Cmc08g0229061 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0229061
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr08: 23757754 .. 23758611 (-)
RNA-Seq Expression	Cmc08g0229061
Synteny	Cmc08g0229061

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCAAATTGAATCTGAAAATTAATAAGATTGCATCTTCTACTTACATGTTGACTTCTTTTAATGTTTGGCATGCTAGATTTTGTCATGTTAATAAAAGATTAATTAGTAACATGAGTAGGTTCAATCTTATACCTAAGTTATATCTGCATGATTTTGAGAAATGTGCATGTTGTAGTCAAGCTAAGATAACTAAAACCTCGCATAAGTTTGTAACTAGATTAACAGAGCCTTTAGAATTAATTAATTCTGACTTATGTGAATTTGATGGGACTTTAACTAGAAACAGTAAAACGTATGTAATTACCTTTATAGACGACTGTTCTGACTACACTTTTATTTATCTGCTTAAAAATAAAAGTGATGCCTATGAAATGTTCAAAGTCTTTGTAACTGAAATAGAGAACCAGTTTAACAAAAGAATTAAGAGACTTCGTAGTGATAAAGGAACTGAATATAATTCAGTTGCTTTCAATGAGTTTTATAACTCAAAAGGAATAATACATGAAACTACTGCGCCTTATTCTCCTGAAATGAATGGAAAAGTAGAAAGAAAGAGTAGAACTCTAACTGAGTTAATAGTTGTTATCTTACTTGAGTCAGTAGCAACACCATCTTGGTTGGGTGAAATAATTAAGATTGTTAATTTTGTTCTTAATAAAATTCCTAAATCAAACAGTAAAACTTCACCATACGAAGTCCTTAAACATAAAACACCAAACTTGTCTTATCTTAGAACTTGGGGCTGTCTAGCTTATGTTAGAGTACCTGATCAAAAAATAAGGAAATTAGCAAGTAGAGCCTATGAATGTGTCTTTATAGGATACGCTGAAAAAAGTAAAGCCTATAGATTCTAA

mRNA sequence

ATGTTCAAATTGAATCTGAAAATTAATAAGATTGCATCTTCTACTTACATGTTGACTTCTTTTAATGTTTGGCATGCTAGATTTTGTCATGTTAATAAAAGATTAATTAGTAACATGAGTAGGTTCAATCTTATACCTAAGTTATATCTGCATGATTTTGAGAAATGTGCATGTTGTAGTCAAGCTAAGATAACTAAAACCTCGCATAAGTTTGTAACTAGATTAACAGAGCCTTTAGAATTAATTAATTCTGACTTATGTGAATTTGATGGGACTTTAACTAGAAACAGTAAAACGTATGTAATTACCTTTATAGACGACTGTTCTGACTACACTTTTATTTATCTGCTTAAAAATAAAAGTGATGCCTATGAAATGTTCAAAGTCTTTGTAACTGAAATAGAGAACCAGTTTAACAAAAGAATTAAGAGACTTCGTAGTGATAAAGGAACTGAATATAATTCAGTTGCTTTCAATGAGTTTTATAACTCAAAAGGAATAATACATGAAACTACTGCGCCTTATTCTCCTGAAATGAATGGAAAAGTAGAAAGAAAGAGTAGAACTCTAACTGAGTTAATAGTTGTTATCTTACTTGAGTCAGTAGCAACACCATCTTGGTTGGGTGAAATAATTAAGATTGTTAATTTTGTTCTTAATAAAATTCCTAAATCAAACAGTAAAACTTCACCATACGAAGTCCTTAAACATAAAACACCAAACTTGTCTTATCTTAGAACTTGGGGCTGTCTAGCTTATGTTAGAGTACCTGATCAAAAAATAAGGAAATTAGCAAGTAGAGCCTATGAATGTGTCTTTATAGGATACGCTGAAAAAAGTAAAGCCTATAGATTCTAA

Coding sequence (CDS)

ATGTTCAAATTGAATCTGAAAATTAATAAGATTGCATCTTCTACTTACATGTTGACTTCTTTTAATGTTTGGCATGCTAGATTTTGTCATGTTAATAAAAGATTAATTAGTAACATGAGTAGGTTCAATCTTATACCTAAGTTATATCTGCATGATTTTGAGAAATGTGCATGTTGTAGTCAAGCTAAGATAACTAAAACCTCGCATAAGTTTGTAACTAGATTAACAGAGCCTTTAGAATTAATTAATTCTGACTTATGTGAATTTGATGGGACTTTAACTAGAAACAGTAAAACGTATGTAATTACCTTTATAGACGACTGTTCTGACTACACTTTTATTTATCTGCTTAAAAATAAAAGTGATGCCTATGAAATGTTCAAAGTCTTTGTAACTGAAATAGAGAACCAGTTTAACAAAAGAATTAAGAGACTTCGTAGTGATAAAGGAACTGAATATAATTCAGTTGCTTTCAATGAGTTTTATAACTCAAAAGGAATAATACATGAAACTACTGCGCCTTATTCTCCTGAAATGAATGGAAAAGTAGAAAGAAAGAGTAGAACTCTAACTGAGTTAATAGTTGTTATCTTACTTGAGTCAGTAGCAACACCATCTTGGTTGGGTGAAATAATTAAGATTGTTAATTTTGTTCTTAATAAAATTCCTAAATCAAACAGTAAAACTTCACCATACGAAGTCCTTAAACATAAAACACCAAACTTGTCTTATCTTAGAACTTGGGGCTGTCTAGCTTATGTTAGAGTACCTGATCAAAAAATAAGGAAATTAGCAAGTAGAGCCTATGAATGTGTCTTTATAGGATACGCTGAAAAAAGTAAAGCCTATAGATTCTAA

Protein sequence

MFKLNLKINKIASSTYMLTSFNVWHARFCHVNKRLISNMSRFNLIPKLYLHDFEKCACCSQAKITKTSHKFVTRLTEPLELINSDLCEFDGTLTRNSKTYVITFIDDCSDYTFIYLLKNKSDAYEMFKVFVTEIENQFNKRIKRLRSDKGTEYNSVAFNEFYNSKGIIHETTAPYSPEMNGKVERKSRTLTELIVVILLESVATPSWLGEIIKIVNFVLNKIPKSNSKTSPYEVLKHKTPNLSYLRTWGCLAYVRVPDQKIRKLASRAYECVFIGYAEKSKAYRF

Homology

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BLAST of Cmc08g0229061 vs. NCBI nr
Match: KAA0034938.1 (putative Polyprotein [Cucumis melo var. makuwa] >TYK21293.1 putative Polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 520.0 bits (1338), Expect = 1.3e-143
Identity = 254/285 (89.12%), Postives = 268/285 (94.04%), Query Frame = 0


Query: 1   MFKLNLKINKIASSTYMLTSFNVWHARFCHVNKRLISNMSRFNLIPKLYLHDFEKCACCS 60
           MFKLNL+INKIASS YMLTSFNVWHAR CHVNKRLISNMSR NLIPKL LHDFEKCACCS
Sbjct: 278 MFKLNLEINKIASSAYMLTSFNVWHARLCHVNKRLISNMSRLNLIPKLSLHDFEKCACCS 337

Query: 61  QAKITKTSHKFVTRLTEPLELINSDLCEFDGTLTRNSKTYVITFIDDCSDYTFIYLLKNK 120
           QAKITKTSHKFVTR+T+PLELI+SDLCEFDGTLTRNSK YV+TFIDDCSDYTFIYLLKNK
Sbjct: 338 QAKITKTSHKFVTRVTKPLELIHSDLCEFDGTLTRNSKRYVVTFIDDCSDYTFIYLLKNK 397

Query: 121 SDAYEMFKVFVTEIENQFNKRIKRLRSDKGTEYNSVAFNEFYNSKGIIHETTAPYSPEMN 180
           SDAYEMFKVFVTEIENQFNKRIKRLRSD+GTEY+SVAFNEFYNSKGIIHETT PYSPEMN
Sbjct: 398 SDAYEMFKVFVTEIENQFNKRIKRLRSDRGTEYDSVAFNEFYNSKGIIHETTTPYSPEMN 457

Query: 181 GKVERKSRTLTELIVVILLESVATPSWLGEIIKIVNFVLNKIPKSNSKTSPYEVLKHKTP 240
           GK ERK+RTLTEL V ILLES A PSW GEIIK VN+VLN+IPKSNSKTSPYEVLKHK P
Sbjct: 458 GKEERKNRTLTELAVAILLESEAAPSWWGEIIKTVNYVLNRIPKSNSKTSPYEVLKHKIP 517

Query: 241 NLSYLRTWGCLAYVRVPDQKIRKLASRAYECVFIGYAEKSKAYRF 286
           NLSYLRTWGCLAYVR+P+ + RKLAS+AYECVFIGYAE SKAYRF
Sbjct: 518 NLSYLRTWGCLAYVRIPNPERRKLASKAYECVFIGYAENSKAYRF 562

[Close]

BLAST of Cmc08g0229061 vs. NCBI nr
Match: ABI34306.1 (Polyprotein, putative [Solanum demissum])

HSP 1 Score: 313.2 bits (801), Expect = 2.4e-81
Identity = 154/285 (54.04%), Postives = 198/285 (69.47%), Query Frame = 0


Query: 1   MFKLNLKINKIASSTYMLTSFNVWHARFCHVNKRLISNMSRFNLIPKLYLHDFEKCACCS 60
           MFKLN+++NK ++S YML+S N WHAR CH+N R +  MS   LIP +   +FEKC  CS
Sbjct: 418 MFKLNVEMNKTSTSVYMLSSTNFWHARLCHINDRYVGIMSSLGLIP-MIKKNFEKCEACS 477

Query: 61  QAKITKTSHKFVTRLTEPLELINSDLCEFDGTLTRNSKTYVITFIDDCSDYTFIYLLKNK 120
           +AKITK  H  V R T+ LEL+++D+CE  G LTR    Y ITFIDD S +T++YL+KNK
Sbjct: 478 KAKITKRPHFQVERKTDLLELVHTDICELGGILTRGGNRYFITFIDDFSKFTYVYLMKNK 537

Query: 121 SDAYEMFKVFVTEIENQFNKRIKRLRSDKGTEYNSVAFNEFYNSKGIIHETTAPYSPEMN 180
           SDA+E FK ++ E+ENQF ++IKR+RSD+G EY S  FN F  S GIIHETT PYSP  N
Sbjct: 538 SDAFENFKTYLHEVENQFGRKIKRIRSDRGREYESNEFNSFVRSLGIIHETTPPYSPSSN 597

Query: 181 GKVERKSRTLTELIVVILLESVATPSWLGEIIKIVNFVLNKIPKSNSKTSPYEVLKHKTP 240
           G  ERK+RTL EL   +L+ES A  ++ GE I    +VLN++P   SK +P+E+ K   P
Sbjct: 598 GVAERKNRTLVELTNAMLIESHAPLNFWGEAILTACYVLNRVPHKKSKLTPFELWKGYKP 657

Query: 241 NLSYLRTWGCLAYVRVPDQKIRKLASRAYECVFIGYAEKSKAYRF 286
           +L YLR WGCLA+VR+ D KI KL  +   C F+GYA  S AYRF
Sbjct: 658 SLGYLRVWGCLAFVRLMDPKITKLGKKVTTCAFLGYASNSTAYRF 701

[Close]

BLAST of Cmc08g0229061 vs. NCBI nr
Match: RVX15136.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 270.0 bits (689), Expect = 2.3e-68
Identity = 136/291 (46.74%), Postives = 188/291 (64.60%), Query Frame = 0


Query: 1   MFKLNL------KINKIASSTYMLTSFNVWHARFCHVNKRLISNMSRFNLIPKLYLHDFE 60
           M+KLN+       +NK ++STYML S N+WH R  HVN   +  +   N IP   ++   
Sbjct: 444 MWKLNVMTIIKSNMNKASTSTYMLESSNLWHGRLGHVNYDTLRRLINLNHIPTFQINSNH 503

Query: 61  KCACCSQAKITKTSHKFVTRLTEPLELINSDLCEFDGTLTRNSKTYVITFIDDCSDYTFI 120
           KC  C +AK+T++S + V R TEPL+LI+SD+C+     TR    Y ITF+DD + Y ++
Sbjct: 504 KCETCVEAKLTRSSFQIVERNTEPLDLIHSDICDLKFVQTRGGNKYFITFVDDSTKYCYV 563

Query: 121 YLLKNKSDAYEMFKVFVTEIENQFNKRIKRLRSDKGTEYNSVAFNEFYNSKGIIHETTAP 180
           YLLK+K +A E F ++ TE+ENQ NK+IK LRSD+G EY S  F +     GIIHETTAP
Sbjct: 564 YLLKSKDEAIEKFVLYKTEVENQLNKKIKVLRSDRGGEYES-PFVDICAQHGIIHETTAP 623

Query: 181 YSPEMNGKVERKSRTLTELIVVILLESVATPSWLGEIIKIVNFVLNKIPKSNSKTSPYEV 240
           YSP+ NG  ERK+RTL E++  +L+ S    +  GE I   N++LNK+PK  ++ +PYE+
Sbjct: 624 YSPQSNGVAERKNRTLKEMMNAMLISSSLPQNMWGEAILTANYLLNKVPKKKAEKTPYEL 683

Query: 241 LKHKTPNLSYLRTWGCLAYVRVPDQKIRKLASRAYECVFIGYAEKSKAYRF 286
            K + P+ +YLR WGCLA V VP  K  K+  +  +C+FIGYA  S AYRF
Sbjct: 684 WKGRKPSYTYLRMWGCLAKVAVPPPKKVKIGPKTIDCIFIGYAHNSNAYRF 733

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BLAST of Cmc08g0229061 vs. NCBI nr
Match: KAG5527251.1 (hypothetical protein RHGRI_028223 [Rhododendron griersonianum])

HSP 1 Score: 269.2 bits (687), Expect = 4.0e-68
Identity = 140/286 (48.95%), Postives = 188/286 (65.73%), Query Frame = 0


Query: 1   MFKLNLKINKIASSTYMLTSFNVWHARFCHVNKRLISNMSRFNLIPKLYLHD--FEKCAC 60
           MFKL++  N  ASS Y++ SF++WH+R  H+N R I NMSRF LI     HD   +KC  
Sbjct: 322 MFKLSINENNTASS-YIVDSFSLWHSRLAHLNFRSIKNMSRFGLI---NYHDNVCDKCEI 381

Query: 61  CSQAKITKTSHKFVTRLTEPLELINSDLCEFDGTLTRNSKTYVITFIDDCSDYTFIYLLK 120
           C++AK+ K S   V R +E L+LI+SD+CE +G LTR  K Y  TF+DD S YTF+YLL+
Sbjct: 382 CAKAKMAKKSFPSVQRNSEILDLIHSDICELNGVLTRGGKRYFATFVDDFSKYTFVYLLR 441

Query: 121 NKSDAYEMFKVFVTEIENQFNKRIKRLRSDKGTEYNSVAFNEFYNSKGIIHETTAPYSPE 180
            K + +  F+ +  E+ENQ NK+IK LRSD+G EY    F++F    GIIH+ TAPYSP+
Sbjct: 442 TKDEVFNKFQAYKNEVENQLNKKIKVLRSDRGMEYFPHEFDDFCEMHGIIHQKTAPYSPQ 501

Query: 181 MNGKVERKSRTLTELIVVILLESVATPSWLGEIIKIVNFVLNKIPKSNSKTSPYEVLKHK 240
            NG  ERK+RTLTE+   +++ + A     GE +    ++ N+I    +   PYE+ K +
Sbjct: 502 QNGLAERKNRTLTEMANCMIVHANAPLYLWGEALYTACYLHNRIISRKTNLCPYELWKGR 561

Query: 241 TPNLSYLRTWGCLAYVRVPDQKIRKLASRAYECVFIGYAEKSKAYR 285
            PNLSYL+ WGCLAY RVPD K  KL  RA + +F+GYAE SKAYR
Sbjct: 562 KPNLSYLKVWGCLAYYRVPDPKRTKLGPRAMKSIFVGYAEHSKAYR 603

[Close]

BLAST of Cmc08g0229061 vs. NCBI nr
Match: RVW92065.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 269.2 bits (687), Expect = 4.0e-68
Identity = 136/291 (46.74%), Postives = 188/291 (64.60%), Query Frame = 0


Query: 1   MFKLNL------KINKIASSTYMLTSFNVWHARFCHVNKRLISNMSRFNLIPKLYLHDFE 60
           M+KLN+       +NK ++STYML S N+WH R  HVN   +  +   N IP   ++   
Sbjct: 444 MWKLNVMTIIKSNMNKASTSTYMLESSNLWHGRLGHVNYDTLRRLINLNHIPTFQINSNH 503

Query: 61  KCACCSQAKITKTSHKFVTRLTEPLELINSDLCEFDGTLTRNSKTYVITFIDDCSDYTFI 120
           KC  C +AK+T++S + V R TEPL+LI+SD+C+     TR    Y ITF+DD + Y ++
Sbjct: 504 KCETCVEAKLTRSSFQSVERNTEPLDLIHSDICDLKFVQTRGGNKYFITFVDDSTKYCYV 563

Query: 121 YLLKNKSDAYEMFKVFVTEIENQFNKRIKRLRSDKGTEYNSVAFNEFYNSKGIIHETTAP 180
           YLLK+K +A E F ++ TE+ENQ NK+IK LRSD+G EY S  F +     GIIHETTAP
Sbjct: 564 YLLKSKDEAIEKFVLYKTEVENQLNKKIKVLRSDRGGEYES-PFVDICAQHGIIHETTAP 623

Query: 181 YSPEMNGKVERKSRTLTELIVVILLESVATPSWLGEIIKIVNFVLNKIPKSNSKTSPYEV 240
           YSP+ NG  ERK+RTL E++  +L+ S    +  GE I   N++LNK+PK  ++ +PYE+
Sbjct: 624 YSPQSNGVAERKNRTLKEMMNAMLISSSLPQNMWGEAILTANYLLNKVPKKKAEKTPYEL 683

Query: 241 LKHKTPNLSYLRTWGCLAYVRVPDQKIRKLASRAYECVFIGYAEKSKAYRF 286
            K + P+ +YLR WGCLA V VP  K  K+  +  +C+FIGYA  S AYRF
Sbjct: 684 WKGRKPSYTYLRMWGCLAKVAVPPPKKVKIGPKTIDCIFIGYAHNSNAYRF 733

[Close]

BLAST of Cmc08g0229061 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 5.1e-34
Identity = 83/267 (31.09%), Postives = 145/267 (54.31%), Query Frame = 0


Query: 20  SFNVWHARFCHVNKRLISNMSRFNLIPKLYLHDFEKCACCSQAKITKTSHKFVT-RLTEP 79
           S ++WH R  H++++ +  +++ +LI        + C  C   K  + S +  + R    
Sbjct: 421 SVDLWHKRMGHMSEKGLQILAKKSLISYAKGTTVKPCDYCLFGKQHRVSFQTSSERKLNI 480

Query: 80  LELINSDLCEFDGTLTRNSKTYVITFIDDCSDYTFIYLLKNKSDAYEMFKVFVTEIENQF 139
           L+L+ SD+C      +     Y +TFIDD S   ++Y+LK K   +++F+ F   +E + 
Sbjct: 481 LDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYILKTKDQVFQVFQKFHALVERET 540

Query: 140 NKRIKRLRSDKGTEYNSVAFNEFYNSKGIIHETTAPYSPEMNGKVERKSRTLTELIVVIL 199
            +++KRLRSD G EY S  F E+ +S GI HE T P +P+ NG  ER +RT+ E +  +L
Sbjct: 541 GRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQHNGVAERMNRTIVEKVRSML 600

Query: 200 LESVATPSWLGEIIKIVNFVLNKIPK-SNSKTSPYEVLKHKTPNLSYLRTWGCLAYVRVP 259
             +    S+ GE ++   +++N+ P    +   P  V  +K  + S+L+ +GC A+  VP
Sbjct: 601 RMAKLPKSFWGEAVQTACYLINRSPSVPLAFEIPERVWTNKEVSYSHLKVFGCRAFAHVP 660

Query: 260 DQKIRKLASRAYECVFIGYAEKSKAYR 285
            ++  KL  ++  C+FIGY ++   YR
Sbjct: 661 KEQRTKLDDKSIPCIFIGYGDEEFGYR 687

[Close]

BLAST of Cmc08g0229061 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 144.1 bits (362), Expect = 2.5e-33
Identity = 85/269 (31.60%), Postives = 141/269 (52.42%), Query Frame = 0


Query: 20  SFNVWHARFCHVN---------KRLISNMSRFNLIPKLYLHDFEKCACCSQAKITKTSHK 79
           +F +WH RF H++         K + S+ S  N + +L     E C    QA++     K
Sbjct: 414 NFRLWHERFGHISDGKLLEIKRKNMFSDQSLLNNL-ELSCEICEPCLNGKQARLPFKQLK 473

Query: 80  FVTRLTEPLELINSDLCEFDGTLTRNSKTYVITFIDDCSDYTFIYLLKNKSDAYEMFKVF 139
             T +  PL +++SD+C     +T + K Y + F+D  + Y   YL+K KSD + MF+ F
Sbjct: 474 DKTHIKRPLFVVHSDVCGPITPVTLDDKNYFVIFVDQFTHYCVTYLIKYKSDVFSMFQDF 533

Query: 140 VTEIENQFNKRIKRLRSDKGTEYNSVAFNEFYNSKGIIHETTAPYSPEMNGKVERKSRTL 199
           V + E  FN ++  L  D G EY S    +F   KGI +  T P++P++NG  ER  RT+
Sbjct: 534 VAKSEAHFNLKVVYLYIDNGREYLSNEMRQFCVKKGISYHLTVPHTPQLNGVSERMIRTI 593

Query: 200 TELIVVILLESVATPSWLGEIIKIVNFVLNKIPKS---NSKTSPYEVLKHKTPNLSYLRT 259
           TE    ++  +    S+ GE +    +++N+IP     +S  +PYE+  +K P L +LR 
Sbjct: 594 TEKARTMVSGAKLDKSFWGEAVLTATYLINRIPSRALVDSSKTPYEMWHNKKPYLKHLRV 653

Query: 260 WGCLAYVRVPDQKIRKLASRAYECVFIGY 277
           +G   YV + + K  K   ++++ +F+GY
Sbjct: 654 FGATVYVHIKN-KQGKFDDKSFKSIFVGY 680

[Close]

BLAST of Cmc08g0229061 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 4.2e-28
Identity = 87/266 (32.71%), Postives = 131/266 (49.25%), Query Frame = 0


Query: 24  WHARFCH----VNKRLISNMSRFNLIPKLYLHDFEKCACCSQAKITKTSHKFVT-RLTEP 83
           WHAR  H    +   +ISN S   L P    H F  C+ C   K  K      T   T P
Sbjct: 467 WHARLGHPAPSILNSVISNYSLSVLNPS---HKFLSCSDCLINKSNKVPFSQSTINSTRP 526

Query: 84  LELINSDLCEFDGTLTRNSKTYVITFIDDCSDYTFIYLLKNKSDAYEMFKVFVTEIENQF 143
           LE I SD+      L+ ++  Y + F+D  + YT++Y LK KS   E F  F   +EN+F
Sbjct: 527 LEYIYSDVWS-SPILSHDNYRYYVIFVDHFTRYTWLYPLKQKSQVKETFITFKNLLENRF 586

Query: 144 NKRIKRLRSDKGTEYNSVAFNEFYNSKGIIHETTAPYSPEMNGKVERKSRTLTELIVVIL 203
             RI    SD G E+  VA  E+++  GI H T+ P++PE NG  ERK R + E  + +L
Sbjct: 587 QTRIGTFYSDNGGEF--VALWEYFSQHGISHLTSPPHTPEHNGLSERKHRHIVETGLTLL 646

Query: 204 LESVATPSWLGEIIKIVNFVLNKIPKSNSK-TSPYEVLKHKTPNLSYLRTWGCLAYVRVP 263
             +    ++      +  +++N++P    +  SP++ L   +PN   LR +GC  Y  + 
Sbjct: 647 SHASIPKTYWPYAFAVAVYLINRLPTPLLQLESPFQKLFGTSPNYDKLRVFGCACYPWLR 706

Query: 264 DQKIRKLASRAYECVFIGYAEKSKAY 284
                KL  ++ +CVF+GY+    AY
Sbjct: 707 PYNQHKLDDKSRQCVFLGYSLTQSAY 726

[Close]

BLAST of Cmc08g0229061 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.7e-26
Identity = 78/266 (29.32%), Postives = 136/266 (51.13%), Query Frame = 0


Query: 24  WHARFCHVNKRLISNMSRFNLIPKLYLHDFEKCACCSQAKITKTSHKF-----VTRLTEP 83
           WH+R  H +  +++++   + +P   L+   K   CS   I K SHK          ++P
Sbjct: 446 WHSRLGHPSLAILNSVISNHSLP--VLNPSHKLLSCSDCFINK-SHKVPFSNSTITSSKP 505

Query: 84  LELINSDLCEFDGTLTRNSKTYVITFIDDCSDYTFIYLLKNKSDAYEMFKVFVTEIENQF 143
           LE I SD+      L+ ++  Y + F+D  + YT++Y LK KS   + F +F + +EN+F
Sbjct: 506 LEYIYSDVWS-SPILSIDNYRYYVIFVDHFTRYTWLYPLKQKSQVKDTFIIFKSLVENRF 565

Query: 144 NKRIKRLRSDKGTEYNSVAFNEFYNSKGIIHETTAPYSPEMNGKVERKSRTLTELIVVIL 203
             RI  L SD G E+  V   ++ +  GI H T+ P++PE NG  ERK R + E+ + +L
Sbjct: 566 QTRIGTLYSDNGGEF--VVLRDYLSQHGISHFTSPPHTPEHNGLSERKHRHIVEMGLTLL 625

Query: 204 LESVATPSWLGEIIKIVNFVLNKIPKSNSK-TSPYEVLKHKTPNLSYLRTWGCLAYVRVP 263
             +    ++      +  +++N++P    +  SP++ L  + PN   L+ +GC  Y  + 
Sbjct: 626 SHASVPKTYWPYAFSVAVYLINRLPTPLLQLQSPFQKLFGQPPNYEKLKVFGCACYPWLR 685

Query: 264 DQKIRKLASRAYECVFIGYAEKSKAY 284
                KL  ++ +C F+GY+    AY
Sbjct: 686 PYNRHKLEDKSKQCAFMGYSLTQSAY 705

[Close]

BLAST of Cmc08g0229061 vs. ExPASy Swiss-Prot
Match: Q12491 (Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY2B-B PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.8e-10
Identity = 48/180 (26.67%), Postives = 85/180 (47.22%), Query Frame = 0


Query: 25  HARFCHVNKRLISNMSRFNLIPKLYLHDFE-------KCACCSQAKITKTSHKFVTRLT- 84
           H    H N R I    + N +  L   D E       +C  C   K TK  H   +RL  
Sbjct: 595 HRMLGHANFRSIQKSLKKNAVTYLKESDIEWSNASTYQCPDCLIGKSTKHRHVKGSRLKY 654

Query: 85  ----EPLELINSDLCEFDGTLTRNSKTYVITFIDDCSDYTFIYLL--KNKSDAYEMFKVF 144
               EP + +++D+      L +++ +Y I+F D+ + + ++Y L  + +     +F   
Sbjct: 655 QESYEPFQYLHTDIFGPVHHLPKSAPSYFISFTDEKTRFQWVYPLHDRREESILNVFTSI 714

Query: 145 VTEIENQFNKRIKRLRSDKGTEYNSVAFNEFYNSKGIIHETTAPYSPEMNGKVERKSRTL 191
           +  I+NQFN R+  ++ D+G+EY +   ++F+ ++GI    T       +G  ER +RTL
Sbjct: 715 LAFIKNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGITACYTTTADSRAHGVAERLNRTL 774

[Close]

BLAST of Cmc08g0229061 vs. ExPASy TrEMBL
Match: A0A5D3DCJ1 (Putative Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1199G00010 PE=4 SV=1)

HSP 1 Score: 520.0 bits (1338), Expect = 6.2e-144
Identity = 254/285 (89.12%), Postives = 268/285 (94.04%), Query Frame = 0


Query: 1   MFKLNLKINKIASSTYMLTSFNVWHARFCHVNKRLISNMSRFNLIPKLYLHDFEKCACCS 60
           MFKLNL+INKIASS YMLTSFNVWHAR CHVNKRLISNMSR NLIPKL LHDFEKCACCS
Sbjct: 278 MFKLNLEINKIASSAYMLTSFNVWHARLCHVNKRLISNMSRLNLIPKLSLHDFEKCACCS 337

Query: 61  QAKITKTSHKFVTRLTEPLELINSDLCEFDGTLTRNSKTYVITFIDDCSDYTFIYLLKNK 120
           QAKITKTSHKFVTR+T+PLELI+SDLCEFDGTLTRNSK YV+TFIDDCSDYTFIYLLKNK
Sbjct: 338 QAKITKTSHKFVTRVTKPLELIHSDLCEFDGTLTRNSKRYVVTFIDDCSDYTFIYLLKNK 397

Query: 121 SDAYEMFKVFVTEIENQFNKRIKRLRSDKGTEYNSVAFNEFYNSKGIIHETTAPYSPEMN 180
           SDAYEMFKVFVTEIENQFNKRIKRLRSD+GTEY+SVAFNEFYNSKGIIHETT PYSPEMN
Sbjct: 398 SDAYEMFKVFVTEIENQFNKRIKRLRSDRGTEYDSVAFNEFYNSKGIIHETTTPYSPEMN 457

Query: 181 GKVERKSRTLTELIVVILLESVATPSWLGEIIKIVNFVLNKIPKSNSKTSPYEVLKHKTP 240
           GK ERK+RTLTEL V ILLES A PSW GEIIK VN+VLN+IPKSNSKTSPYEVLKHK P
Sbjct: 458 GKEERKNRTLTELAVAILLESEAAPSWWGEIIKTVNYVLNRIPKSNSKTSPYEVLKHKIP 517

Query: 241 NLSYLRTWGCLAYVRVPDQKIRKLASRAYECVFIGYAEKSKAYRF 286
           NLSYLRTWGCLAYVR+P+ + RKLAS+AYECVFIGYAE SKAYRF
Sbjct: 518 NLSYLRTWGCLAYVRIPNPERRKLASKAYECVFIGYAENSKAYRF 562

[Close]

BLAST of Cmc08g0229061 vs. ExPASy TrEMBL
Match: A0A7N2R9F3 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 333.6 bits (854), Expect = 8.3e-88
Identity = 174/286 (60.84%), Postives = 203/286 (70.98%), Query Frame = 0


Query: 1   MFKLNLKINKIA-SSTYMLTSFNVWHARFCHVNKRLISNMSRFNLIPKLYLHDFEKCACC 60
           MFKLN++ NK + SS YML+S N WHAR CH+N R +  MS   LIP+L   DFEKC  C
Sbjct: 441 MFKLNVENNKASTSSVYMLSSINFWHARLCHINSRYVGIMSSLGLIPRL-SKDFEKCETC 500

Query: 61  SQAKITKTSHKFVTRLTEPLELINSDLCEFDGTLTRNSKTYVITFIDDCSDYTFIYLLKN 120
           SQAKITK  HK V R TE LELI+SDLCEF+G LTR    Y+ITFIDD S YT IYLLKN
Sbjct: 501 SQAKITKKPHKSVVRNTELLELIHSDLCEFEGILTRGGNRYIITFIDDFSKYTTIYLLKN 560

Query: 121 KSDAYEMFKVFVTEIENQFNKRIKRLRSDKGTEYNSVAFNEFYNSKGIIHETTAPYSPEM 180
           KSDA+E F+ F+ E+ENQF ++IKR+RSD+G EY S AFN F  S GIIHETTAPYSP  
Sbjct: 561 KSDAFEKFQDFLKEVENQFGRKIKRIRSDRGREYESSAFNSFVQSLGIIHETTAPYSPAS 620

Query: 181 NGKVERKSRTLTELIVVILLESVATPSWLGEIIKIVNFVLNKIPKSNSKTSPYEVLKHKT 240
           NG VERK+RTL EL   +L+ES A   + GE I     VLN++P   S T+P+E+ K   
Sbjct: 621 NGVVERKNRTLIELTNAMLIESGAPLHFWGEAILTACHVLNRVPHKKSHTTPFEMWKGHK 680

Query: 241 PNLSYLRTWGCLAYVRVPDQKIRKLASRAYECVFIGYAEKSKAYRF 286
           PNL YLR WGCLAYVR+ D KI KL  RA  C F+GYA  S AYRF
Sbjct: 681 PNLGYLRVWGCLAYVRLTDPKIPKLGIRATTCAFLGYAINSAAYRF 725

[Close]

BLAST of Cmc08g0229061 vs. ExPASy TrEMBL
Match: A0A7N2L531 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 327.4 bits (838), Expect = 5.9e-86
Identity = 171/286 (59.79%), Postives = 201/286 (70.28%), Query Frame = 0


Query: 1   MFKLNLKINKIA-SSTYMLTSFNVWHARFCHVNKRLISNMSRFNLIPKLYLHDFEKCACC 60
           MFKLN++ NK + SS YML+S N WHAR CH+N R +  MS   LIP+L   DFEKC  C
Sbjct: 441 MFKLNVENNKASTSSVYMLSSINFWHARLCHINSRYVGIMSSLGLIPRL-SKDFEKCETC 500

Query: 61  SQAKITKTSHKFVTRLTEPLELINSDLCEFDGTLTRNSKTYVITFIDDCSDYTFIYLLKN 120
           SQAKITK  HK V R TE LELI+SDLCEF+G LTR    Y+ITFIDD S YT IYLLKN
Sbjct: 501 SQAKITKRPHKNVVRNTELLELIHSDLCEFEGILTRGGNRYIITFIDDFSKYTTIYLLKN 560

Query: 121 KSDAYEMFKVFVTEIENQFNKRIKRLRSDKGTEYNSVAFNEFYNSKGIIHETTAPYSPEM 180
           KSDA+E F+ F+ E+ENQF ++IKR+RSD+G EY S AFN F  S GIIHETTAPYSP  
Sbjct: 561 KSDAFEKFQDFLQEVENQFGRKIKRIRSDRGREYESSAFNSFAQSLGIIHETTAPYSPAS 620

Query: 181 NGKVERKSRTLTELIVVILLESVATPSWLGEIIKIVNFVLNKIPKSNSKTSPYEVLKHKT 240
           NG  ERK+RTL EL   +L+ES A   + GE I     VLN++P   S T+P+E+ K   
Sbjct: 621 NGVAERKNRTLIELTNAMLIESGAPLHFWGEAILTACHVLNRVPHKKSHTTPFEMWKGHK 680

Query: 241 PNLSYLRTWGCLAYVRVPDQKIRKLASRAYECVFIGYAEKSKAYRF 286
           PNL YLR W CLAYVR+ D K+ KL  RA  C F+GYA  S AYRF
Sbjct: 681 PNLGYLRAWDCLAYVRLTDPKMPKLGIRATTCAFLGYAINSAAYRF 725

[Close]

BLAST of Cmc08g0229061 vs. ExPASy TrEMBL
Match: Q0KIN7 (Polyprotein, putative OS=Solanum demissum OX=50514 GN=SDM1_27t00018 PE=4 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 1.2e-81
Identity = 154/285 (54.04%), Postives = 198/285 (69.47%), Query Frame = 0


Query: 1   MFKLNLKINKIASSTYMLTSFNVWHARFCHVNKRLISNMSRFNLIPKLYLHDFEKCACCS 60
           MFKLN+++NK ++S YML+S N WHAR CH+N R +  MS   LIP +   +FEKC  CS
Sbjct: 418 MFKLNVEMNKTSTSVYMLSSTNFWHARLCHINDRYVGIMSSLGLIP-MIKKNFEKCEACS 477

Query: 61  QAKITKTSHKFVTRLTEPLELINSDLCEFDGTLTRNSKTYVITFIDDCSDYTFIYLLKNK 120
           +AKITK  H  V R T+ LEL+++D+CE  G LTR    Y ITFIDD S +T++YL+KNK
Sbjct: 478 KAKITKRPHFQVERKTDLLELVHTDICELGGILTRGGNRYFITFIDDFSKFTYVYLMKNK 537

Query: 121 SDAYEMFKVFVTEIENQFNKRIKRLRSDKGTEYNSVAFNEFYNSKGIIHETTAPYSPEMN 180
           SDA+E FK ++ E+ENQF ++IKR+RSD+G EY S  FN F  S GIIHETT PYSP  N
Sbjct: 538 SDAFENFKTYLHEVENQFGRKIKRIRSDRGREYESNEFNSFVRSLGIIHETTPPYSPSSN 597

Query: 181 GKVERKSRTLTELIVVILLESVATPSWLGEIIKIVNFVLNKIPKSNSKTSPYEVLKHKTP 240
           G  ERK+RTL EL   +L+ES A  ++ GE I    +VLN++P   SK +P+E+ K   P
Sbjct: 598 GVAERKNRTLVELTNAMLIESHAPLNFWGEAILTACYVLNRVPHKKSKLTPFELWKGYKP 657

Query: 241 NLSYLRTWGCLAYVRVPDQKIRKLASRAYECVFIGYAEKSKAYRF 286
           +L YLR WGCLA+VR+ D KI KL  +   C F+GYA  S AYRF
Sbjct: 658 SLGYLRVWGCLAFVRLMDPKITKLGKKVTTCAFLGYASNSTAYRF 701

[Close]

BLAST of Cmc08g0229061 vs. ExPASy TrEMBL
Match: A0A438K1P8 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_3292 PE=4 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 1.1e-68
Identity = 136/291 (46.74%), Postives = 188/291 (64.60%), Query Frame = 0


Query: 1   MFKLNL------KINKIASSTYMLTSFNVWHARFCHVNKRLISNMSRFNLIPKLYLHDFE 60
           M+KLN+       +NK ++STYML S N+WH R  HVN   +  +   N IP   ++   
Sbjct: 444 MWKLNVMTIIKSNMNKASTSTYMLESSNLWHGRLGHVNYDTLRRLINLNHIPTFQINSNH 503

Query: 61  KCACCSQAKITKTSHKFVTRLTEPLELINSDLCEFDGTLTRNSKTYVITFIDDCSDYTFI 120
           KC  C +AK+T++S + V R TEPL+LI+SD+C+     TR    Y ITF+DD + Y ++
Sbjct: 504 KCETCVEAKLTRSSFQIVERNTEPLDLIHSDICDLKFVQTRGGNKYFITFVDDSTKYCYV 563

Query: 121 YLLKNKSDAYEMFKVFVTEIENQFNKRIKRLRSDKGTEYNSVAFNEFYNSKGIIHETTAP 180
           YLLK+K +A E F ++ TE+ENQ NK+IK LRSD+G EY S  F +     GIIHETTAP
Sbjct: 564 YLLKSKDEAIEKFVLYKTEVENQLNKKIKVLRSDRGGEYES-PFVDICAQHGIIHETTAP 623

Query: 181 YSPEMNGKVERKSRTLTELIVVILLESVATPSWLGEIIKIVNFVLNKIPKSNSKTSPYEV 240
           YSP+ NG  ERK+RTL E++  +L+ S    +  GE I   N++LNK+PK  ++ +PYE+
Sbjct: 624 YSPQSNGVAERKNRTLKEMMNAMLISSSLPQNMWGEAILTANYLLNKVPKKKAEKTPYEL 683

Query: 241 LKHKTPNLSYLRTWGCLAYVRVPDQKIRKLASRAYECVFIGYAEKSKAYRF 286
            K + P+ +YLR WGCLA V VP  K  K+  +  +C+FIGYA  S AYRF
Sbjct: 684 WKGRKPSYTYLRMWGCLAKVAVPPPKKVKIGPKTIDCIFIGYAHNSNAYRF 733

The following BLAST results are available for this feature:

BLAST of Cmc08g0229061 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0034938.1	1.3e-143	89.12	putative Polyprotein [Cucumis melo var. makuwa] >TYK21293.1 putative Polyprotein...	[more]
ABI34306.1	2.4e-81	54.04	Polyprotein, putative [Solanum demissum]	[more]
RVX15136.1	2.3e-68	46.74	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
KAG5527251.1	4.0e-68	48.95	hypothetical protein RHGRI_028223 [Rhododendron griersonianum]	[more]
RVW92065.1	4.0e-68	46.74	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]

BLAST of Cmc08g0229061 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	5.1e-34	31.09	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	2.5e-33	31.60	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q94HW2	4.2e-28	32.71	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	1.7e-26	29.32	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q12491	1.8e-10	26.67	Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of Cmc08g0229061 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DCJ1	6.2e-144	89.12	Putative Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119...	[more]
A0A7N2R9F3	8.3e-88	60.84	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A7N2L531	5.9e-86	59.79	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
Q0KIN7	1.2e-81	54.04	Polyprotein, putative OS=Solanum demissum OX=50514 GN=SDM1_27t00018 PE=4 SV=1	[more]
A0A438K1P8	1.1e-68	46.74	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]

BLAST of Cmc08g0229061 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 70..249 e-value: 1.9E-34 score: 120.7
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 76..177 e-value: 1.7E-16 score: 60.4
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 74..239 score: 22.738121
IPR025724	GAG-pre-integrase domain	PFAM	PF13976	gag_pre-integrs	coord: 13..63 e-value: 1.4E-9 score: 37.7
None	No IPR available	PANTHER	PTHR11439:SF324	RIBONUCLEASE H-LIKE DOMAIN, GAG-PRE-INTEGRASE DOMAIN, GAG-POLYPEPTIDE OF LTR COPIA-TYPE-RELATED	coord: 62..229
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 62..229
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 74..236

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0229061.1	Cmc08g0229061.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding