Cmc08g0228231 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0228231
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr08: 21970135 .. 21970746 (+)
RNA-Seq Expression	Cmc08g0228231
Synteny	Cmc08g0228231

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTATTCATATTGTCAGTCAATTTATGGCTGCTCCTAGAACCACTCATTTTTACTGCTATGTTTGGTATTCTTCGCTACATTAAGGGAACCTTGGGACATAGACTCCAGTTTTCCTTTCAATCATCTCTCATATTATCTGGCTACTCTTATGCAAATTGGGTTGGGGATCCCACTAATCGGCGTTCTACAACAGGTTACTGTTTTTACTTAGGCGATTCTCTCATTTCTTGGTGTAGTAAGAAACAAAGTGTTGTCTCTCGTTCCAGCACTGAATCAGAATATTGTGCCCTTGCTGATGCTACTACTGATCTTCTATGGCTTCGCTGGCTTCTTCCTGACATGGGTGTTCCCCAACAGGGACCCACTCTCCTCCATTGTGATAATCGTAGTGCCATCCAAATTGCCCACAATGATGTTTTTCATGAACGTACAAAGCACATCGAAAATGGTTGTCACTTCATTCGTCATCATCTCTTGAGCAATACTCTTCTCTTACAACCTGTCTCCACCACTGGGCAACCAGCATATATCTTCACCAAAGCTTTACCATCTACCCGCTTCAATCAATTACTTACCAAACTCAAGCTGACAGATACTCTACCACCTTGA

mRNA sequence

ATGTTATTCATATTGTCAGTCAATTTATGGCTGCTCCTAGAACCACTCATTTTTACTGCTATGTTTGGTATTCTTCGCTACATTAAGGGAACCTTGGGACATAGACTCCAGTTTTCCTTTCAATCATCTCTCATATTATCTGGCTACTCTTATGCAAATTGGGTTGGGGATCCCACTAATCGGCGTTCTACAACAGGTTACTGTTTTTACTTAGGCGATTCTCTCATTTCTTGGTGTAGTAAGAAACAAAGTGTTGTCTCTCGTTCCAGCACTGAATCAGAATATTGTGCCCTTGCTGATGCTACTACTGATCTTCTATGGCTTCGCTGGCTTCTTCCTGACATGGGTGTTCCCCAACAGGGACCCACTCTCCTCCATTGTGATAATCGTAGTGCCATCCAAATTGCCCACAATGATGTTTTTCATGAACGTACAAAGCACATCGAAAATGGTTGTCACTTCATTCGTCATCATCTCTTGAGCAATACTCTTCTCTTACAACCTGTCTCCACCACTGGGCAACCAGCATATATCTTCACCAAAGCTTTACCATCTACCCGCTTCAATCAATTACTTACCAAACTCAAGCTGACAGATACTCTACCACCTTGA

Coding sequence (CDS)

ATGTTATTCATATTGTCAGTCAATTTATGGCTGCTCCTAGAACCACTCATTTTTACTGCTATGTTTGGTATTCTTCGCTACATTAAGGGAACCTTGGGACATAGACTCCAGTTTTCCTTTCAATCATCTCTCATATTATCTGGCTACTCTTATGCAAATTGGGTTGGGGATCCCACTAATCGGCGTTCTACAACAGGTTACTGTTTTTACTTAGGCGATTCTCTCATTTCTTGGTGTAGTAAGAAACAAAGTGTTGTCTCTCGTTCCAGCACTGAATCAGAATATTGTGCCCTTGCTGATGCTACTACTGATCTTCTATGGCTTCGCTGGCTTCTTCCTGACATGGGTGTTCCCCAACAGGGACCCACTCTCCTCCATTGTGATAATCGTAGTGCCATCCAAATTGCCCACAATGATGTTTTTCATGAACGTACAAAGCACATCGAAAATGGTTGTCACTTCATTCGTCATCATCTCTTGAGCAATACTCTTCTCTTACAACCTGTCTCCACCACTGGGCAACCAGCATATATCTTCACCAAAGCTTTACCATCTACCCGCTTCAATCAATTACTTACCAAACTCAAGCTGACAGATACTCTACCACCTTGA

Protein sequence

MLFILSVNLWLLLEPLIFTAMFGILRYIKGTLGHRLQFSFQSSLILSGYSYANWVGDPTNRRSTTGYCFYLGDSLISWCSKKQSVVSRSSTESEYCALADATTDLLWLRWLLPDMGVPQQGPTLLHCDNRSAIQIAHNDVFHERTKHIENGCHFIRHHLLSNTLLLQPVSTTGQPAYIFTKALPSTRFNQLLTKLKLTDTLPP

Homology

[Close]

BLAST of Cmc08g0228231 vs. NCBI nr
Match: KAA0041342.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 378.6 bits (971), Expect = 3.3e-101
Identity = 182/183 (99.45%), Postives = 182/183 (99.45%), Query Frame = 0


Query: 21  MFGILRYIKGTLGHRLQFSFQSSLILSGYSYANWVGDPTNRRSTTGYCFYLGDSLISWCS 80
           MFGILRYIKGTLGHRLQFSFQSSLILSGYSYANWVGDPTNRRSTTGYCFYLGDSLISWCS
Sbjct: 1   MFGILRYIKGTLGHRLQFSFQSSLILSGYSYANWVGDPTNRRSTTGYCFYLGDSLISWCS 60

Query: 81  KKQSVVSRSSTESEYCALADATTDLLWLRWLLPDMGVPQQGPTLLHCDNRSAIQIAHNDV 140
           KKQSVVSRSSTESEYCALADATTDLLWLRWLL DMGVPQQGPTLLHCDNRSAIQIAHNDV
Sbjct: 61  KKQSVVSRSSTESEYCALADATTDLLWLRWLLADMGVPQQGPTLLHCDNRSAIQIAHNDV 120

Query: 141 FHERTKHIENGCHFIRHHLLSNTLLLQPVSTTGQPAYIFTKALPSTRFNQLLTKLKLTDT 200
           FHERTKHIENGCHFIRHHLLSNTLLLQPVSTTGQPAYIFTKALPSTRFNQLLTKLKLTDT
Sbjct: 121 FHERTKHIENGCHFIRHHLLSNTLLLQPVSTTGQPAYIFTKALPSTRFNQLLTKLKLTDT 180

Query: 201 LPP 204
           LPP
Sbjct: 181 LPP 183

[Close]

BLAST of Cmc08g0228231 vs. NCBI nr
Match: TYK26799.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 342.0 bits (876), Expect = 3.4e-90
Identity = 165/174 (94.83%), Postives = 167/174 (95.98%), Query Frame = 0


Query: 30  GTLGHRLQFSFQSSLILSGYSYANWVGDPTNRRSTTGYCFYLGDSLISWCSKKQSVVSRS 89
           GTLGHRL FSFQSSLILSGYSYANWVGDPTN+RSTTGYCFYLGDSLISW SKKQSVVSRS
Sbjct: 581 GTLGHRLPFSFQSSLILSGYSYANWVGDPTNQRSTTGYCFYLGDSLISWRSKKQSVVSRS 640

Query: 90  STESEYCALADATTDLLWLRWLLPDMGVPQQGPTLLHCDNRSAIQIAHNDVFHERTKHIE 149
           STESEYCALADATT+LLW RWLL DMGVPQQGPTLLHCDNRS IQIAHNDVFHERTKHIE
Sbjct: 641 STESEYCALADATTELLWFRWLLADMGVPQQGPTLLHCDNRSVIQIAHNDVFHERTKHIE 700

Query: 150 NGCHFIRHHLLSNTLLLQPVSTTGQPAYIFTKALPSTRFNQLLTKLKLTDTLPP 204
           NGCHFIRHHLLSNTLLLQPVSTTGQPA IFTKALPST FNQLLTKLKLTDTLPP
Sbjct: 701 NGCHFIRHHLLSNTLLLQPVSTTGQPADIFTKALPSTCFNQLLTKLKLTDTLPP 754

[Close]

BLAST of Cmc08g0228231 vs. NCBI nr
Match: KAA0057482.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 332.0 bits (850), Expect = 3.5e-87
Identity = 165/186 (88.71%), Postives = 171/186 (91.94%), Query Frame = 0


Query: 18  FTAMFGILRYIKGTLGHRLQFSFQSSLILSGYSYANWVGDPTNRRSTTGYCFYLGDSLIS 77
           FTA+  ILRYIKGTLGH LQFS QSSL+LSGYS A+WVGDPT+RRSTTGYCFYLGDSLIS
Sbjct: 590 FTAVLRILRYIKGTLGHGLQFSSQSSLVLSGYSDADWVGDPTDRRSTTGYCFYLGDSLIS 649

Query: 78  WCSKKQSVVSRSSTESEYCALADATTDLLWLRWLLPDMGVPQQGPTLLHCDNRSAIQIAH 137
           W SKKQSVVSRSSTESEY ALAD T +LLWLRWLL DMGVPQQGPTLL+CDNRSAIQIAH
Sbjct: 650 WRSKKQSVVSRSSTESEYRALADTTAELLWLRWLLADMGVPQQGPTLLYCDNRSAIQIAH 709

Query: 138 NDVFHERTKHIENGCHFIRHHLLSNTLLLQPVSTTGQPAYIFTKALPSTRFNQLLTKLKL 197
           NDVFHERTKHIEN CHFIRHHLLSNTLLLQPVSTT QPA IFTKALPSTRFNQL TKLKL
Sbjct: 710 NDVFHERTKHIENDCHFIRHHLLSNTLLLQPVSTTEQPADIFTKALPSTRFNQLRTKLKL 769

Query: 198 TDTLPP 204
           T TLPP
Sbjct: 770 TATLPP 775

[Close]

BLAST of Cmc08g0228231 vs. NCBI nr
Match: KAA0050073.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 328.9 bits (842), Expect = 3.0e-86
Identity = 161/186 (86.56%), Postives = 171/186 (91.94%), Query Frame = 0


Query: 18  FTAMFGILRYIKGTLGHRLQFSFQSSLILSGYSYANWVGDPTNRRSTTGYCFYLGDSLIS 77
           FTA+  ILRY+KGTLGH LQFS QSSL+LSGYS A+W GDPT+RRSTTGYCFYLGDSLIS
Sbjct: 408 FTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCFYLGDSLIS 467

Query: 78  WCSKKQSVVSRSSTESEYCALADATTDLLWLRWLLPDMGVPQQGPTLLHCDNRSAIQIAH 137
           W +KKQSVVSRSSTESEY ALADAT +LLWLRWLL DMGVPQQGPTLLHCDNRSAIQIAH
Sbjct: 468 WRNKKQSVVSRSSTESEYHALADATAELLWLRWLLADMGVPQQGPTLLHCDNRSAIQIAH 527

Query: 138 NDVFHERTKHIENGCHFIRHHLLSNTLLLQPVSTTGQPAYIFTKALPSTRFNQLLTKLKL 197
           NDVFHERTKHIEN CHFIRHHLLS+TLLLQPVSTT QPA IFTKALPSTRFNQ+ TKL+L
Sbjct: 528 NDVFHERTKHIENDCHFIRHHLLSHTLLLQPVSTTEQPADIFTKALPSTRFNQIRTKLRL 587

Query: 198 TDTLPP 204
           T TLPP
Sbjct: 588 TATLPP 593

[Close]

BLAST of Cmc08g0228231 vs. NCBI nr
Match: TYK30390.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 328.6 bits (841), Expect = 3.9e-86
Identity = 163/186 (87.63%), Postives = 169/186 (90.86%), Query Frame = 0


Query: 18  FTAMFGILRYIKGTLGHRLQFSFQSSLILSGYSYANWVGDPTNRRSTTGYCFYLGDSLIS 77
           FTA+  ILRYIKGTLGH LQFS QSSL+LSGYS A+W GDPT+RRSTTGYCFYLGDSLIS
Sbjct: 216 FTAVLRILRYIKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCFYLGDSLIS 275

Query: 78  WCSKKQSVVSRSSTESEYCALADATTDLLWLRWLLPDMGVPQQGPTLLHCDNRSAIQIAH 137
           W SKKQSVVSRSSTESEY ALAD T +LLWL WLL DMGVPQQGPTLL+CDNRSAIQIAH
Sbjct: 276 WRSKKQSVVSRSSTESEYRALADTTAELLWLHWLLADMGVPQQGPTLLYCDNRSAIQIAH 335

Query: 138 NDVFHERTKHIENGCHFIRHHLLSNTLLLQPVSTTGQPAYIFTKALPSTRFNQLLTKLKL 197
           NDVFHERTKHIEN CHFIRHHLLSNTLLLQPVSTT QPA IFTKALPSTRFNQL TKLKL
Sbjct: 336 NDVFHERTKHIENDCHFIRHHLLSNTLLLQPVSTTKQPADIFTKALPSTRFNQLRTKLKL 395

Query: 198 TDTLPP 204
           T TLPP
Sbjct: 396 TATLPP 401

[Close]

BLAST of Cmc08g0228231 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 136.3 bits (342), Expect = 3.7e-31
Identity = 74/179 (41.34%), Postives = 113/179 (63.13%), Query Frame = 0


Query: 24   ILRYIKGTLGHRLQF----SFQSSLILSGYSYANWVGDPTNRRSTTGYCFYLGD-SLISW 83
            +LRY+KGT+  +L F    +F++ +I  GY  ++W G   +R+STTGY F + D +LI W
Sbjct: 1224 VLRYLKGTIDMKLIFKKNLAFENKII--GYVDSDWAGSEIDRKSTTGYLFKMFDFNLICW 1283

Query: 84   CSKKQSVVSRSSTESEYCALADATTDLLWLRWLLPDMGVPQQGPTLLHCDNRSAIQIAHN 143
             +K+Q+ V+ SSTE+EY AL +A  + LWL++LL  + +  + P  ++ DN+  I IA+N
Sbjct: 1284 NTKRQNSVAASSTEAEYMALFEAVREALWLKFLLTSINIKLENPIKIYEDNQGCISIANN 1343

Query: 144  DVFHERTKHIENGCHFIRHHLLSNTLLLQPVSTTGQPAYIFTKALPSTRFNQLLTKLKL 198
               H+R KHI+   HF R  + +N + L+ + T  Q A IFTK LP+ RF +L  KL L
Sbjct: 1344 PSCHKRAKHIDIKYHFAREQVQNNVICLEYIPTENQLADIFTKPLPAARFVELRDKLGL 1400

[Close]

BLAST of Cmc08g0228231 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.4e-30
Identity = 75/183 (40.98%), Postives = 104/183 (56.83%), Query Frame = 0


Query: 20   AMFGILRYIKGTLGHRLQFSFQSSLILSGYSYANWVGDPTNRRSTTGYCFYLGDSLISWC 79
            A+  ILRY+ GT  H +     ++L L  YS A+W GD  +  ST GY  YLG   ISW 
Sbjct: 1283 ALKRILRYLAGTPNHGIFLKKGNTLSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWS 1342

Query: 80   SKKQSVVSRSSTESEYCALADATTDLLWLRWLLPDMGVPQQGPTLLHCDNRSAIQIAHND 139
            SKKQ  V RSSTE+EY ++A+ ++++ W+  LL ++G+    P +++CDN  A  +  N 
Sbjct: 1343 SKKQKGVVRSSTEAEYRSVANTSSEMQWICSLLTELGIRLTRPPVIYCDNVGATYLCANP 1402

Query: 140  VFHERTKHIENGCHFIRHHLLSNTLLLQPVSTTGQPAYIFTKALPSTRFNQLLTKLKLTD 199
            VFH R KHI    HFIR+ + S  L +  VST  Q A   TK L  T F    +K+ +T 
Sbjct: 1403 VFHSRMKHIAIDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRTAFQNFASKIGVTR 1462

Query: 200  TLP 203
              P
Sbjct: 1463 VPP 1465

[Close]

BLAST of Cmc08g0228231 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 2.7e-29
Identity = 73/185 (39.46%), Postives = 102/185 (55.14%), Query Frame = 0


Query: 18   FTAMFGILRYIKGTLGHRLQFSFQSSLILSGYSYANWVGDPTNRRSTTGYCFYLGDSLIS 77
            + A+  +LRY+ GT  H +     ++L L  YS A+W GD  +  ST GY  YLG   IS
Sbjct: 1264 WNALKRVLRYLAGTPDHGIFLKKGNTLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPIS 1323

Query: 78   WCSKKQSVVSRSSTESEYCALADATTDLLWLRWLLPDMGVPQQGPTLLHCDNRSAIQIAH 137
            W SKKQ  V RSSTE+EY ++A+ +++L W+  LL ++G+    P +++CDN  A  +  
Sbjct: 1324 WSSKKQKGVVRSSTEAEYRSVANTSSELQWICSLLTELGIQLSHPPVIYCDNVGATYLCA 1383

Query: 138  NDVFHERTKHIENGCHFIRHHLLSNTLLLQPVSTTGQPAYIFTKALPSTRFNQLLTKLKL 197
            N VFH R KHI    HFIR+ + S  L +  VST  Q A   TK L    F     K+ +
Sbjct: 1384 NPVFHSRMKHIALDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRVAFQNFSRKIGV 1443

Query: 198  TDTLP 203
                P
Sbjct: 1444 IKVPP 1448

[Close]

BLAST of Cmc08g0228231 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.1e-27
Identity = 66/165 (40.00%), Postives = 102/165 (61.82%), Query Frame = 0


Query: 24   ILRYIKGTLGHRLQFSFQSSLILSGYSYANWVGDPTNRRSTTGYCFYLGDSLISWCSKKQ 83
            ILRY++GT G  L F   S  IL GY+ A+  GD  NR+S+TGY F      ISW SK Q
Sbjct: 1154 ILRYLRGTTGDCLCFG-GSDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQ 1213

Query: 84   SVVSRSSTESEYCALADATTDLLWLRWLLPDMGVPQQGPTLLHCDNRSAIQIAHNDVFHE 143
              V+ S+TE+EY A  +   +++WL+  L ++G+ Q+   +++CD++SAI ++ N ++H 
Sbjct: 1214 KCVALSTTEAEYIAATETGKEMIWLKRFLQELGLHQK-EYVVYCDSQSAIDLSKNSMYHA 1273

Query: 144  RTKHIENGCHFIRHHLLSNTLLLQPVSTTGQPAYIFTKALPSTRF 189
            RTKHI+   H+IR  +   +L +  +ST   PA + TK +P  +F
Sbjct: 1274 RTKHIDVRYHWIREMVDDESLKVLKISTNENPADMLTKVVPRNKF 1316

[Close]

BLAST of Cmc08g0228231 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 5.8e-16
Identity = 43/94 (45.74%), Postives = 61/94 (64.89%), Query Frame = 0


Query: 15  PLIFTAMFGILRYIKGTLGHRLQFSFQSSLILSGYSYANWVGDPTNRRSTTGYCFYLGDS 74
           P  + A+  +LRY++ T  + L+F+   +  L GYS A+W GD  +RRST+GY F L   
Sbjct: 40  PTHWQALKRVLRYLQSTQTYGLEFTRAGTAKLVGYSDADWAGDVESRRSTSGYLFKLNGG 99

Query: 75  LISWCSKKQSVVSRSSTESEYCALADATTDLLWL 109
            +SW SKKQ  V+ SSTE EY AL++AT + +WL
Sbjct: 100 CVSWRSKKQRTVALSSTEDEYMALSEATQEAVWL 133

[Close]

BLAST of Cmc08g0228231 vs. ExPASy TrEMBL
Match: A0A5A7TD11 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G003530 PE=4 SV=1)

HSP 1 Score: 378.6 bits (971), Expect = 1.6e-101
Identity = 182/183 (99.45%), Postives = 182/183 (99.45%), Query Frame = 0


Query: 21  MFGILRYIKGTLGHRLQFSFQSSLILSGYSYANWVGDPTNRRSTTGYCFYLGDSLISWCS 80
           MFGILRYIKGTLGHRLQFSFQSSLILSGYSYANWVGDPTNRRSTTGYCFYLGDSLISWCS
Sbjct: 1   MFGILRYIKGTLGHRLQFSFQSSLILSGYSYANWVGDPTNRRSTTGYCFYLGDSLISWCS 60

Query: 81  KKQSVVSRSSTESEYCALADATTDLLWLRWLLPDMGVPQQGPTLLHCDNRSAIQIAHNDV 140
           KKQSVVSRSSTESEYCALADATTDLLWLRWLL DMGVPQQGPTLLHCDNRSAIQIAHNDV
Sbjct: 61  KKQSVVSRSSTESEYCALADATTDLLWLRWLLADMGVPQQGPTLLHCDNRSAIQIAHNDV 120

Query: 141 FHERTKHIENGCHFIRHHLLSNTLLLQPVSTTGQPAYIFTKALPSTRFNQLLTKLKLTDT 200
           FHERTKHIENGCHFIRHHLLSNTLLLQPVSTTGQPAYIFTKALPSTRFNQLLTKLKLTDT
Sbjct: 121 FHERTKHIENGCHFIRHHLLSNTLLLQPVSTTGQPAYIFTKALPSTRFNQLLTKLKLTDT 180

Query: 201 LPP 204
           LPP
Sbjct: 181 LPP 183

[Close]

BLAST of Cmc08g0228231 vs. ExPASy TrEMBL
Match: A0A5D3DTM1 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold124G001120 PE=4 SV=1)

HSP 1 Score: 342.0 bits (876), Expect = 1.7e-90
Identity = 165/174 (94.83%), Postives = 167/174 (95.98%), Query Frame = 0


Query: 30  GTLGHRLQFSFQSSLILSGYSYANWVGDPTNRRSTTGYCFYLGDSLISWCSKKQSVVSRS 89
           GTLGHRL FSFQSSLILSGYSYANWVGDPTN+RSTTGYCFYLGDSLISW SKKQSVVSRS
Sbjct: 581 GTLGHRLPFSFQSSLILSGYSYANWVGDPTNQRSTTGYCFYLGDSLISWRSKKQSVVSRS 640

Query: 90  STESEYCALADATTDLLWLRWLLPDMGVPQQGPTLLHCDNRSAIQIAHNDVFHERTKHIE 149
           STESEYCALADATT+LLW RWLL DMGVPQQGPTLLHCDNRS IQIAHNDVFHERTKHIE
Sbjct: 641 STESEYCALADATTELLWFRWLLADMGVPQQGPTLLHCDNRSVIQIAHNDVFHERTKHIE 700

Query: 150 NGCHFIRHHLLSNTLLLQPVSTTGQPAYIFTKALPSTRFNQLLTKLKLTDTLPP 204
           NGCHFIRHHLLSNTLLLQPVSTTGQPA IFTKALPST FNQLLTKLKLTDTLPP
Sbjct: 701 NGCHFIRHHLLSNTLLLQPVSTTGQPADIFTKALPSTCFNQLLTKLKLTDTLPP 754

[Close]

BLAST of Cmc08g0228231 vs. ExPASy TrEMBL
Match: A0A5A7UNP5 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold280G003640 PE=4 SV=1)

HSP 1 Score: 332.0 bits (850), Expect = 1.7e-87
Identity = 165/186 (88.71%), Postives = 171/186 (91.94%), Query Frame = 0


Query: 18  FTAMFGILRYIKGTLGHRLQFSFQSSLILSGYSYANWVGDPTNRRSTTGYCFYLGDSLIS 77
           FTA+  ILRYIKGTLGH LQFS QSSL+LSGYS A+WVGDPT+RRSTTGYCFYLGDSLIS
Sbjct: 590 FTAVLRILRYIKGTLGHGLQFSSQSSLVLSGYSDADWVGDPTDRRSTTGYCFYLGDSLIS 649

Query: 78  WCSKKQSVVSRSSTESEYCALADATTDLLWLRWLLPDMGVPQQGPTLLHCDNRSAIQIAH 137
           W SKKQSVVSRSSTESEY ALAD T +LLWLRWLL DMGVPQQGPTLL+CDNRSAIQIAH
Sbjct: 650 WRSKKQSVVSRSSTESEYRALADTTAELLWLRWLLADMGVPQQGPTLLYCDNRSAIQIAH 709

Query: 138 NDVFHERTKHIENGCHFIRHHLLSNTLLLQPVSTTGQPAYIFTKALPSTRFNQLLTKLKL 197
           NDVFHERTKHIEN CHFIRHHLLSNTLLLQPVSTT QPA IFTKALPSTRFNQL TKLKL
Sbjct: 710 NDVFHERTKHIENDCHFIRHHLLSNTLLLQPVSTTEQPADIFTKALPSTRFNQLRTKLKL 769

Query: 198 TDTLPP 204
           T TLPP
Sbjct: 770 TATLPP 775

[Close]

BLAST of Cmc08g0228231 vs. ExPASy TrEMBL
Match: A0A5A7U2E5 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00550 PE=4 SV=1)

HSP 1 Score: 328.9 bits (842), Expect = 1.5e-86
Identity = 161/186 (86.56%), Postives = 171/186 (91.94%), Query Frame = 0


Query: 18  FTAMFGILRYIKGTLGHRLQFSFQSSLILSGYSYANWVGDPTNRRSTTGYCFYLGDSLIS 77
           FTA+  ILRY+KGTLGH LQFS QSSL+LSGYS A+W GDPT+RRSTTGYCFYLGDSLIS
Sbjct: 408 FTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCFYLGDSLIS 467

Query: 78  WCSKKQSVVSRSSTESEYCALADATTDLLWLRWLLPDMGVPQQGPTLLHCDNRSAIQIAH 137
           W +KKQSVVSRSSTESEY ALADAT +LLWLRWLL DMGVPQQGPTLLHCDNRSAIQIAH
Sbjct: 468 WRNKKQSVVSRSSTESEYHALADATAELLWLRWLLADMGVPQQGPTLLHCDNRSAIQIAH 527

Query: 138 NDVFHERTKHIENGCHFIRHHLLSNTLLLQPVSTTGQPAYIFTKALPSTRFNQLLTKLKL 197
           NDVFHERTKHIEN CHFIRHHLLS+TLLLQPVSTT QPA IFTKALPSTRFNQ+ TKL+L
Sbjct: 528 NDVFHERTKHIENDCHFIRHHLLSHTLLLQPVSTTEQPADIFTKALPSTRFNQIRTKLRL 587

Query: 198 TDTLPP 204
           T TLPP
Sbjct: 588 TATLPP 593

[Close]

BLAST of Cmc08g0228231 vs. ExPASy TrEMBL
Match: A0A5A7SLT8 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G004960 PE=4 SV=1)

HSP 1 Score: 328.6 bits (841), Expect = 1.9e-86
Identity = 163/186 (87.63%), Postives = 169/186 (90.86%), Query Frame = 0


Query: 18   FTAMFGILRYIKGTLGHRLQFSFQSSLILSGYSYANWVGDPTNRRSTTGYCFYLGDSLIS 77
            FTA+  ILRYIKGTLGH LQFS QSSL+LSGYS A+W GDPT+RRSTTGYCFYLGDSLIS
Sbjct: 1109 FTAVLRILRYIKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCFYLGDSLIS 1168

Query: 78   WCSKKQSVVSRSSTESEYCALADATTDLLWLRWLLPDMGVPQQGPTLLHCDNRSAIQIAH 137
            W SKKQSVVSRSSTESEY ALAD T +LLWL WLL DMGVPQQGPTLL+CDNRSAIQIAH
Sbjct: 1169 WRSKKQSVVSRSSTESEYRALADTTAELLWLHWLLADMGVPQQGPTLLYCDNRSAIQIAH 1228

Query: 138  NDVFHERTKHIENGCHFIRHHLLSNTLLLQPVSTTGQPAYIFTKALPSTRFNQLLTKLKL 197
            NDVFHERTKHIEN CHFIRHHLLSNTLLLQPVSTT QPA IFTKALPSTRFNQL TKLKL
Sbjct: 1229 NDVFHERTKHIENDCHFIRHHLLSNTLLLQPVSTTKQPADIFTKALPSTRFNQLRTKLKL 1288

Query: 198  TDTLPP 204
            T TLPP
Sbjct: 1289 TATLPP 1294

[Close]

BLAST of Cmc08g0228231 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 144.8 bits (364), Expect = 7.5e-35
Identity = 73/137 (53.28%), Postives = 94/137 (68.61%), Query Frame = 0


Query: 20  AMFGILRYIKGTLGHRLQFSFQSSLILSGYSYANWVGDPTNRRSTTGYCFYLGDSLISWC 79
           A+  IL YIKGT+G  L +S Q+ + L  +S A++      RRST GYC +LG SLISW 
Sbjct: 416 AVMKILHYIKGTVGQGLFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWK 475

Query: 80  SKKQSVVSRSSTESEYCALADATTDLLWLRWLLPDMGVPQQGPTLLHCDNRSAIQIAHND 139
           SKKQ VVS+SS E+EY AL+ AT +++WL     ++ +P   PTLL CDN +AI IA N 
Sbjct: 476 SKKQQVVSKSSAEAEYRALSFATDEMMWLAQFFRELQLPLSKPTLLFCDNTAAIHIATNA 535

Query: 140 VFHERTKHIENGCHFIR 157
           VFHERTKHIE+ CH +R
Sbjct: 536 VFHERTKHIESDCHSVR 552

[Close]

BLAST of Cmc08g0228231 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 85.5 bits (210), Expect = 5.4e-17
Identity = 41/90 (45.56%), Postives = 58/90 (64.44%), Query Frame = 0


Query: 18  FTAMFGILRYIKGTLGHRLQFSFQSSLILSGYSYANWVGDPTNRRSTTGYCFYLGDSLIS 77
           F  +  +LRY+KGT+ H L     S L +  +  ++W G  + RRSTTG+C +LG ++IS
Sbjct: 136 FDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIIS 195

Query: 78  WCSKKQSVVSRSSTESEYCALADATTDLLW 108
           W +K+Q  VSRSSTE+EY ALA    +L W
Sbjct: 196 WSAKRQPTVSRSSTETEYRALALTAAELTW 225

[Close]

BLAST of Cmc08g0228231 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 47.8 bits (112), Expect = 1.2e-05
Identity = 20/49 (40.82%), Postives = 31/49 (63.27%), Query Frame = 0


Query: 20 AMFGILRYIKGTLGHRLQFSFQSSLILSGYSYANWVGDPTNRRSTTGYC 69
          A++ +L Y+KGT+G  L +S  S L L  ++ ++W   P  RRS TG+C
Sbjct: 31 AVYKVLHYVKGTVGQGLFYSATSDLQLKAFADSDWASCPDTRRSVTGFC 79

The following BLAST results are available for this feature:

BLAST of Cmc08g0228231 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0041342.1	3.3e-101	99.45	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]
TYK26799.1	3.4e-90	94.83	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]
KAA0057482.1	3.5e-87	88.71	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]
KAA0050073.1	3.0e-86	86.56	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]
TYK30390.1	3.9e-86	87.63	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc08g0228231 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04146	3.7e-31	41.34	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q94HW2	1.4e-30	40.98	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	2.7e-29	39.46	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P10978	1.1e-27	40.00	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P0CV72	5.8e-16	45.74	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]

BLAST of Cmc08g0228231 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TD11	1.6e-101	99.45	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A5D3DTM1	1.7e-90	94.83	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5A7UNP5	1.7e-87	88.71	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A5A7U2E5	1.5e-86	86.56	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A5A7SLT8	1.9e-86	87.63	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]

BLAST of Cmc08g0228231 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	7.5e-35	53.28	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	5.4e-17	45.56	DNA/RNA polymerases superfamily protein	[more]
ATMG00240.1	1.2e-05	40.82	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 66..195
None	No IPR available	PANTHER	PTHR11439:SF355	CYSTEINE-RICH RLK (RECEPTOR-LIKE PROTEIN KINASE) 8	coord: 66..195
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 48..185 e-value: 2.33367E-75 score: 221.188
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 41..149

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0228231.1	Cmc08g0228231.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding