFDQLRG TLF
Sbjct: 345 GYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGATLF 404

Query: 121 SKIDLRSGYHQLKVKESDIPKTTFRTRYGHYEF 154
           SKIDLRSGYHQLKV+ESDI KT FRTRYGHYEF
Sbjct: 405 SKIDLRSGYHQLKVRESDIAKTAFRTRYGHYEF 437

[Close]
BLAST of Cmc08g0232211 vs. NCBI nr
Match: KAA0066849.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 282.0 bits (720), Expect = 3.2e-72
Identity = 135/153 (88.24%), Postives = 142/153 (92.81%), Query Frame = 0 

Query: 1   MVKEFLDVFPDDLSGLPPYKEIEFTTELLLGTTPISQAPYKMAPSELKELEVQLQELVDK 60
           +VKEFLDVFPDDLSGLPP +EIEFT ELL GT PISQAPY+MAPSELKEL++QLQELVDK
Sbjct: 624 VVKEFLDVFPDDLSGLPPDREIEFTIELLPGTAPISQAPYRMAPSELKELKMQLQELVDK 683

Query: 61  GYIRPSVSPWGAPMLFVKSIDGTLRLCIDYRQLNKVTICNKYPLPHIDDLFDQLRGTTLF 120
           GYIRPSVSPWGAP+LFVK  DGTLRLCIDYRQLNKVTI NKYPLP IDDLFDQLRG TLF
Sbjct: 684 GYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGATLF 743

Query: 121 SKIDLRSGYHQLKVKESDIPKTTFRTRYGHYEF 154
           SKIDLRSGYHQLKV+ESDI KT FRTRYGHYEF
Sbjct: 744 SKIDLRSGYHQLKVRESDIAKTAFRTRYGHYEF 776

[Close]
BLAST of Cmc08g0232211 vs. NCBI nr
Match: KAA0062270.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 282.0 bits (720), Expect = 3.2e-72
Identity = 135/153 (88.24%), Postives = 142/153 (92.81%), Query Frame = 0 

Query: 1   MVKEFLDVFPDDLSGLPPYKEIEFTTELLLGTTPISQAPYKMAPSELKELEVQLQELVDK 60
           +VKEFLDVFPDDLSGLPP +EIEFT ELL GT PISQAPY+MAPSELKEL++QLQELVDK
Sbjct: 522 VVKEFLDVFPDDLSGLPPDREIEFTIELLPGTAPISQAPYRMAPSELKELKMQLQELVDK 581

Query: 61  GYIRPSVSPWGAPMLFVKSIDGTLRLCIDYRQLNKVTICNKYPLPHIDDLFDQLRGTTLF 120
           GYIRPSVSPWGAP+LFVK  DGTLRLCIDYRQLNKVTI NKYPLP IDDLFDQLRG TLF
Sbjct: 582 GYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGATLF 641

Query: 121 SKIDLRSGYHQLKVKESDIPKTTFRTRYGHYEF 154
           SKIDLRSGYHQLKV+ESDI KT FRTRYGHYEF
Sbjct: 642 SKIDLRSGYHQLKVRESDIAKTAFRTRYGHYEF 674

[Close]
BLAST of Cmc08g0232211 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 113.2 bits (282), Expect = 2.6e-24
Identity = 56/153 (36.60%), Postives = 86/153 (56.21%), Query Frame = 0 

Query: 1   MVKEFLDVFPDDLSGLPPYKEIEFTTELLLGTTPISQAPYKMAPSELKELEVQLQELVDK 60
           +++  L   P D++ +P   +IE       G       PY +     +E+   +Q+L+D 
Sbjct: 567 IIRNDLPPRPADINNIPVKHDIEIKP----GARLPRLQPYHVTEKNEQEINKIVQKLLDN 626

Query: 61  GYIRPSVSPWGAPMLFVKSIDGTLRLCIDYRQLNKVTICNKYPLPHIDDLFDQLRGTTLF 120
            +I PS SP  +P++ V   DGT RLC+DYR LNK TI + +PLP ID+L  ++    +F
Sbjct: 627 KFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIF 686

Query: 121 SKIDLRSGYHQLKVKESDIPKTTFRTRYGHYEF 154
           + +DL SGYHQ+ ++  D  KT F T  G YE+
Sbjct: 687 TTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEY 715

[Close]
BLAST of Cmc08g0232211 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 113.2 bits (282), Expect = 2.6e-24
Identity = 56/153 (36.60%), Postives = 86/153 (56.21%), Query Frame = 0 

Query: 1   MVKEFLDVFPDDLSGLPPYKEIEFTTELLLGTTPISQAPYKMAPSELKELEVQLQELVDK 60
           +++  L   P D++ +P   +IE       G       PY +     +E+   +Q+L+D 
Sbjct: 593 IIRNDLPPRPADINNIPVKHDIEIKP----GARLPRLQPYHVTEKNEQEINKIVQKLLDN 652

Query: 61  GYIRPSVSPWGAPMLFVKSIDGTLRLCIDYRQLNKVTICNKYPLPHIDDLFDQLRGTTLF 120
            +I PS SP  +P++ V   DGT RLC+DYR LNK TI + +PLP ID+L  ++    +F
Sbjct: 653 KFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIF 712

Query: 121 SKIDLRSGYHQLKVKESDIPKTTFRTRYGHYEF 154
           + +DL SGYHQ+ ++  D  KT F T  G YE+
Sbjct: 713 TTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEY 741

[Close]
BLAST of Cmc08g0232211 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.5e-21
Identity = 58/148 (39.19%), Postives = 91/148 (61.49%), Query Frame = 0 

Query: 19  YKE---IEFTTEL--LLGTT---PISQAPYKMAPSELKELEVQLQELVDKGYIRPSVSPW 78
           YKE   + FT  +  +L TT   PI    Y +A +   E+E Q+QE++++G IR S SP+
Sbjct: 183 YKEGEKLTFTNTIKHVLNTTHNSPIYSKQYPLAQTHEIEVENQVQEMLNQGLIRESNSPY 242

Query: 79  GAPMLFV-KSIDGT----LRLCIDYRQLNKVTICNKYPLPHIDDLFDQLRGTTLFSKIDL 138
            +P   V K  D +     R+ IDYR+LN++TI ++YP+P++D++  +L     F+ IDL
Sbjct: 243 NSPTWVVPKKPDASGANKYRVVIDYRKLNEITIPDRYPIPNMDEILGKLGKCQYFTTIDL 302

Query: 139 RSGYHQLKVKESDIPKTTFRTRYGHYEF 154
             G+HQ+++ E  I KT F T+ GHYE+
Sbjct: 303 AKGFHQIEMDEESISKTAFSTKSGHYEY 330

[Close]
BLAST of Cmc08g0232211 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 2.6e-21
Identity = 53/153 (34.64%), Postives = 89/153 (58.17%), Query Frame = 0 

Query: 3   KEFLDVFPD-DLSGLP-PYKEIEFTTELLLGTTPISQAPYKMAPSELKELEVQLQELVDK 62
           KEF D+  + +   LP P K +EF  EL      +    Y + P +++ +  ++ + +  
Sbjct: 379 KEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIRNYPLPPGKMQAMNDEINQGLKS 438

Query: 63  GYIRPSVSPWGAPMLFVKSIDGTLRLCIDYRQLNKVTICNKYPLPHIDDLFDQLRGTTLF 122
           G IR S +    P++FV   +GTLR+ +DY+ LNK    N YPLP I+ L  +++G+T+F
Sbjct: 439 GIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIF 498

Query: 123 SKIDLRSGYHQLKVKESDIPKTTFRTRYGHYEF 154
           +K+DL+S YH ++V++ D  K  FR   G +E+
Sbjct: 499 TKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEY 531

[Close]
BLAST of Cmc08g0232211 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 2.6e-21
Identity = 53/153 (34.64%), Postives = 89/153 (58.17%), Query Frame = 0 

Query: 3   KEFLDVFPD-DLSGLP-PYKEIEFTTELLLGTTPISQAPYKMAPSELKELEVQLQELVDK 62
           KEF D+  + +   LP P K +EF  EL      +    Y + P +++ +  ++ + +  
Sbjct: 379 KEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIRNYPLPPGKMQAMNDEINQGLKS 438

Query: 63  GYIRPSVSPWGAPMLFVKSIDGTLRLCIDYRQLNKVTICNKYPLPHIDDLFDQLRGTTLF 122
           G IR S +    P++FV   +GTLR+ +DY+ LNK    N YPLP I+ L  +++G+T+F
Sbjct: 439 GIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIF 498

Query: 123 SKIDLRSGYHQLKVKESDIPKTTFRTRYGHYEF 154
           +K+DL+S YH ++V++ D  K  FR   G +E+
Sbjct: 499 TKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEY 531

[Close]
BLAST of Cmc08g0232211 vs. ExPASy TrEMBL
Match: A0A5D3E0X2 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1212G00480 PE=4 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 9.6e-75
Identity = 139/142 (97.89%), Postives = 139/142 (97.89%), Query Frame = 0 

Query: 11  DDLSGLPPYKEIEFTTELLLGTTPISQAPYKMAPSELKELEVQLQELVDKGYIRPSVSPW 70
           DDLSGLPPYKEIEFTTELLLGTTPISQAPYKMAPSELKELEVQLQELVDKGYIRPSVSPW
Sbjct: 557 DDLSGLPPYKEIEFTTELLLGTTPISQAPYKMAPSELKELEVQLQELVDKGYIRPSVSPW 616

Query: 71  GAPMLFVKSIDGTLRLCIDYRQLNKVTICNKYPLPHIDDLFDQLRGTTLFSKIDLRSGYH 130
           GAPMLFVKSIDGTLRLCIDYRQLNKVTICNKYPLPHIDDLFDQLRGTTLFSKIDLRSGYH
Sbjct: 617 GAPMLFVKSIDGTLRLCIDYRQLNKVTICNKYPLPHIDDLFDQLRGTTLFSKIDLRSGYH 676

Query: 131 QLKVKESDIPKTTFRTRYGHYE 153
           QLKVKESDIPKTTFRTR  H E
Sbjct: 677 QLKVKESDIPKTTFRTRESHEE 698

[Close]
BLAST of Cmc08g0232211 vs. ExPASy TrEMBL
Match: A0A5A7V8M7 (Putative Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold679G00210 PE=4 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 1.5e-72
Identity = 134/153 (87.58%), Postives = 143/153 (93.46%), Query Frame = 0 

Query: 1   MVKEFLDVFPDDLSGLPPYKEIEFTTELLLGTTPISQAPYKMAPSELKELEVQLQELVDK 60
           +VKEF+DVFPDDLSGLPP +EIEFT ELL GTTPISQAPY+M+PSELK+L++QLQELVDK
Sbjct: 536 VVKEFVDVFPDDLSGLPPDREIEFTIELLPGTTPISQAPYRMSPSELKDLKMQLQELVDK 595

Query: 61  GYIRPSVSPWGAPMLFVKSIDGTLRLCIDYRQLNKVTICNKYPLPHIDDLFDQLRGTTLF 120
           GYIRPSVSPWGAPMLFVK  DGTLRLCIDYRQLNKVTI NKYPLP IDDLFDQLRG TLF
Sbjct: 596 GYIRPSVSPWGAPMLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGATLF 655

Query: 121 SKIDLRSGYHQLKVKESDIPKTTFRTRYGHYEF 154
           SKIDLRSGYHQLKV+ESDI KT FRTRYGHYEF
Sbjct: 656 SKIDLRSGYHQLKVRESDIAKTAFRTRYGHYEF 688

[Close]
BLAST of Cmc08g0232211 vs. ExPASy TrEMBL
Match: A0A5A7SPH3 (Putative Gag-pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G003020 PE=4 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 1.5e-72
Identity = 135/153 (88.24%), Postives = 142/153 (92.81%), Query Frame = 0 

Query: 1   MVKEFLDVFPDDLSGLPPYKEIEFTTELLLGTTPISQAPYKMAPSELKELEVQLQELVDK 60
           +VKEFLDVFPDDLSGLPP +EIEFT ELL GT PISQAPY+MAPSELKEL++QLQELVDK
Sbjct: 586 VVKEFLDVFPDDLSGLPPDREIEFTIELLPGTAPISQAPYRMAPSELKELKMQLQELVDK 645

Query: 61  GYIRPSVSPWGAPMLFVKSIDGTLRLCIDYRQLNKVTICNKYPLPHIDDLFDQLRGTTLF 120
           GYIRPSVSPWGAP+LFVK  DGTLRLCIDYRQLNKVTI NKYPLP IDDLFDQLRG  LF
Sbjct: 646 GYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALF 705

Query: 121 SKIDLRSGYHQLKVKESDIPKTTFRTRYGHYEF 154
           SKIDLRSGYHQLKV+ESDI KTTFRTRYGHYEF
Sbjct: 706 SKIDLRSGYHQLKVRESDIAKTTFRTRYGHYEF 738

[Close]
BLAST of Cmc08g0232211 vs. ExPASy TrEMBL
Match: A0A5A7T3K4 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold510G00170 PE=4 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 1.5e-72
Identity = 135/153 (88.24%), Postives = 142/153 (92.81%), Query Frame = 0 

Query: 1   MVKEFLDVFPDDLSGLPPYKEIEFTTELLLGTTPISQAPYKMAPSELKELEVQLQELVDK 60
           +VKEFLDVFPDDLSGLPP +EIEFT ELL GT PISQAPY+MAPSELKEL++QLQELVDK
Sbjct: 225 VVKEFLDVFPDDLSGLPPDREIEFTIELLPGTAPISQAPYRMAPSELKELKMQLQELVDK 284

Query: 61  GYIRPSVSPWGAPMLFVKSIDGTLRLCIDYRQLNKVTICNKYPLPHIDDLFDQLRGTTLF 120
           GYIRPSVSPWGAP+LFVK  DGTLRLCIDYRQLNKVTI NKYPLP IDDLFDQLRG TLF
Sbjct: 285 GYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGATLF 344

Query: 121 SKIDLRSGYHQLKVKESDIPKTTFRTRYGHYEF 154
           SKIDLRSGYHQLKV+ESDI KT FRTRYGHYEF
Sbjct: 345 SKIDLRSGYHQLKVRESDIAKTAFRTRYGHYEF 377

[Close]
BLAST of Cmc08g0232211 vs. ExPASy TrEMBL
Match: A0A5A7U819 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold175G001730 PE=4 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 1.5e-72
Identity = 135/153 (88.24%), Postives = 142/153 (92.81%), Query Frame = 0 

Query: 1   MVKEFLDVFPDDLSGLPPYKEIEFTTELLLGTTPISQAPYKMAPSELKELEVQLQELVDK 60
           +VKEFLDVFPDDLSGLPP +EIEFT ELL GT PISQAPY+MAPSELKEL++QLQELVDK
Sbjct: 285 VVKEFLDVFPDDLSGLPPDREIEFTIELLPGTAPISQAPYRMAPSELKELKMQLQELVDK 344

Query: 61  GYIRPSVSPWGAPMLFVKSIDGTLRLCIDYRQLNKVTICNKYPLPHIDDLFDQLRGTTLF 120
           GYIRPSVSPWGAP+LFVK  DGTLRLCIDYRQLNKVTI NKYPLP IDDLFDQLRG TLF
Sbjct: 345 GYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGATLF 404

Query: 121 SKIDLRSGYHQLKVKESDIPKTTFRTRYGHYEF 154
           SKIDLRSGYHQLKV+ESDI KT FRTRYGHYEF
Sbjct: 405 SKIDLRSGYHQLKVRESDIAKTAFRTRYGHYEF 437

The following BLAST results are available for this feature:
BLAST of Cmc08g0232211 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK29281.12.0e-7497.89DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
KAA0062255.13.2e-7287.58putative Retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0050527.13.2e-7288.24DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
KAA0066849.13.2e-7288.24DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
KAA0062270.13.2e-7288.24DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
BLAST of Cmc08g0232211 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q993152.6e-2436.60Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20... [more]
Q7LHG52.6e-2436.60Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20... [more]
P208251.5e-2139.19Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste... [more]
Q9UR072.6e-2134.64Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24... [more]
P0CT412.6e-2134.64Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24... [more]
BLAST of Cmc08g0232211 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3E0X29.6e-7597.89DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5A7V8M71.5e-7287.58Putative Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27... [more]
A0A5A7SPH31.5e-7288.24Putative Gag-pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol... [more]
A0A5A7T3K41.5e-7288.24Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold51... [more]
A0A5A7U8191.5e-7288.24Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17... [more]
BLAST of Cmc08g0232211 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.10.10.10HIV Type 1 Reverse Transcriptase, subunit A, domain 1coord: 23..153
e-value: 2.3E-49
score: 169.6
NoneNo IPR availablePANTHERPTHR24559:SF382SUBFAMILY NOT NAMEDcoord: 3..113
NoneNo IPR availablePANTHERPTHR24559TRANSPOSON TY3-I GAG-POL POLYPROTEINcoord: 3..113
NoneNo IPR availableCDDcd01647RT_LTRcoord: 61..153
e-value: 2.50987E-46
score: 146.972
IPR043128Reverse transcriptase/Diguanylate cyclase domainGENE3D3.30.70.270coord: 102..129
e-value: 2.3E-49
score: 169.6
IPR043502DNA/RNA polymerase superfamilySUPERFAMILY56672DNA/RNA polymerasescoord: 2..153

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc08g0232211.1Cmc08g0232211.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0006278 RNA-dependent DNA biosynthetic process
cellular_component GO:0000786 nucleosome
molecular_function GO:0003677 DNA binding
molecular_function GO:0046982 protein heterodimerization activity
molecular_function GO:0003964 RNA-directed DNA polymerase activity
molecular_function GO:0030527 structural constituent of chromatin
molecular_function GO:0008270 zinc ion binding