Cmc08g0227921 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0227921
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Ty1-copia retrotransposon protein
Location	CMiso1.1chr08: 21359990 .. 21360454 (-)
RNA-Seq Expression	Cmc08g0227921
Synteny	Cmc08g0227921

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTTTGAAATTTAAGGCAGAAATTGAAAATCAATTAGGTAAAAGGATAAAAAGATTAAGATCAAATAGAGGTGGTGAATATAGTGATAAATCTCTTGAGGAATTTTGTGAATCAAATGGTATTACTCATGAATTTACTACCCCATATTCACCTCAACAAAATTGTATAGTGGAGTGGAAAAATATAACCCTTAAGAAAATGATGAATGCTATGTTATTAAGTTATGGATTATCTAATAATATGTGGGGGGAAGCTGTGTTGTCTGCATGTTTTCTTTTTAACAATGTTCCTCACAGAAAACTGGATAAAACTTCTCACGAACTTTGGAAAGAATATGCACCTAATCGTTCTTACTTAAGGGTCAAAGGATGCTTGGCTAAGGTATCACATCCTGCATTGAAGAAATCTATAGTAGGGTCTAAAACCTTTGACTATATATTTTATTGGGTATGCTCAAAATAG

mRNA sequence

ATGTTTTTGAAATTTAAGGCAGAAATTGAAAATCAATTAGGTAAAAGGATAAAAAGATTAAGATCAAATAGAGGTGGTGAATATAGTGATAAATCTCTTGAGGAATTTTGTGAATCAAATGGTATTACTCATGAATTTACTACCCCATATTCACCTCAACAAAATTGTATAGTGGAGTGGAAAAATATAACCCTTAAGAAAATGATGAATGCTATGTTATTAAGTTATGGATTATCTAATAATATGTGGGGGGAAGCTGTGTTGTCTGCATGTTTTCTTTTTAACAATGTTCCTCACAGAAAACTGGATAAAACTTCTCACGAACTTTGGAAAGAATATGCACCTAATCGTTCTTACTTAAGGGTCAAAGGATGCTTGGCTAAGGTATCACATCCTGCATTGAAGAAATCTATAGTAGGGTCTAAAACCTTTGACTATATATTTTATTGGGTATGCTCAAAATAG

Coding sequence (CDS)

ATGTTTTTGAAATTTAAGGCAGAAATTGAAAATCAATTAGGTAAAAGGATAAAAAGATTAAGATCAAATAGAGGTGGTGAATATAGTGATAAATCTCTTGAGGAATTTTGTGAATCAAATGGTATTACTCATGAATTTACTACCCCATATTCACCTCAACAAAATTGTATAGTGGAGTGGAAAAATATAACCCTTAAGAAAATGATGAATGCTATGTTATTAAGTTATGGATTATCTAATAATATGTGGGGGGAAGCTGTGTTGTCTGCATGTTTTCTTTTTAACAATGTTCCTCACAGAAAACTGGATAAAACTTCTCACGAACTTTGGAAAGAATATGCACCTAATCGTTCTTACTTAAGGGTCAAAGGATGCTTGGCTAAGGTATCACATCCTGCATTGAAGAAATCTATAGTAGGGTCTAAAACCTTTGACTATATATTTTATTGGGTATGCTCAAAATAG

Protein sequence

MFLKFKAEIENQLGKRIKRLRSNRGGEYSDKSLEEFCESNGITHEFTTPYSPQQNCIVEWKNITLKKMMNAMLLSYGLSNNMWGEAVLSACFLFNNVPHRKLDKTSHELWKEYAPNRSYLRVKGCLAKVSHPALKKSIVGSKTFDYIFYWVCSK

Homology

[Close]

BLAST of Cmc08g0227921 vs. NCBI nr
Match: KAA0044881.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 240.0 bits (611), Expect = 1.4e-59
Identity = 116/148 (78.38%), Postives = 130/148 (87.84%), Query Frame = 0


Query: 1   MFLKFKAEIENQLGKRIKRLRSNRGGEYSDKSLEEFCESNGITHEFTTPYSPQQNCIVEW 60
           MFLKFKAE ENQLGKRIKRLRS+RGGEYSDK+L+EFCESNGI HEFT  YSPQQN I E 
Sbjct: 373 MFLKFKAESENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTASYSPQQNGIAER 432

Query: 61  KNITLKKMMNAMLLSYGLSNNMWGEAVLSACFLFNNVPHRKLDKTSHELWKEYAPNRSYL 120
           KN TLK+MMNAMLLS+GLS+NMWGEAVLSACF+ N +PH++LDKT +ELWK +APN SYL
Sbjct: 433 KNRTLKEMMNAMLLSFGLSDNMWGEAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYL 492

Query: 121 RVKGCLAKVSHPALKKSIVGSKTFDYIF 149
           +V GCLAKV  PALKK+ VGSKTFD IF
Sbjct: 493 KVSGCLAKVPFPALKKTTVGSKTFDCIF 520

[Close]

BLAST of Cmc08g0227921 vs. NCBI nr
Match: KAA0032318.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 238.4 bits (607), Expect = 4.0e-59
Identity = 116/148 (78.38%), Postives = 129/148 (87.16%), Query Frame = 0


Query: 1   MFLKFKAEIENQLGKRIKRLRSNRGGEYSDKSLEEFCESNGITHEFTTPYSPQQNCIVEW 60
           MF+KFKAE ENQLGKRIKRLRS+RGGEYSDK+L+EFCESNGI HEFT PYSPQQN I E 
Sbjct: 708 MFIKFKAESENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAER 767

Query: 61  KNITLKKMMNAMLLSYGLSNNMWGEAVLSACFLFNNVPHRKLDKTSHELWKEYAPNRSYL 120
           KN TLK+MMNAMLLS GLS+NMWGEAVLSACF+ N +PH++LDKT +ELWK YAPN SYL
Sbjct: 768 KNRTLKEMMNAMLLSSGLSDNMWGEAVLSACFILNRIPHKRLDKTPYELWKGYAPNLSYL 827

Query: 121 RVKGCLAKVSHPALKKSIVGSKTFDYIF 149
           +V GCLAKV  PALKK+ VG KTFD IF
Sbjct: 828 KVWGCLAKVPLPALKKTTVGPKTFDCIF 855

[Close]

BLAST of Cmc08g0227921 vs. NCBI nr
Match: KAA0043346.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 236.9 bits (603), Expect = 1.2e-58
Identity = 115/148 (77.70%), Postives = 130/148 (87.84%), Query Frame = 0


Query: 1   MFLKFKAEIENQLGKRIKRLRSNRGGEYSDKSLEEFCESNGITHEFTTPYSPQQNCIVEW 60
           MF+KFKAE ENQLGKRIKRLRS+RGGEYSDK+L+EFCESNGI HEFT PYSPQQN I E 
Sbjct: 545 MFVKFKAESENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAER 604

Query: 61  KNITLKKMMNAMLLSYGLSNNMWGEAVLSACFLFNNVPHRKLDKTSHELWKEYAPNRSYL 120
           KN TLK+MMNAMLLS GLS+NMWGEAVLSACF+ N +PH++LDKT +ELWK +APN SYL
Sbjct: 605 KNRTLKEMMNAMLLSSGLSDNMWGEAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYL 664

Query: 121 RVKGCLAKVSHPALKKSIVGSKTFDYIF 149
           +V GCLAKV  PALKK++VG KTFD IF
Sbjct: 665 KVWGCLAKVPLPALKKTMVGPKTFDCIF 692

[Close]

BLAST of Cmc08g0227921 vs. NCBI nr
Match: KAA0056761.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 236.5 bits (602), Expect = 1.5e-58
Identity = 115/148 (77.70%), Postives = 129/148 (87.16%), Query Frame = 0


Query: 1   MFLKFKAEIENQLGKRIKRLRSNRGGEYSDKSLEEFCESNGITHEFTTPYSPQQNCIVEW 60
           MF+KFKAE ENQLGKRIKRLRS+RGGEYSDK+L+EFCESNGI HEFT PYSPQQN I E 
Sbjct: 571 MFIKFKAESENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAER 630

Query: 61  KNITLKKMMNAMLLSYGLSNNMWGEAVLSACFLFNNVPHRKLDKTSHELWKEYAPNRSYL 120
           KN TLK+MMNAMLLS GLS+NMWGEAVLSACF+ N +PH++LDKT +ELWK +APN SYL
Sbjct: 631 KNRTLKEMMNAMLLSSGLSDNMWGEAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYL 690

Query: 121 RVKGCLAKVSHPALKKSIVGSKTFDYIF 149
           +V GCLAKV  PALKK+ VG KTFD IF
Sbjct: 691 KVWGCLAKVPLPALKKTTVGPKTFDCIF 718

[Close]

BLAST of Cmc08g0227921 vs. NCBI nr
Match: TYK06518.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 236.5 bits (602), Expect = 1.5e-58
Identity = 115/148 (77.70%), Postives = 129/148 (87.16%), Query Frame = 0


Query: 1   MFLKFKAEIENQLGKRIKRLRSNRGGEYSDKSLEEFCESNGITHEFTTPYSPQQNCIVEW 60
           MF+KFKAE ENQLGKRIKRLRS+RGGEYSDK+L+EFCESNGI HEFT PYSPQQN I E 
Sbjct: 571 MFIKFKAESENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAER 630

Query: 61  KNITLKKMMNAMLLSYGLSNNMWGEAVLSACFLFNNVPHRKLDKTSHELWKEYAPNRSYL 120
           KN TLK+MMNAMLLS GLS+NMWGEAVLSACF+ N +PH++LDKT +ELWK +APN SYL
Sbjct: 631 KNRTLKEMMNAMLLSSGLSDNMWGEAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYL 690

Query: 121 RVKGCLAKVSHPALKKSIVGSKTFDYIF 149
           +V GCLAKV  PALKK+ VG KTFD IF
Sbjct: 691 KVWGCLAKVPLPALKKTTVGPKTFDCIF 718

[Close]

BLAST of Cmc08g0227921 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.8e-22
Identity = 56/149 (37.58%), Postives = 86/149 (57.72%), Query Frame = 0


Query: 1   MFLKFKAEIENQLGKRIKRLRSNRGGEYSDKSLEEFCESNGITHEFTTPYSPQQNCIVEW 60
           +F KF A +E + G+++KRLRS+ GGEY+ +  EE+C S+GI HE T P +PQ N + E 
Sbjct: 528 VFQKFHALVERETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQHNGVAER 587

Query: 61  KNITLKKMMNAMLLSYGLSNNMWGEAVLSACFLFNNVPHRKLD-KTSHELWKEYAPNRSY 120
            N T+ + + +ML    L  + WGEAV +AC+L N  P   L  +    +W     + S+
Sbjct: 588 MNRTIVEKVRSMLRMAKLPKSFWGEAVQTACYLINRSPSVPLAFEIPERVWTNKEVSYSH 647

Query: 121 LRVKGCLAKVSHPALKKSIVGSKTFDYIF 149
           L+V GC A    P  +++ +  K+   IF
Sbjct: 648 LKVFGCRAFAHVPKEQRTKLDDKSIPCIF 676

[Close]

BLAST of Cmc08g0227921 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 83.2 bits (204), Expect = 2.8e-15
Identity = 50/151 (33.11%), Postives = 73/151 (48.34%), Query Frame = 0


Query: 1   MFLKFKAEIENQLGKRIKRLRSNRGGEYSDKSLEEFCESNGITHEFTTPYSPQQNCIVEW 60
           MF  F A+ E     ++  L  + G EY    + +FC   GI++  T P++PQ N + E 
Sbjct: 528 MFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEMRQFCVKKGISYHLTVPHTPQLNGVSER 587

Query: 61  KNITLKKMMNAMLLSYGLSNNMWGEAVLSACFLFNNVPHRKL---DKTSHELWKEYAPNR 120
              T+ +    M+    L  + WGEAVL+A +L N +P R L    KT +E+W    P  
Sbjct: 588 MIRTITEKARTMVSGAKLDKSFWGEAVLTATYLINRIPSRALVDSSKTPYEMWHNKKPYL 647

Query: 121 SYLRVKGCLAKVSHPALKKSIVGSKTFDYIF 149
            +LRV G    V H   K+     K+F  IF
Sbjct: 648 KHLRVFGATVYV-HIKNKQGKFDDKSFKSIF 677

[Close]

BLAST of Cmc08g0227921 vs. ExPASy Swiss-Prot
Match: Q12491 (Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY2B-B PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.9e-07
Identity = 33/108 (30.56%), Postives = 58/108 (53.70%), Query Frame = 0


Query: 1   MFLKFKAEIENQLGKRIKRLRSNRGGEYSDKSLEEFCESNGITHEFTTPYSPQQNCIVEW 60
           +F    A I+NQ   R+  ++ +RG EY++K+L +F  + GIT  +TT    + + + E 
Sbjct: 710 VFTSILAFIKNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGITACYTTTADSRAHGVAER 769

Query: 61  KNITLKKMMNAMLLSYGLSNNMWGEAVLSACFLFNNVPHRKLDKTSHE 109
            N TL      +L   GL N++W  AV  +  + N++   K DK++ +
Sbjct: 770 LNRTLLNDCRTLLHCSGLPNHLWFSAVEFSTIIRNSLVSPKNDKSARQ 817

[Close]

BLAST of Cmc08g0227921 vs. ExPASy Swiss-Prot
Match: P25384 (Transposon Ty2-C Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY2B-C PE=3 SV=2)

HSP 1 Score: 56.6 bits (135), Expect = 2.9e-07
Identity = 33/108 (30.56%), Postives = 58/108 (53.70%), Query Frame = 0


Query: 1   MFLKFKAEIENQLGKRIKRLRSNRGGEYSDKSLEEFCESNGITHEFTTPYSPQQNCIVEW 60
           +F    A I+NQ   R+  ++ +RG EY++K+L +F  + GIT  +TT    + + + E 
Sbjct: 710 VFTSILAFIKNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGITACYTTTADSRAHGVAER 769

Query: 61  KNITLKKMMNAMLLSYGLSNNMWGEAVLSACFLFNNVPHRKLDKTSHE 109
            N TL      +L   GL N++W  AV  +  + N++   K DK++ +
Sbjct: 770 LNRTLLNDCRTLLHCSGLPNHLWFSAVEFSTIIRNSLVSPKNDKSARQ 817

[Close]

BLAST of Cmc08g0227921 vs. ExPASy Swiss-Prot
Match: Q12472 (Transposon Ty2-DR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY2B-DR1 PE=1 SV=3)

HSP 1 Score: 56.6 bits (135), Expect = 2.9e-07
Identity = 33/108 (30.56%), Postives = 58/108 (53.70%), Query Frame = 0


Query: 1   MFLKFKAEIENQLGKRIKRLRSNRGGEYSDKSLEEFCESNGITHEFTTPYSPQQNCIVEW 60
           +F    A I+NQ   R+  ++ +RG EY++K+L +F  + GIT  +TT    + + + E 
Sbjct: 710 VFTSILAFIKNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGITACYTTTADSRAHGVAER 769

Query: 61  KNITLKKMMNAMLLSYGLSNNMWGEAVLSACFLFNNVPHRKLDKTSHE 109
            N TL      +L   GL N++W  AV  +  + N++   K DK++ +
Sbjct: 770 LNRTLLNDCRTLLHCSGLPNHLWFSAVEFSTIIRNSLVSPKNDKSARQ 817

[Close]

BLAST of Cmc08g0227921 vs. ExPASy TrEMBL
Match: A0A5A7TTN4 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G001740 PE=4 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 6.7e-60
Identity = 116/148 (78.38%), Postives = 130/148 (87.84%), Query Frame = 0


Query: 1   MFLKFKAEIENQLGKRIKRLRSNRGGEYSDKSLEEFCESNGITHEFTTPYSPQQNCIVEW 60
           MFLKFKAE ENQLGKRIKRLRS+RGGEYSDK+L+EFCESNGI HEFT  YSPQQN I E 
Sbjct: 373 MFLKFKAESENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTASYSPQQNGIAER 432

Query: 61  KNITLKKMMNAMLLSYGLSNNMWGEAVLSACFLFNNVPHRKLDKTSHELWKEYAPNRSYL 120
           KN TLK+MMNAMLLS+GLS+NMWGEAVLSACF+ N +PH++LDKT +ELWK +APN SYL
Sbjct: 433 KNRTLKEMMNAMLLSFGLSDNMWGEAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYL 492

Query: 121 RVKGCLAKVSHPALKKSIVGSKTFDYIF 149
           +V GCLAKV  PALKK+ VGSKTFD IF
Sbjct: 493 KVSGCLAKVPFPALKKTTVGSKTFDCIF 520

[Close]

BLAST of Cmc08g0227921 vs. ExPASy TrEMBL
Match: A0A5A7SP23 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G001760 PE=4 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 2.0e-59
Identity = 116/148 (78.38%), Postives = 129/148 (87.16%), Query Frame = 0


Query: 1   MFLKFKAEIENQLGKRIKRLRSNRGGEYSDKSLEEFCESNGITHEFTTPYSPQQNCIVEW 60
           MF+KFKAE ENQLGKRIKRLRS+RGGEYSDK+L+EFCESNGI HEFT PYSPQQN I E 
Sbjct: 708 MFIKFKAESENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAER 767

Query: 61  KNITLKKMMNAMLLSYGLSNNMWGEAVLSACFLFNNVPHRKLDKTSHELWKEYAPNRSYL 120
           KN TLK+MMNAMLLS GLS+NMWGEAVLSACF+ N +PH++LDKT +ELWK YAPN SYL
Sbjct: 768 KNRTLKEMMNAMLLSSGLSDNMWGEAVLSACFILNRIPHKRLDKTPYELWKGYAPNLSYL 827

Query: 121 RVKGCLAKVSHPALKKSIVGSKTFDYIF 149
           +V GCLAKV  PALKK+ VG KTFD IF
Sbjct: 828 KVWGCLAKVPLPALKKTTVGPKTFDCIF 855

[Close]

BLAST of Cmc08g0227921 vs. ExPASy TrEMBL
Match: A0A5A7TMS2 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold110G002600 PE=4 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 5.7e-59
Identity = 115/148 (77.70%), Postives = 130/148 (87.84%), Query Frame = 0


Query: 1   MFLKFKAEIENQLGKRIKRLRSNRGGEYSDKSLEEFCESNGITHEFTTPYSPQQNCIVEW 60
           MF+KFKAE ENQLGKRIKRLRS+RGGEYSDK+L+EFCESNGI HEFT PYSPQQN I E 
Sbjct: 545 MFVKFKAESENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAER 604

Query: 61  KNITLKKMMNAMLLSYGLSNNMWGEAVLSACFLFNNVPHRKLDKTSHELWKEYAPNRSYL 120
           KN TLK+MMNAMLLS GLS+NMWGEAVLSACF+ N +PH++LDKT +ELWK +APN SYL
Sbjct: 605 KNRTLKEMMNAMLLSSGLSDNMWGEAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYL 664

Query: 121 RVKGCLAKVSHPALKKSIVGSKTFDYIF 149
           +V GCLAKV  PALKK++VG KTFD IF
Sbjct: 665 KVWGCLAKVPLPALKKTMVGPKTFDCIF 692

[Close]

BLAST of Cmc08g0227921 vs. ExPASy TrEMBL
Match: A0A5D3DJE2 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G004120 PE=4 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 7.4e-59
Identity = 115/148 (77.70%), Postives = 129/148 (87.16%), Query Frame = 0


Query: 1   MFLKFKAEIENQLGKRIKRLRSNRGGEYSDKSLEEFCESNGITHEFTTPYSPQQNCIVEW 60
           MF+KFKAE ENQLGKRIKRLRS+RGGEYSDK+L+EFCESNGI HEFT PYSPQQN I E 
Sbjct: 467 MFIKFKAESENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAER 526

Query: 61  KNITLKKMMNAMLLSYGLSNNMWGEAVLSACFLFNNVPHRKLDKTSHELWKEYAPNRSYL 120
           KN TLK+MMNAMLLS GLS+NMWGEAVLSACF+ N +PH++LDKT +ELWK +APN SYL
Sbjct: 527 KNRTLKEMMNAMLLSSGLSDNMWGEAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYL 586

Query: 121 RVKGCLAKVSHPALKKSIVGSKTFDYIF 149
           +V GCLAKV  PALKK+ VG KTFD IF
Sbjct: 587 KVWGCLAKVPLPALKKTTVGPKTFDCIF 614

[Close]

BLAST of Cmc08g0227921 vs. ExPASy TrEMBL
Match: A0A5D3DSQ3 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold124G00930 PE=4 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 7.4e-59
Identity = 115/148 (77.70%), Postives = 129/148 (87.16%), Query Frame = 0


Query: 1   MFLKFKAEIENQLGKRIKRLRSNRGGEYSDKSLEEFCESNGITHEFTTPYSPQQNCIVEW 60
           MF+KFKAE ENQLGKRIKRLRS+RGGEYSDK+L+EFCESNGI HEFT PYSPQQN I E 
Sbjct: 571 MFIKFKAESENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAER 630

Query: 61  KNITLKKMMNAMLLSYGLSNNMWGEAVLSACFLFNNVPHRKLDKTSHELWKEYAPNRSYL 120
           KN TLK+MMNAMLLS GLS+NMWGEAVLSACF+ N +PH++LDKT +ELWK +APN SYL
Sbjct: 631 KNRTLKEMMNAMLLSSGLSDNMWGEAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYL 690

Query: 121 RVKGCLAKVSHPALKKSIVGSKTFDYIF 149
           +V GCLAKV  PALKK+ VG KTFD IF
Sbjct: 691 KVWGCLAKVPLPALKKTTVGPKTFDCIF 718

The following BLAST results are available for this feature:

BLAST of Cmc08g0227921 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0044881.1	1.4e-59	78.38	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0032318.1	4.0e-59	78.38	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0043346.1	1.2e-58	77.70	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0056761.1	1.5e-58	77.70	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK06518.1	1.5e-58	77.70	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc08g0227921 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.8e-22	37.58	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	2.8e-15	33.11	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q12491	2.9e-07	30.56	Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
P25384	2.9e-07	30.56	Transposon Ty2-C Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q12472	2.9e-07	30.56	Transposon Ty2-DR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC ...	[more]

BLAST of Cmc08g0227921 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TTN4	6.7e-60	78.38	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7SP23	2.0e-59	78.38	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7TMS2	5.7e-59	77.70	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3DJE2	7.4e-59	77.70	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3DSQ3	7.4e-59	77.70	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Cmc08g0227921 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..130 e-value: 2.3E-26 score: 94.3
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 1..114 score: 13.286555
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 2..121

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0227921.1	Cmc08g0227921.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding