Cmc08g0231381 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0231381
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase Ty1/copia-type domain-containing protein
Location	CMiso1.1chr08: 27717241 .. 27718032 (+)
RNA-Seq Expression	Cmc08g0231381
Synteny	Cmc08g0231381

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACACGACTAGTGGTAAAAATGTAGAAGAGACTCAAGTATATGAAGATAACAATGAGATCTCGATAAATTATACCATGACAGGAAAAAGGTGGAATAGAATTAATGTAGTTGTGGACAATATTTTTGCGTATAATGTTGCACATAATATCATTCATGAAAATGAGGATTATGAACCTAAATCTGTTGACGAATGTCGTAATAGAAAGGATTGGCCCAAGTGGAAAGAAGTCATCCAAGCAGAACTGAACTCACTCACGAAACATGAATTTTTTGGACCTGTAGTTTATACACATAAAGGTGTAAAACCTGTGGGATTTAAATGGGTATTTGTGCATAAACGAAATAAAAATAATGAGGTCACTAGATATAAAGCACGACTTGTTGCACAAGGATTTTCTCAAAGACTAGACATTGATTATGAGGAAACATATTCTCCTGTGGTGGATGCTATTACATTAAGATATTTAATTAGTCTGACTGTATGTGAAAATCTTGATATGCATCTTATGGATGTAGTTACAACATACTTGTATGGATCTTTGGAAAATGAAATCTATATGAAAATCCCTAAAGGATTTAAGATACTTGAATCATATAATTCAAGCTCTAGAGAATTATGTTCAATCAAATTACAAAGATCATTATATGGATTGAAACAATCAGGACGAATGTTGTATAATCGCTTAAGTGAATATTTATGGAAAGAAGGTTATCAAAATAATCCAATTTGTCCATGTGTTTTTATTAAGAAATCACAGTCAGGATTTGCGATTATAGGTATATGTTGA

mRNA sequence

ATGGACACGACTAGTGGTAAAAATGTAGAAGAGACTCAAGTATATGAAGATAACAATGAGATCTCGATAAATTATACCATGACAGGAAAAAGGTGGAATAGAATTAATGTAGTTGTGGACAATATTTTTGCGTATAATGTTGCACATAATATCATTCATGAAAATGAGGATTATGAACCTAAATCTGTTGACGAATGTCGTAATAGAAAGGATTGGCCCAAGTGGAAAGAAGTCATCCAAGCAGAACTGAACTCACTCACGAAACATGAATTTTTTGGACCTGTAGTTTATACACATAAAGGTGTAAAACCTGTGGGATTTAAATGGGTATTTGTGCATAAACGAAATAAAAATAATGAGGTCACTAGATATAAAGCACGACTTGTTGCACAAGGATTTTCTCAAAGACTAGACATTGATTATGAGGAAACATATTCTCCTGTGGTGGATGCTATTACATTAAGATATTTAATTAGTCTGACTGTATGTGAAAATCTTGATATGCATCTTATGGATGTAGTTACAACATACTTGTATGGATCTTTGGAAAATGAAATCTATATGAAAATCCCTAAAGGATTTAAGATACTTGAATCATATAATTCAAGCTCTAGAGAATTATGTTCAATCAAATTACAAAGATCATTATATGGATTGAAACAATCAGGACGAATGTTGTATAATCGCTTAAGTGAATATTTATGGAAAGAAGGTTATCAAAATAATCCAATTTGTCCATGTGTTTTTATTAAGAAATCACAGTCAGGATTTGCGATTATAGGTATATGTTGA

Coding sequence (CDS)

ATGGACACGACTAGTGGTAAAAATGTAGAAGAGACTCAAGTATATGAAGATAACAATGAGATCTCGATAAATTATACCATGACAGGAAAAAGGTGGAATAGAATTAATGTAGTTGTGGACAATATTTTTGCGTATAATGTTGCACATAATATCATTCATGAAAATGAGGATTATGAACCTAAATCTGTTGACGAATGTCGTAATAGAAAGGATTGGCCCAAGTGGAAAGAAGTCATCCAAGCAGAACTGAACTCACTCACGAAACATGAATTTTTTGGACCTGTAGTTTATACACATAAAGGTGTAAAACCTGTGGGATTTAAATGGGTATTTGTGCATAAACGAAATAAAAATAATGAGGTCACTAGATATAAAGCACGACTTGTTGCACAAGGATTTTCTCAAAGACTAGACATTGATTATGAGGAAACATATTCTCCTGTGGTGGATGCTATTACATTAAGATATTTAATTAGTCTGACTGTATGTGAAAATCTTGATATGCATCTTATGGATGTAGTTACAACATACTTGTATGGATCTTTGGAAAATGAAATCTATATGAAAATCCCTAAAGGATTTAAGATACTTGAATCATATAATTCAAGCTCTAGAGAATTATGTTCAATCAAATTACAAAGATCATTATATGGATTGAAACAATCAGGACGAATGTTGTATAATCGCTTAAGTGAATATTTATGGAAAGAAGGTTATCAAAATAATCCAATTTGTCCATGTGTTTTTATTAAGAAATCACAGTCAGGATTTGCGATTATAGGTATATGTTGA

Protein sequence

MDTTSGKNVEETQVYEDNNEISINYTMTGKRWNRINVVVDNIFAYNVAHNIIHENEDYEPKSVDECRNRKDWPKWKEVIQAELNSLTKHEFFGPVVYTHKGVKPVGFKWVFVHKRNKNNEVTRYKARLVAQGFSQRLDIDYEETYSPVVDAITLRYLISLTVCENLDMHLMDVVTTYLYGSLENEIYMKIPKGFKILESYNSSSRELCSIKLQRSLYGLKQSGRMLYNRLSEYLWKEGYQNNPICPCVFIKKSQSGFAIIGIC

Homology

[Close]

BLAST of Cmc08g0231381 vs. NCBI nr
Match: RVW26456.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 370.2 bits (949), Expect = 1.5e-98
Identity = 179/253 (70.75%), Postives = 214/253 (84.58%), Query Frame = 0


Query: 10  EETQVYEDNNEISINYTMTGKRWNRINVVVDNIFAYNVAHNIIHENEDYEPKSVDECRNR 69
           EE QV E N EIS++Y  TG++W+R N+V++NIFA+ VA +II  +ED EP++V+ECR+R
Sbjct: 308 EEAQVPE-NCEISVSYVQTGEKWDRNNIVINNIFAFQVASDIIRNDEDPEPRNVEECRHR 367

Query: 70  KDWPKWKEVIQAELNSLTKHEFFGPVVYTHKGVKPVGFKWVFVHKRNKNNEVTRYKARLV 129
            DWPKWKE IQAELNSLTK E FGPVV T + VKPVG+KWVFV KRN+NNE+ RYKARLV
Sbjct: 368 NDWPKWKEAIQAELNSLTKREVFGPVVQTPEDVKPVGYKWVFVRKRNENNEIIRYKARLV 427

Query: 130 AQGFSQRLDIDYEETYSPVVDAITLRYLISLTVCENLDMHLMDVVTTYLYGSLENEIYMK 189
           AQGFSQR  IDYEETYSPV+DAIT R+LISL V E LDM LMDV+T YLYGS++N+IYMK
Sbjct: 428 AQGFSQRPGIDYEETYSPVMDAITFRFLISLAVSEGLDMRLMDVITAYLYGSMDNDIYMK 487

Query: 190 IPKGFKILESYNSSSRELCSIKLQRSLYGLKQSGRMLYNRLSEYLWKEGYQNNPICPCVF 249
           IP+GFK+ ++ N+  R + SIKLQRSLYGLKQSGRM YNRLSEYL KEGY NNPICPC+F
Sbjct: 488 IPEGFKLPDANNTKPRSMYSIKLQRSLYGLKQSGRMWYNRLSEYLLKEGYVNNPICPCIF 547

Query: 250 IKKSQSGFAIIGI 263
           IKKS++GFAII +
Sbjct: 548 IKKSETGFAIIAV 559

[Close]

BLAST of Cmc08g0231381 vs. NCBI nr
Match: RVW94544.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 370.2 bits (949), Expect = 1.5e-98
Identity = 178/253 (70.36%), Postives = 214/253 (84.58%), Query Frame = 0


Query: 10  EETQVYEDNNEISINYTMTGKRWNRINVVVDNIFAYNVAHNIIHENEDYEPKSVDECRNR 69
           EE QV E N EIS++Y  TG++W+R N+V++NIFA+ VA +II  +ED EP++V+ECR+R
Sbjct: 747 EEAQVPE-NCEISVSYVQTGEKWDRNNIVINNIFAFQVAFDIIRNDEDPEPRNVEECRHR 806

Query: 70  KDWPKWKEVIQAELNSLTKHEFFGPVVYTHKGVKPVGFKWVFVHKRNKNNEVTRYKARLV 129
            DWPKWKE IQAELNSLTK E FGPVV T + VKPVG+KWVFV KRN+NNE+ RYKARLV
Sbjct: 807 NDWPKWKEAIQAELNSLTKREVFGPVVQTPEDVKPVGYKWVFVRKRNENNEIIRYKARLV 866

Query: 130 AQGFSQRLDIDYEETYSPVVDAITLRYLISLTVCENLDMHLMDVVTTYLYGSLENEIYMK 189
           AQGFSQR  +DYEETYSPV+DAIT R+LIS  V E LDM LMDV+TTYLYGS++N+IYMK
Sbjct: 867 AQGFSQRPGVDYEETYSPVMDAITFRFLISFAVSEGLDMRLMDVITTYLYGSMDNDIYMK 926

Query: 190 IPKGFKILESYNSSSRELCSIKLQRSLYGLKQSGRMLYNRLSEYLWKEGYQNNPICPCVF 249
           IP+GFK+ ++ N+  R + SIKLQRSLYGLKQSGRM YNRLSEYL KEGY NNPICPC+F
Sbjct: 927 IPEGFKLPDANNTKPRSMYSIKLQRSLYGLKQSGRMWYNRLSEYLLKEGYVNNPICPCIF 986

Query: 250 IKKSQSGFAIIGI 263
           IKKS++GFAII +
Sbjct: 987 IKKSETGFAIIAV 998

[Close]

BLAST of Cmc08g0231381 vs. NCBI nr
Match: RVW89885.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 370.2 bits (949), Expect = 1.5e-98
Identity = 179/253 (70.75%), Postives = 214/253 (84.58%), Query Frame = 0


Query: 10  EETQVYEDNNEISINYTMTGKRWNRINVVVDNIFAYNVAHNIIHENEDYEPKSVDECRNR 69
           EE QV E N EIS++Y  TG++W+R N+V++NIFA+ VA +II  +ED EP++V+ECR+R
Sbjct: 582 EEAQVPE-NCEISVSYVQTGEKWDRNNIVINNIFAFQVASDIIRNDEDPEPRNVEECRHR 641

Query: 70  KDWPKWKEVIQAELNSLTKHEFFGPVVYTHKGVKPVGFKWVFVHKRNKNNEVTRYKARLV 129
            DWPKWKE IQAELNSLTK E FGPVV T + VKPVG+KWVFV KRN+NNE+ RYKARLV
Sbjct: 642 NDWPKWKEAIQAELNSLTKREVFGPVVQTPEDVKPVGYKWVFVRKRNENNEIIRYKARLV 701

Query: 130 AQGFSQRLDIDYEETYSPVVDAITLRYLISLTVCENLDMHLMDVVTTYLYGSLENEIYMK 189
           AQGFSQR  IDYEETYSPV+DAIT R+LISL V E LDM LMDV+T YLYGS++N+IYMK
Sbjct: 702 AQGFSQRPGIDYEETYSPVMDAITFRFLISLAVSEGLDMRLMDVITAYLYGSMDNDIYMK 761

Query: 190 IPKGFKILESYNSSSRELCSIKLQRSLYGLKQSGRMLYNRLSEYLWKEGYQNNPICPCVF 249
           IP+GFK+ ++ N+  R + SIKLQRSLYGLKQSGRM YNRLSEYL KEGY NNPICPC+F
Sbjct: 762 IPEGFKLPDANNTKPRSMYSIKLQRSLYGLKQSGRMWYNRLSEYLLKEGYVNNPICPCIF 821

Query: 250 IKKSQSGFAIIGI 263
           IKKS++GFAII +
Sbjct: 822 IKKSETGFAIIAV 833

[Close]

BLAST of Cmc08g0231381 vs. NCBI nr
Match: RVW59049.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 370.2 bits (949), Expect = 1.5e-98
Identity = 179/253 (70.75%), Postives = 214/253 (84.58%), Query Frame = 0


Query: 10  EETQVYEDNNEISINYTMTGKRWNRINVVVDNIFAYNVAHNIIHENEDYEPKSVDECRNR 69
           EE QV E N EIS++Y  TG++W+R N+V++NIFA+ VA +II  +ED EP++V+ECR+R
Sbjct: 488 EEAQVPE-NCEISVSYVQTGEKWDRNNIVINNIFAFQVASDIIRNDEDPEPRNVEECRHR 547

Query: 70  KDWPKWKEVIQAELNSLTKHEFFGPVVYTHKGVKPVGFKWVFVHKRNKNNEVTRYKARLV 129
            DWPKWKE IQAELNSLTK E FGPVV T + VKPVG+KWVFV KRN+NNE+ RYKARLV
Sbjct: 548 NDWPKWKEAIQAELNSLTKREVFGPVVQTPEDVKPVGYKWVFVRKRNENNEIIRYKARLV 607

Query: 130 AQGFSQRLDIDYEETYSPVVDAITLRYLISLTVCENLDMHLMDVVTTYLYGSLENEIYMK 189
           AQGFSQR  IDYEETYSPV+DAIT R+LISL V E LDM LMDV+T YLYGS++N+IYMK
Sbjct: 608 AQGFSQRPGIDYEETYSPVMDAITFRFLISLAVSEGLDMRLMDVITAYLYGSMDNDIYMK 667

Query: 190 IPKGFKILESYNSSSRELCSIKLQRSLYGLKQSGRMLYNRLSEYLWKEGYQNNPICPCVF 249
           IP+GFK+ ++ N+  R + SIKLQRSLYGLKQSGRM YNRLSEYL KEGY NNPICPC+F
Sbjct: 668 IPEGFKLPDANNTKPRSMYSIKLQRSLYGLKQSGRMWYNRLSEYLLKEGYVNNPICPCIF 727

Query: 250 IKKSQSGFAIIGI 263
           IKKS++GFAII +
Sbjct: 728 IKKSETGFAIIAV 739

[Close]

BLAST of Cmc08g0231381 vs. NCBI nr
Match: RVW50867.1 (Copia protein [Vitis vinifera])

HSP 1 Score: 370.2 bits (949), Expect = 1.5e-98
Identity = 179/253 (70.75%), Postives = 214/253 (84.58%), Query Frame = 0


Query: 10  EETQVYEDNNEISINYTMTGKRWNRINVVVDNIFAYNVAHNIIHENEDYEPKSVDECRNR 69
           EE QV E N EIS++Y  TG++W+R N+V++NIFA+ VA +II  +ED EP++V+ECR+R
Sbjct: 501 EEAQVPE-NCEISVSYVQTGEKWDRNNIVINNIFAFQVASDIIRNDEDPEPRNVEECRHR 560

Query: 70  KDWPKWKEVIQAELNSLTKHEFFGPVVYTHKGVKPVGFKWVFVHKRNKNNEVTRYKARLV 129
            DWPKWKE IQAELNSLTK E FGPVV T + VKPVG+KWVFV KRN+NNE+ RYKARLV
Sbjct: 561 NDWPKWKEAIQAELNSLTKREVFGPVVQTPEDVKPVGYKWVFVRKRNENNEIIRYKARLV 620

Query: 130 AQGFSQRLDIDYEETYSPVVDAITLRYLISLTVCENLDMHLMDVVTTYLYGSLENEIYMK 189
           AQGFSQR  IDYEETYSPV+DAIT R+LISL V E LDM LMDV+T YLYGS++N+IYMK
Sbjct: 621 AQGFSQRPGIDYEETYSPVMDAITFRFLISLAVSEGLDMRLMDVITAYLYGSMDNDIYMK 680

Query: 190 IPKGFKILESYNSSSRELCSIKLQRSLYGLKQSGRMLYNRLSEYLWKEGYQNNPICPCVF 249
           IP+GFK+ ++ N+  R + SIKLQRSLYGLKQSGRM YNRLSEYL KEGY NNPICPC+F
Sbjct: 681 IPEGFKLPDANNTKPRSMYSIKLQRSLYGLKQSGRMWYNRLSEYLLKEGYVNNPICPCIF 740

Query: 250 IKKSQSGFAIIGI 263
           IKKS++GFAII +
Sbjct: 741 IKKSETGFAIIAV 752

[Close]

BLAST of Cmc08g0231381 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 7.0e-30
Identity = 73/207 (35.27%), Postives = 126/207 (60.87%), Query Frame = 0


Query: 55   NEDYEPKSVDECRNRKDWPKWKEVIQAELNSLTKHEFFGPVVYTHKGVKPVGFKWVFVHK 114
            ++D EP+S+ E  +  +  +  + +Q E+ SL K+  +  +V   KG +P+  KWVF  K
Sbjct: 806  SDDREPESLKEVLSHPEKNQLMKAMQEEMESLQKNGTY-KLVELPKGKRPLKCKWVFKLK 865

Query: 115  RNKNNEVTRYKARLVAQGFSQRLDIDYEETYSPVVDAITLRYLISLTVCENLDMHLMDVV 174
            ++ + ++ RYKARLV +GF Q+  ID++E +SPVV   ++R ++SL    +L++  +DV 
Sbjct: 866  KDGDCKLVRYKARLVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVK 925

Query: 175  TTYLYGSLENEIYMKIPKGFKILESYNSSSRELCSIKLQRSLYGLKQSGRMLYNRLSEYL 234
            T +L+G LE EIYM+ P+GF++      + ++    KL +SLYGLKQ+ R  Y +   ++
Sbjct: 926  TAFLHGDLEEEIYMEQPEGFEV------AGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFM 985

Query: 235  WKEGYQNNPICPCVFIKK-SQSGFAII 261
              + Y      PCV+ K+ S++ F I+
Sbjct: 986  KSQTYLKTYSDPCVYFKRFSENNFIIL 1005

[Close]

BLAST of Cmc08g0231381 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 125.6 bits (314), Expect = 8.5e-28
Identity = 80/220 (36.36%), Postives = 122/220 (55.45%), Query Frame = 0


Query: 33   NRINVVVDNIFAYNVAHNIIHENEDYEPKSVDECRNRKDWPKWKEVIQAELNSLTKHEFF 92
            N +N VV N      AH I ++     P S DE + R D   W+E I  ELN+   H+  
Sbjct: 874  NSLNKVVLN------AHTIFND----VPNSFDEIQYRDDKSSWEEAINTELNA---HKIN 933

Query: 93   GPVVYTHK--GVKPVGFKWVFVHKRNKNNEVTRYKARLVAQGFSQRLDIDYEETYSPVVD 152
                 T +      V  +WVF  K N+     RYKARLVA+GF+Q+  IDYEET++PV  
Sbjct: 934  NTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQKYQIDYEETFAPVAR 993

Query: 153  AITLRYLISLTVCENLDMHLMDVVTTYLYGSLENEIYMKIPKGFKILESYNSSSRELCSI 212
              + R+++SL +  NL +H MDV T +L G+L+ EIYM++P+G       + +S  +C  
Sbjct: 994  ISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQGI------SCNSDNVC-- 1053

Query: 213  KLQRSLYGLKQSGRMLYNRLSEYLWKEGYQNNPICPCVFI 251
            KL +++YGLKQ+ R  +    + L +  + N+ +  C++I
Sbjct: 1054 KLNKAIYGLKQAARCWFEVFEQALKECEFVNSSVDRCIYI 1072

[Close]

BLAST of Cmc08g0231381 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.4e-22
Identity = 72/238 (30.25%), Postives = 127/238 (53.36%), Query Frame = 0


Query: 13   QVYEDNNEISINYTMTGKRWNRINVVVDNIFAYNVAHNIIHENEDYEPKSVDECRNRKDW 72
            Q+  +NN+  +N    G R  +  ++  N   Y++A ++  E+   EP++  +    KD 
Sbjct: 914  QIVNNNNQAPLNTHSMGTR-AKAGIIKPNP-KYSLAVSLAAES---EPRTAIQA--LKD- 973

Query: 73   PKWKEVIQAELNSLTKHEFFGPVVYTHKGVKPVGFKWVFVHKRNKNNEVTRYKARLVAQG 132
             +W+  + +E+N+   +  +  V      V  VG +W+F  K N +  + RYKARLVA+G
Sbjct: 974  ERWRNAMGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARLVAKG 1033

Query: 133  FSQRLDIDYEETYSPVVDAITLRYLISLTVCENLDMHLMDVVTTYLYGSLENEIYMKIPK 192
            ++QR  +DY ET+SPV+ + ++R ++ + V  +  +  +DV   +L G+L +++YM  P 
Sbjct: 1034 YNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPP 1093

Query: 193  GFKILESYNSSSRELCSIKLQRSLYGLKQSGRMLYNRLSEYLWKEGYQNNPICPCVFI 251
            GF          R     KL+++LYGLKQ+ R  Y  L  YL   G+ N+     +F+
Sbjct: 1094 GF------IDKDRPNYVCKLRKALYGLKQAPRAWYVELRNYLLTIGFVNSVSDTSLFV 1137

[Close]

BLAST of Cmc08g0231381 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 2.4e-22
Identity = 61/187 (32.62%), Postives = 104/187 (55.61%), Query Frame = 0


Query: 74   KWKEVIQAELNSLTKHEFFGPVVYTHKGVKPVGFKWVFVHKRNKNNEVTRYKARLVAQGF 133
            +W++ + +E+N+   +  +  V      V  VG +W+F  K N +  + RYKARLVA+G+
Sbjct: 950  RWRQAMGSEINAQIGNHTWDLVPPPPPSVTIVGCRWIFTKKFNSDGSLNRYKARLVAKGY 1009

Query: 134  SQRLDIDYEETYSPVVDAITLRYLISLTVCENLDMHLMDVVTTYLYGSLENEIYMKIPKG 193
            +QR  +DY ET+SPV+ + ++R ++ + V  +  +  +DV   +L G+L +E+YM  P G
Sbjct: 1010 NQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDEVYMSQPPG 1069

Query: 194  FKILESYNSSSRELCSIKLQRSLYGLKQSGRMLYNRLSEYLWKEGYQNNPICPCVFIKKS 253
            F          R     +L++++YGLKQ+ R  Y  L  YL   G+ N+     +F+   
Sbjct: 1070 FV------DKDRPDYVCRLRKAIYGLKQAPRAWYVELRTYLLTVGFVNSISDTSLFV--L 1128

Query: 254  QSGFAII 261
            Q G +II
Sbjct: 1130 QRGRSII 1128

[Close]

BLAST of Cmc08g0231381 vs. ExPASy Swiss-Prot
Match: Q03619 (Transposon Ty1-ER2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY1B-ER2 PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.8e-09
Identity = 52/201 (25.87%), Postives = 94/201 (46.77%), Query Frame = 0


Query: 70   KDWPKWKEVIQAELNSLTKHEFFG-PVVYTHKGVKP---VGFKWVFVHKRNKNNEVTRYK 129
            K+  K+ +    E+N L K + +     Y  K + P   +   ++F  KR+       +K
Sbjct: 1245 KEKEKYIQAYHKEVNQLLKMKTWDTDRYYDRKEIDPKRVINSMFIFNRKRDGT-----HK 1304

Query: 130  ARLVAQGFSQRLDIDYEETYSPVVDAITLRYL-----ISLTVCENLDMHLMDVVTTYLYG 189
            AR VA+G     DI + +TY P + + T+ +      +SL +  N  +  +D+ + YLY 
Sbjct: 1305 ARFVARG-----DIQHPDTYDPGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYA 1364

Query: 190  SLENEIYMKIPKGFKILESYNSSSRELCSIKLQRSLYGLKQSGRMLYNRLSEYL------ 249
             ++ E+Y++ P    + +           I+L++SLYGLKQSG   Y  +  YL      
Sbjct: 1365 DIKEELYIRPPPHLGMNDKL---------IRLKKSLYGLKQSGANWYETIKSYLIKQCGM 1424

Query: 250  -----WKEGYQNNPICPCVFI 251
                 W   ++N+ +  C+F+
Sbjct: 1425 EEVRGWSCVFKNSQVTICLFV 1426

[Close]

BLAST of Cmc08g0231381 vs. ExPASy TrEMBL
Match: A0A438HZK0 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_792 PE=4 SV=1)

HSP 1 Score: 370.2 bits (949), Expect = 7.4e-99
Identity = 179/253 (70.75%), Postives = 214/253 (84.58%), Query Frame = 0


Query: 10  EETQVYEDNNEISINYTMTGKRWNRINVVVDNIFAYNVAHNIIHENEDYEPKSVDECRNR 69
           EE QV E N EIS++Y  TG++W+R N+V++NIFA+ VA +II  +ED EP++V+ECR+R
Sbjct: 582 EEAQVPE-NCEISVSYVQTGEKWDRNNIVINNIFAFQVASDIIRNDEDPEPRNVEECRHR 641

Query: 70  KDWPKWKEVIQAELNSLTKHEFFGPVVYTHKGVKPVGFKWVFVHKRNKNNEVTRYKARLV 129
            DWPKWKE IQAELNSLTK E FGPVV T + VKPVG+KWVFV KRN+NNE+ RYKARLV
Sbjct: 642 NDWPKWKEAIQAELNSLTKREVFGPVVQTPEDVKPVGYKWVFVRKRNENNEIIRYKARLV 701

Query: 130 AQGFSQRLDIDYEETYSPVVDAITLRYLISLTVCENLDMHLMDVVTTYLYGSLENEIYMK 189
           AQGFSQR  IDYEETYSPV+DAIT R+LISL V E LDM LMDV+T YLYGS++N+IYMK
Sbjct: 702 AQGFSQRPGIDYEETYSPVMDAITFRFLISLAVSEGLDMRLMDVITAYLYGSMDNDIYMK 761

Query: 190 IPKGFKILESYNSSSRELCSIKLQRSLYGLKQSGRMLYNRLSEYLWKEGYQNNPICPCVF 249
           IP+GFK+ ++ N+  R + SIKLQRSLYGLKQSGRM YNRLSEYL KEGY NNPICPC+F
Sbjct: 762 IPEGFKLPDANNTKPRSMYSIKLQRSLYGLKQSGRMWYNRLSEYLLKEGYVNNPICPCIF 821

Query: 250 IKKSQSGFAIIGI 263
           IKKS++GFAII +
Sbjct: 822 IKKSETGFAIIAV 833

[Close]

BLAST of Cmc08g0231381 vs. ExPASy TrEMBL
Match: A0A438ID00 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_1841 PE=4 SV=1)

HSP 1 Score: 370.2 bits (949), Expect = 7.4e-99
Identity = 178/253 (70.36%), Postives = 214/253 (84.58%), Query Frame = 0


Query: 10  EETQVYEDNNEISINYTMTGKRWNRINVVVDNIFAYNVAHNIIHENEDYEPKSVDECRNR 69
           EE QV E N EIS++Y  TG++W+R N+V++NIFA+ VA +II  +ED EP++V+ECR+R
Sbjct: 747 EEAQVPE-NCEISVSYVQTGEKWDRNNIVINNIFAFQVAFDIIRNDEDPEPRNVEECRHR 806

Query: 70  KDWPKWKEVIQAELNSLTKHEFFGPVVYTHKGVKPVGFKWVFVHKRNKNNEVTRYKARLV 129
            DWPKWKE IQAELNSLTK E FGPVV T + VKPVG+KWVFV KRN+NNE+ RYKARLV
Sbjct: 807 NDWPKWKEAIQAELNSLTKREVFGPVVQTPEDVKPVGYKWVFVRKRNENNEIIRYKARLV 866

Query: 130 AQGFSQRLDIDYEETYSPVVDAITLRYLISLTVCENLDMHLMDVVTTYLYGSLENEIYMK 189
           AQGFSQR  +DYEETYSPV+DAIT R+LIS  V E LDM LMDV+TTYLYGS++N+IYMK
Sbjct: 867 AQGFSQRPGVDYEETYSPVMDAITFRFLISFAVSEGLDMRLMDVITTYLYGSMDNDIYMK 926

Query: 190 IPKGFKILESYNSSSRELCSIKLQRSLYGLKQSGRMLYNRLSEYLWKEGYQNNPICPCVF 249
           IP+GFK+ ++ N+  R + SIKLQRSLYGLKQSGRM YNRLSEYL KEGY NNPICPC+F
Sbjct: 927 IPEGFKLPDANNTKPRSMYSIKLQRSLYGLKQSGRMWYNRLSEYLLKEGYVNNPICPCIF 986

Query: 250 IKKSQSGFAIIGI 263
           IKKS++GFAII +
Sbjct: 987 IKKSETGFAIIAV 998

[Close]

BLAST of Cmc08g0231381 vs. ExPASy TrEMBL
Match: A0A438ET65 (Copia protein OS=Vitis vinifera OX=29760 GN=GIP_127 PE=4 SV=1)

HSP 1 Score: 370.2 bits (949), Expect = 7.4e-99
Identity = 179/253 (70.75%), Postives = 214/253 (84.58%), Query Frame = 0


Query: 10  EETQVYEDNNEISINYTMTGKRWNRINVVVDNIFAYNVAHNIIHENEDYEPKSVDECRNR 69
           EE QV E N EIS++Y  TG++W+R N+V++NIFA+ VA +II  +ED EP++V+ECR+R
Sbjct: 501 EEAQVPE-NCEISVSYVQTGEKWDRNNIVINNIFAFQVASDIIRNDEDPEPRNVEECRHR 560

Query: 70  KDWPKWKEVIQAELNSLTKHEFFGPVVYTHKGVKPVGFKWVFVHKRNKNNEVTRYKARLV 129
            DWPKWKE IQAELNSLTK E FGPVV T + VKPVG+KWVFV KRN+NNE+ RYKARLV
Sbjct: 561 NDWPKWKEAIQAELNSLTKREVFGPVVQTPEDVKPVGYKWVFVRKRNENNEIIRYKARLV 620

Query: 130 AQGFSQRLDIDYEETYSPVVDAITLRYLISLTVCENLDMHLMDVVTTYLYGSLENEIYMK 189
           AQGFSQR  IDYEETYSPV+DAIT R+LISL V E LDM LMDV+T YLYGS++N+IYMK
Sbjct: 621 AQGFSQRPGIDYEETYSPVMDAITFRFLISLAVSEGLDMRLMDVITAYLYGSMDNDIYMK 680

Query: 190 IPKGFKILESYNSSSRELCSIKLQRSLYGLKQSGRMLYNRLSEYLWKEGYQNNPICPCVF 249
           IP+GFK+ ++ N+  R + SIKLQRSLYGLKQSGRM YNRLSEYL KEGY NNPICPC+F
Sbjct: 681 IPEGFKLPDANNTKPRSMYSIKLQRSLYGLKQSGRMWYNRLSEYLLKEGYVNNPICPCIF 740

Query: 250 IKKSQSGFAIIGI 263
           IKKS++GFAII +
Sbjct: 741 IKKSETGFAIIAV 752

[Close]

BLAST of Cmc08g0231381 vs. ExPASy TrEMBL
Match: A0A438CTC8 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_1564 PE=4 SV=1)

HSP 1 Score: 370.2 bits (949), Expect = 7.4e-99
Identity = 179/253 (70.75%), Postives = 214/253 (84.58%), Query Frame = 0


Query: 10  EETQVYEDNNEISINYTMTGKRWNRINVVVDNIFAYNVAHNIIHENEDYEPKSVDECRNR 69
           EE QV E N EIS++Y  TG++W+R N+V++NIFA+ VA +II  +ED EP++V+ECR+R
Sbjct: 308 EEAQVPE-NCEISVSYVQTGEKWDRNNIVINNIFAFQVASDIIRNDEDPEPRNVEECRHR 367

Query: 70  KDWPKWKEVIQAELNSLTKHEFFGPVVYTHKGVKPVGFKWVFVHKRNKNNEVTRYKARLV 129
            DWPKWKE IQAELNSLTK E FGPVV T + VKPVG+KWVFV KRN+NNE+ RYKARLV
Sbjct: 368 NDWPKWKEAIQAELNSLTKREVFGPVVQTPEDVKPVGYKWVFVRKRNENNEIIRYKARLV 427

Query: 130 AQGFSQRLDIDYEETYSPVVDAITLRYLISLTVCENLDMHLMDVVTTYLYGSLENEIYMK 189
           AQGFSQR  IDYEETYSPV+DAIT R+LISL V E LDM LMDV+T YLYGS++N+IYMK
Sbjct: 428 AQGFSQRPGIDYEETYSPVMDAITFRFLISLAVSEGLDMRLMDVITAYLYGSMDNDIYMK 487

Query: 190 IPKGFKILESYNSSSRELCSIKLQRSLYGLKQSGRMLYNRLSEYLWKEGYQNNPICPCVF 249
           IP+GFK+ ++ N+  R + SIKLQRSLYGLKQSGRM YNRLSEYL KEGY NNPICPC+F
Sbjct: 488 IPEGFKLPDANNTKPRSMYSIKLQRSLYGLKQSGRMWYNRLSEYLLKEGYVNNPICPCIF 547

Query: 250 IKKSQSGFAIIGI 263
           IKKS++GFAII +
Sbjct: 548 IKKSETGFAIIAV 559

[Close]

BLAST of Cmc08g0231381 vs. ExPASy TrEMBL
Match: A0A438ETU3 (Copia protein OS=Vitis vinifera OX=29760 GN=GIP_69 PE=4 SV=1)

HSP 1 Score: 370.2 bits (949), Expect = 7.4e-99
Identity = 179/253 (70.75%), Postives = 214/253 (84.58%), Query Frame = 0


Query: 10  EETQVYEDNNEISINYTMTGKRWNRINVVVDNIFAYNVAHNIIHENEDYEPKSVDECRNR 69
           EE QV E N EIS++Y  TG++W+R N+V++NIFA+ VA +II  +ED EP++V+ECR+R
Sbjct: 491 EEAQVPE-NCEISVSYVQTGEKWDRNNIVINNIFAFQVASDIIRNDEDPEPRNVEECRHR 550

Query: 70  KDWPKWKEVIQAELNSLTKHEFFGPVVYTHKGVKPVGFKWVFVHKRNKNNEVTRYKARLV 129
            DWPKWKE IQAELNSLTK E FGPVV T + VKPVG+KWVFV KRN+NNE+ RYKARLV
Sbjct: 551 NDWPKWKEAIQAELNSLTKREVFGPVVQTPEDVKPVGYKWVFVRKRNENNEIIRYKARLV 610

Query: 130 AQGFSQRLDIDYEETYSPVVDAITLRYLISLTVCENLDMHLMDVVTTYLYGSLENEIYMK 189
           AQGFSQR  IDYEETYSPV+DAIT R+LISL V E LDM LMDV+T YLYGS++N+IYMK
Sbjct: 611 AQGFSQRPGIDYEETYSPVMDAITFRFLISLAVSEGLDMRLMDVITAYLYGSMDNDIYMK 670

Query: 190 IPKGFKILESYNSSSRELCSIKLQRSLYGLKQSGRMLYNRLSEYLWKEGYQNNPICPCVF 249
           IP+GFK+ ++ N+  R + SIKLQRSLYGLKQSGRM YNRLSEYL KEGY NNPICPC+F
Sbjct: 671 IPEGFKLPDANNTKPRSMYSIKLQRSLYGLKQSGRMWYNRLSEYLLKEGYVNNPICPCIF 730

Query: 250 IKKSQSGFAIIGI 263
           IKKS++GFAII +
Sbjct: 731 IKKSETGFAIIAV 742

[Close]

BLAST of Cmc08g0231381 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 104.0 bits (258), Expect = 1.9e-22
Identity = 71/280 (25.36%), Postives = 134/280 (47.86%), Query Frame = 0


Query: 3   TTSGKNVEETQVYEDNNEISINYTMTGKRWNRINVVVDNIFAYNVAHNIIHENEDY---- 62
           +TS  +++        N++      T  R  R    + + + ++VA   IH+   +    
Sbjct: 8   STSSSSIDIMPSANIQNDVPEPSVHTSHRRTRKPAYLQDYYCHSVASLTIHDISQFLSYE 67

Query: 63  -----------------EPKSVDECRNRKDWPKWKEVIQAELNSL-TKHEFFGPVVYTHK 122
                            EP + +E    K++  W   +  E+ ++ T H +   +     
Sbjct: 68  KVSPLYHSFLVCIAKAKEPSTYNEA---KEFLVWCGAMDDEIGAMETTHTW--EICTLPP 127

Query: 123 GVKPVGFKWVFVHKRNKNNEVTRYKARLVAQGFSQRLDIDYEETYSPVVDAITLRYLISL 182
             KP+G KWV+  K N +  + RYKARLVA+G++Q+  ID+ ET+SPV    +++ ++++
Sbjct: 128 NKKPIGCKWVYKIKYNSDGTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAI 187

Query: 183 TVCENLDMHLMDVVTTYLYGSLENEIYMKIPKGFKILESYNSSSRELCSIKLQRSLYGLK 242
           +   N  +H +D+   +L G L+ EIYMK+P G+   +  +     +C +K  +S+YGLK
Sbjct: 188 SAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLK--KSIYGLK 247

Query: 243 QSGRMLYNRLSEYLWKEGYQNNPICPCVFIKKSQSGFAII 261
           Q+ R  + + S  L   G+  +      F+K + + F  +
Sbjct: 248 QASRQWFLKFSVTLIGFGFVQSHSDHTYFLKITATLFLCV 280

[Close]

BLAST of Cmc08g0231381 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 60.1 bits (144), Expect = 3.1e-09
Identity = 40/102 (39.22%), Postives = 61/102 (59.80%), Query Frame = 0


Query: 59  EPKSVDECRNRKDWPKWKEVIQAELNSLTKHEFFGPVVYTHKGVKPVGFKWVFVHKRNKN 118
           EPKSV      KD P W + +Q EL++L++++ +  +V        +G KWVF  K + +
Sbjct: 27  EPKSV--IFALKD-PGWCQAMQEELDALSRNKTW-ILVPPPVNQNILGCKWVFKTKLHSD 86

Query: 119 NEVTRYKARLVAQGFSQRLDIDYEETYSPVVDAITLRYLISL 161
             + R KARLVA+GF Q   I + ETYSPVV   T+R ++++
Sbjct: 87  GTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNV 124

The following BLAST results are available for this feature:

BLAST of Cmc08g0231381 vs. NCBI nr


Match Name	E-value	Identity	Description
RVW26456.1	1.5e-98	70.75	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
RVW94544.1	1.5e-98	70.36	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
RVW89885.1	1.5e-98	70.75	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
RVW59049.1	1.5e-98	70.75	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
RVW50867.1	1.5e-98	70.75	Copia protein [Vitis vinifera]	[more]

BLAST of Cmc08g0231381 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	7.0e-30	35.27	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	8.5e-28	36.36	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q94HW2	1.4e-22	30.25	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	2.4e-22	32.62	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q03619	1.8e-09	25.87	Transposon Ty1-ER2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC ...	[more]

BLAST of Cmc08g0231381 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A438HZK0	7.4e-99	70.75	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A0A438ID00	7.4e-99	70.36	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A0A438ET65	7.4e-99	70.75	Copia protein OS=Vitis vinifera OX=29760 GN=GIP_127 PE=4 SV=1	[more]
A0A438CTC8	7.4e-99	70.75	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A0A438ETU3	7.4e-99	70.75	Copia protein OS=Vitis vinifera OX=29760 GN=GIP_69 PE=4 SV=1	[more]

BLAST of Cmc08g0231381 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	1.9e-22	25.36	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00820.1	3.1e-09	39.22	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 95..262 e-value: 2.4E-39 score: 135.4
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 47..251

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0231381.1	Cmc08g0231381.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding