Cmc08g0228461 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0228461
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr08: 22710037 .. 22710366 (+)
RNA-Seq Expression	Cmc08g0228461
Synteny	Cmc08g0228461

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCAATTCTAAGCCTGTCACAACTTCGATTGAAACTGGGACCAAATTGTTCAAACATGAAGAAGGAGATGATGTTGATCCTTCATATTTCAAAAGTTTGGTTGGGAGTTTGAGATACTTGACTTGCACACGACTAGATATTCTTTTCAGTGTTGGATTGGTGAGTCAATTTATGGAATCTCCTACAACTACTCATTTGAAAGTGGCAAAGAGAATTCTTCGTTACCTGAAAGGTACGCTTGGCTCTGAGTTGTTTTATTTTTCATCTAAAGAATTCAAGCTTGAAGGCTATTGTGAGAGTGACTGGGCTGGAGATACTAATGATTGA

mRNA sequence

ATGATCAATTCTAAGCCTGTCACAACTTCGATTGAAACTGGGACCAAATTGTTCAAACATGAAGAAGGAGATGATGTTGATCCTTCATATTTCAAAAGTTTGGTTGGGAGTTTGAGATACTTGACTTGCACACGACTAGATATTCTTTTCAGTGTTGGATTGGTGAGTCAATTTATGGAATCTCCTACAACTACTCATTTGAAAGTGGCAAAGAGAATTCTTCGTTACCTGAAAGGTACGCTTGGCTCTGAGTTGTTTTATTTTTCATCTAAAGAATTCAAGCTTGAAGGCTATTGTGAGAGTGACTGGGCTGGAGATACTAATGATTGA

Coding sequence (CDS)

ATGATCAATTCTAAGCCTGTCACAACTTCGATTGAAACTGGGACCAAATTGTTCAAACATGAAGAAGGAGATGATGTTGATCCTTCATATTTCAAAAGTTTGGTTGGGAGTTTGAGATACTTGACTTGCACACGACTAGATATTCTTTTCAGTGTTGGATTGGTGAGTCAATTTATGGAATCTCCTACAACTACTCATTTGAAAGTGGCAAAGAGAATTCTTCGTTACCTGAAAGGTACGCTTGGCTCTGAGTTGTTTTATTTTTCATCTAAAGAATTCAAGCTTGAAGGCTATTGTGAGAGTGACTGGGCTGGAGATACTAATGATTGA

Protein sequence

MINSKPVTTSIETGTKLFKHEEGDDVDPSYFKSLVGSLRYLTCTRLDILFSVGLVSQFMESPTTTHLKVAKRILRYLKGTLGSELFYFSSKEFKLEGYCESDWAGDTND

Homology

[Close]

BLAST of Cmc08g0228461 vs. NCBI nr
Match: TYK05470.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 218.4 bits (555), Expect = 3.1e-53
Identity = 107/109 (98.17%), Postives = 107/109 (98.17%), Query Frame = 0


Query: 1   MINSKPVTTSIETGTKLFKHEEGDDVDPSYFKSLVGSLRYLTCTRLDILFSVGLVSQFME 60
           MINSKPVTTSIETGTKLFKHEEGDDVDPSYFKSLVGSLRYLTCTRLDILFSVGLVSQFME
Sbjct: 633 MINSKPVTTSIETGTKLFKHEEGDDVDPSYFKSLVGSLRYLTCTRLDILFSVGLVSQFME 692

Query: 61  SPTTTHLKVAKRILRYLKGTLGSELFYFSSKEFKLEGYCESDWAGDTND 110
           SPTTTHLKVAKRILRYLKGTL  ELFYFSSKEFKLEGYCESDWAGDTND
Sbjct: 693 SPTTTHLKVAKRILRYLKGTLDYELFYFSSKEFKLEGYCESDWAGDTND 741

[Close]

BLAST of Cmc08g0228461 vs. NCBI nr
Match: KAA0034928.1 (retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 216.1 bits (549), Expect = 1.5e-52
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 5   KPVTTSIETGTKLFKHEEGDDVDPSYFKSLVGSLRYLTCTRLDILFSVGLVSQFMESPTT 64
           KPVTTSIETGTKLFKHEEGDDVDPSYFKSLVGSLRYLTCTRLDILFSVGLVSQFMESPTT
Sbjct: 95  KPVTTSIETGTKLFKHEEGDDVDPSYFKSLVGSLRYLTCTRLDILFSVGLVSQFMESPTT 154

Query: 65  THLKVAKRILRYLKGTLGSELFYFSSKEFKLEGYCESDWAGDTND 110
           THLKVAKRILRYLKGTLGSELFYFSSKEFKLEGYCESDWAGDTND
Sbjct: 155 THLKVAKRILRYLKGTLGSELFYFSSKEFKLEGYCESDWAGDTND 199

[Close]

BLAST of Cmc08g0228461 vs. NCBI nr
Match: TYK18362.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 198.0 bits (502), Expect = 4.3e-47
Identity = 97/109 (88.99%), Postives = 101/109 (92.66%), Query Frame = 0


Query: 1    MINSKPVTTSIETGTKLFKHEEGDDVDPSYFKSLVGSLRYLTCTRLDILFSVGLVSQFME 60
            M+NSKPV T IETGTKL KHEEGDDVDPSYFKSLVGSLRYLTCTR DILFSVGLVS+FME
Sbjct: 1085 MMNSKPVATPIETGTKLSKHEEGDDVDPSYFKSLVGSLRYLTCTRPDILFSVGLVSRFME 1144

Query: 61   SPTTTHLKVAKRILRYLKGTLGSELFYFSSKEFKLEGYCESDWAGDTND 110
            SPTTTHLKVAKRILRYL+GTL   LFY SSKEFKLEGYC+SDWAGDTND
Sbjct: 1145 SPTTTHLKVAKRILRYLRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTND 1193

[Close]

BLAST of Cmc08g0228461 vs. NCBI nr
Match: KAA0047979.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 198.0 bits (502), Expect = 4.3e-47
Identity = 97/109 (88.99%), Postives = 101/109 (92.66%), Query Frame = 0


Query: 1    MINSKPVTTSIETGTKLFKHEEGDDVDPSYFKSLVGSLRYLTCTRLDILFSVGLVSQFME 60
            M+NSKPV T IETGTKL KHEEGDDVDPSYFKSLVGSLRYLTCTR DILFSVGLVS+FME
Sbjct: 1085 MMNSKPVATPIETGTKLSKHEEGDDVDPSYFKSLVGSLRYLTCTRPDILFSVGLVSRFME 1144

Query: 61   SPTTTHLKVAKRILRYLKGTLGSELFYFSSKEFKLEGYCESDWAGDTND 110
            SPTTTHLKVAKRILRYL+GTL   LFY SSKEFKLEGYC+SDWAGDTND
Sbjct: 1145 SPTTTHLKVAKRILRYLRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTND 1193

[Close]

BLAST of Cmc08g0228461 vs. NCBI nr
Match: TYK06895.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 198.0 bits (502), Expect = 4.3e-47
Identity = 97/109 (88.99%), Postives = 101/109 (92.66%), Query Frame = 0


Query: 1    MINSKPVTTSIETGTKLFKHEEGDDVDPSYFKSLVGSLRYLTCTRLDILFSVGLVSQFME 60
            M+NSKPV T IETGTKL KHEEGDDVDPSYFKSLVGSLRYLTCTR DILFSVGLVS+FME
Sbjct: 1085 MMNSKPVATPIETGTKLSKHEEGDDVDPSYFKSLVGSLRYLTCTRPDILFSVGLVSRFME 1144

Query: 61   SPTTTHLKVAKRILRYLKGTLGSELFYFSSKEFKLEGYCESDWAGDTND 110
            SPTTTHLKVAKRILRYL+GTL   LFY SSKEFKLEGYC+SDWAGDTND
Sbjct: 1145 SPTTTHLKVAKRILRYLRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTND 1193

[Close]

BLAST of Cmc08g0228461 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 6.7e-19
Identity = 48/109 (44.04%), Postives = 64/109 (58.72%), Query Frame = 0


Query: 1    MINSKPVTTSIETGTKLFKHEEGDDVDPSYFKSLVGSLRYLTCTRLDILFSVGLVSQFME 60
            MI +KPVTT +    KL  +      DP+ ++ +VGSL+YL  TR DI ++V  +SQFM 
Sbjct: 1215 MITAKPVTTPMAPSPKLSLYSGTKLTDPTEYRGIVGSLQYLAFTRPDISYAVNRLSQFMH 1274

Query: 61   SPTTTHLKVAKRILRYLKGTLGSELFYFSSKEFKLEGYCESDWAGDTND 110
             PT  HL+  KRILRYL GT    +F        L  Y ++DWAGD +D
Sbjct: 1275 MPTEEHLQALKRILRYLAGTPNHGIFLKKGNTLSLHAYSDADWAGDKDD 1323

[Close]

BLAST of Cmc08g0228461 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 2.5e-18
Identity = 45/109 (41.28%), Postives = 63/109 (57.80%), Query Frame = 0


Query: 1    MINSKPVTTSIETGTKLFKHEEGDDVDPSYFKSLVGSLRYLTCTRLDILFSVGLVSQFME 60
            M+ +KPV T + T  KL  H      DP+ ++ +VGSL+YL  TR D+ ++V  +SQ+M 
Sbjct: 1198 MLTAKPVATPMATSPKLTLHSGTKLPDPTEYRGIVGSLQYLAFTRPDLSYAVNRLSQYMH 1257

Query: 61   SPTTTHLKVAKRILRYLKGTLGSELFYFSSKEFKLEGYCESDWAGDTND 110
             PT  H    KR+LRYL GT    +F        L  Y ++DWAGDT+D
Sbjct: 1258 MPTDDHWNALKRVLRYLAGTPDHGIFLKKGNTLSLHAYSDADWAGDTDD 1306

[Close]

BLAST of Cmc08g0228461 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.5e-15
Identity = 42/112 (37.50%), Postives = 68/112 (60.71%), Query Frame = 0


Query: 1   MINSKPVTT----SIETGTKLFKHEEGDDVDPSYFKSLVGSLRYLTCTRLDILFSVGLVS 60
           M++ KP++T     + +     K+      DPS F+S+VG+L+YLT TR DI ++V +V 
Sbjct: 71  MLDCKPMSTPLPLKLNSSVSTAKYP-----DPSDFRSIVGALQYLTLTRPDISYAVNIVC 130

Query: 61  QFMESPTTTHLKVAKRILRYLKGTLGSELFYFSSKEFKLEGYCESDWAGDTN 109
           Q M  PT     + KR+LRY+KGT+   L+   + +  ++ +C+SDWAG T+
Sbjct: 131 QRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTS 177

[Close]

BLAST of Cmc08g0228461 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 4.2e-13
Identity = 47/116 (40.52%), Postives = 68/116 (58.62%), Query Frame = 0


Query: 1    MINSKPVTTSIETGTKLFKH------EEGDDVDPSYFKSLVGSLRY-LTCTRLDILFSVG 60
            M N+KPV+T +    KL K       EE  ++    + S VGSL Y + CTR DI  +VG
Sbjct: 1075 MKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKVPYSSAVGSLMYAMVCTRPDIAHAVG 1134

Query: 61   LVSQFMESPTTTHLKVAKRILRYLKGTLGSELFYFSSKEFKLEGYCESDWAGDTND 110
            +VS+F+E+P   H +  K ILRYL+GT G +   F   +  L+GY ++D AGD ++
Sbjct: 1135 VVSRFLENPGKEHWEAVKWILRYLRGTTG-DCLCFGGSDPILKGYTDADMAGDIDN 1189

[Close]

BLAST of Cmc08g0228461 vs. ExPASy Swiss-Prot
Match: P93290 (Uncharacterized mitochondrial protein AtMg00240 OS=Arabidopsis thaliana OX=3702 GN=AtMg00240 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.8e-09
Identity = 26/65 (40.00%), Postives = 43/65 (66.15%), Query Frame = 0


Query: 40  YLTCTRLDILFSVGLVSQFMESPTTTHLKVAKRILRYLKGTLGSELFYFSSKEFKLEGYC 99
           YLT TR D+ F+V  +SQF  +  T  ++   ++L Y+KGT+G  LFY ++ + +L+ + 
Sbjct: 2   YLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAFA 61

Query: 100 ESDWA 105
           +SDWA
Sbjct: 62  DSDWA 66

[Close]

BLAST of Cmc08g0228461 vs. ExPASy TrEMBL
Match: A0A5D3C291 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold83G001760 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 1.5e-53
Identity = 107/109 (98.17%), Postives = 107/109 (98.17%), Query Frame = 0


Query: 1   MINSKPVTTSIETGTKLFKHEEGDDVDPSYFKSLVGSLRYLTCTRLDILFSVGLVSQFME 60
           MINSKPVTTSIETGTKLFKHEEGDDVDPSYFKSLVGSLRYLTCTRLDILFSVGLVSQFME
Sbjct: 633 MINSKPVTTSIETGTKLFKHEEGDDVDPSYFKSLVGSLRYLTCTRLDILFSVGLVSQFME 692

Query: 61  SPTTTHLKVAKRILRYLKGTLGSELFYFSSKEFKLEGYCESDWAGDTND 110
           SPTTTHLKVAKRILRYLKGTL  ELFYFSSKEFKLEGYCESDWAGDTND
Sbjct: 693 SPTTTHLKVAKRILRYLKGTLDYELFYFSSKEFKLEGYCESDWAGDTND 741

[Close]

BLAST of Cmc08g0228461 vs. ExPASy TrEMBL
Match: A0A5A7SWD9 (Retrovirus-related pol polyprotein from transposon tnt 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold103G00600 PE=4 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 7.4e-53
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 5   KPVTTSIETGTKLFKHEEGDDVDPSYFKSLVGSLRYLTCTRLDILFSVGLVSQFMESPTT 64
           KPVTTSIETGTKLFKHEEGDDVDPSYFKSLVGSLRYLTCTRLDILFSVGLVSQFMESPTT
Sbjct: 95  KPVTTSIETGTKLFKHEEGDDVDPSYFKSLVGSLRYLTCTRLDILFSVGLVSQFMESPTT 154

Query: 65  THLKVAKRILRYLKGTLGSELFYFSSKEFKLEGYCESDWAGDTND 110
           THLKVAKRILRYLKGTLGSELFYFSSKEFKLEGYCESDWAGDTND
Sbjct: 155 THLKVAKRILRYLKGTLGSELFYFSSKEFKLEGYCESDWAGDTND 199

[Close]

BLAST of Cmc08g0228461 vs. ExPASy TrEMBL
Match: A0A5A7V3X9 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G003030 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 2.1e-47
Identity = 97/109 (88.99%), Postives = 101/109 (92.66%), Query Frame = 0


Query: 1    MINSKPVTTSIETGTKLFKHEEGDDVDPSYFKSLVGSLRYLTCTRLDILFSVGLVSQFME 60
            M+NSKPV T IETGTKL KHEEGDDVDPSYFKSLVGSLRYLTCTR DILFSVGLVS+FME
Sbjct: 1085 MMNSKPVATPIETGTKLSKHEEGDDVDPSYFKSLVGSLRYLTCTRPDILFSVGLVSRFME 1144

Query: 61   SPTTTHLKVAKRILRYLKGTLGSELFYFSSKEFKLEGYCESDWAGDTND 110
            SPTTTHLKVAKRILRYL+GTL   LFY SSKEFKLEGYC+SDWAGDTND
Sbjct: 1145 SPTTTHLKVAKRILRYLRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTND 1193

[Close]

BLAST of Cmc08g0228461 vs. ExPASy TrEMBL
Match: A0A5A7SJX6 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G002010 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 2.1e-47
Identity = 97/109 (88.99%), Postives = 101/109 (92.66%), Query Frame = 0


Query: 1    MINSKPVTTSIETGTKLFKHEEGDDVDPSYFKSLVGSLRYLTCTRLDILFSVGLVSQFME 60
            M+NSKPV T IETGTKL KHEEGDDVDPSYFKSLVGSLRYLTCTR DILFSVGLVS+FME
Sbjct: 1085 MMNSKPVATPIETGTKLSKHEEGDDVDPSYFKSLVGSLRYLTCTRPDILFSVGLVSRFME 1144

Query: 61   SPTTTHLKVAKRILRYLKGTLGSELFYFSSKEFKLEGYCESDWAGDTND 110
            SPTTTHLKVAKRILRYL+GTL   LFY SSKEFKLEGYC+SDWAGDTND
Sbjct: 1145 SPTTTHLKVAKRILRYLRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTND 1193

[Close]

BLAST of Cmc08g0228461 vs. ExPASy TrEMBL
Match: A0A5D3D497 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G00810 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 2.1e-47
Identity = 97/109 (88.99%), Postives = 101/109 (92.66%), Query Frame = 0


Query: 1    MINSKPVTTSIETGTKLFKHEEGDDVDPSYFKSLVGSLRYLTCTRLDILFSVGLVSQFME 60
            M+NSKPV T IETGTKL KHEEGDDVDPSYFKSLVGSLRYLTCTR DILFSVGLVS+FME
Sbjct: 1085 MMNSKPVATPIETGTKLSKHEEGDDVDPSYFKSLVGSLRYLTCTRPDILFSVGLVSRFME 1144

Query: 61   SPTTTHLKVAKRILRYLKGTLGSELFYFSSKEFKLEGYCESDWAGDTND 110
            SPTTTHLKVAKRILRYL+GTL   LFY SSKEFKLEGYC+SDWAGDTND
Sbjct: 1145 SPTTTHLKVAKRILRYLRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTND 1193

[Close]

BLAST of Cmc08g0228461 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 83.6 bits (205), Expect = 1.1e-16
Identity = 42/112 (37.50%), Postives = 68/112 (60.71%), Query Frame = 0


Query: 1   MINSKPVTT----SIETGTKLFKHEEGDDVDPSYFKSLVGSLRYLTCTRLDILFSVGLVS 60
           M++ KP++T     + +     K+      DPS F+S+VG+L+YLT TR DI ++V +V 
Sbjct: 71  MLDCKPMSTPLPLKLNSSVSTAKYP-----DPSDFRSIVGALQYLTLTRPDISYAVNIVC 130

Query: 61  QFMESPTTTHLKVAKRILRYLKGTLGSELFYFSSKEFKLEGYCESDWAGDTN 109
           Q M  PT     + KR+LRY+KGT+   L+   + +  ++ +C+SDWAG T+
Sbjct: 131 QRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTS 177

[Close]

BLAST of Cmc08g0228461 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 80.5 bits (197), Expect = 9.3e-16
Identity = 38/103 (36.89%), Postives = 59/103 (57.28%), Query Frame = 0


Query: 1   MINSKPVTTSIETGTKLFKHEEGDDVDPSYFKSLVGSLRYLTCTRLDILFSVGLVSQFME 60
           ++  KP +  ++       H  GD VD   ++ L+G L YL  TRLDI F+V  +SQF E
Sbjct: 348 LLGCKPSSVPMDPSVTFSAHSGGDFVDAKAYRRLIGRLMYLQITRLDISFAVNKLSQFSE 407

Query: 61  SPTTTHLKVAKRILRYLKGTLGSELFYFSSKEFKLEGYCESDW 104
           +P   H +   +IL Y+KGT+G  LFY S  E +L+ + ++ +
Sbjct: 408 APRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQVFSDASF 450

[Close]

BLAST of Cmc08g0228461 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 62.8 bits (151), Expect = 2.0e-10
Identity = 26/65 (40.00%), Postives = 43/65 (66.15%), Query Frame = 0


Query: 40  YLTCTRLDILFSVGLVSQFMESPTTTHLKVAKRILRYLKGTLGSELFYFSSKEFKLEGYC 99
           YLT TR D+ F+V  +SQF  +  T  ++   ++L Y+KGT+G  LFY ++ + +L+ + 
Sbjct: 2   YLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAFA 61

Query: 100 ESDWA 105
           +SDWA
Sbjct: 62  DSDWA 66

The following BLAST results are available for this feature:

BLAST of Cmc08g0228461 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK05470.1	3.1e-53	98.17	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0034928.1	1.5e-52	100.00	retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. m...	[more]
TYK18362.1	4.3e-47	88.99	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0047979.1	4.3e-47	88.99	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK06895.1	4.3e-47	88.99	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]

BLAST of Cmc08g0228461 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94HW2	6.7e-19	44.04	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	2.5e-18	41.28	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P92519	1.5e-15	37.50	Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 ...	[more]
P10978	4.2e-13	40.52	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P93290	2.8e-09	40.00	Uncharacterized mitochondrial protein AtMg00240 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cmc08g0228461 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C291	1.5e-53	98.17	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7SWD9	7.4e-53	100.00	Retrovirus-related pol polyprotein from transposon tnt 1-94 OS=Cucumis melo var....	[more]
A0A5A7V3X9	2.1e-47	88.99	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7SJX6	2.1e-47	88.99	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3D497	2.1e-47	88.99	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]

BLAST of Cmc08g0228461 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00810.1	1.1e-16	37.50	DNA/RNA polymerases superfamily protein	[more]
AT4G23160.1	9.3e-16	36.89	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00240.1	2.0e-10	40.00	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 23..109
None	No IPR available	PANTHER	PTHR11439:SF308	SUBFAMILY NOT NAMED	coord: 23..109

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0228461.1	Cmc08g0228461.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding