Cmc08g0227591 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0227591
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase Ty1/copia-type domain-containing protein
Location	CMiso1.1chr08: 20775540 .. 20776511 (+)
RNA-Seq Expression	Cmc08g0227591
Synteny	Cmc08g0227591

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATCTTATAGATGTAGTTACAGCATACTTATATGGATCTTTGGTAAATGAAATCTATATGAAAATCCCTGAAGGATTTAAGATACCTGAATCATATAATTCAAACTCTAGAGAATTATATTCAATCAAATTACAAAGATCATTATATGGATTGAAACAATCAGGACGAATGTGGTACAATCGCTTAAGTGAATATTTATTGAAAGAATGTTATCAAAATAATCCAATTTGTCCATGTGTTTTTATTAAGAAATCACAGTCAGGATTTGCGATTATAGATGTATATGTTGATGATTTAAATATAATTGGAACTCGTGAAGAGCTTTCAAAGGCAATAGAATATCTCAAAAAGGAATTTGAAATGAAAGATCTTGGTAAGACAAAATTTTGCCTTGTCTTACAAATCGAGCATTTAGCCGATGAAATTTTTATTCATCGATCAACATATATAGAAAAGATTTTAAAAAGATTCTACGTGGACAAAGCACACCCATTGAACATTCCAATTGTGGTTCGATCACTAGATCTAAAAAAGGATATCTTTCGACCTCGAGAAGATAATGAAGAATTACTTGGTCTTGAAGTACCGTACCTTAGTGCGATAGGTGCACTAATGTATCTTGCTAATAACACAAGACCAGATATAGCATTTTCAGTAAATTTGTTAGCAAGATATAGTTCTTCTCCAACAAAAAGACATTGGAATGAAGTTAAGCATGTACTTCGTTATCTTCGAGGGACAATTGATATGGGTTTGTTTTATTCAAATAAATCAAACTTTGATGTAGTTGGTTATGCGGATGCTGGATATTTATCTGATCCACACAAAGCAAGATCTCAAACAGGTTATCTGTTTACATGTGGAGAAATTGCTATATCTTGGCGGTCTGTAAAGCAAACCATGACGGCCACTTCATCGAATCATGCAGAAATTCTTGCAATTCATGAAGCTAGTAAAGAATGTGTATGA

mRNA sequence

ATGCATCTTATAGATGTAGTTACAGCATACTTATATGGATCTTTGGTAAATGAAATCTATATGAAAATCCCTGAAGGATTTAAGATACCTGAATCATATAATTCAAACTCTAGAGAATTATATTCAATCAAATTACAAAGATCATTATATGGATTGAAACAATCAGGACGAATGTGGTACAATCGCTTAAGTGAATATTTATTGAAAGAATGTTATCAAAATAATCCAATTTGTCCATGTGTTTTTATTAAGAAATCACAGTCAGGATTTGCGATTATAGATGTATATGTTGATGATTTAAATATAATTGGAACTCGTGAAGAGCTTTCAAAGGCAATAGAATATCTCAAAAAGGAATTTGAAATGAAAGATCTTGGTAAGACAAAATTTTGCCTTGTCTTACAAATCGAGCATTTAGCCGATGAAATTTTTATTCATCGATCAACATATATAGAAAAGATTTTAAAAAGATTCTACGTGGACAAAGCACACCCATTGAACATTCCAATTGTGGTTCGATCACTAGATCTAAAAAAGGATATCTTTCGACCTCGAGAAGATAATGAAGAATTACTTGGTCTTGAAGTACCGTACCTTAGTGCGATAGGTGCACTAATGTATCTTGCTAATAACACAAGACCAGATATAGCATTTTCAGTAAATTTGTTAGCAAGATATAGTTCTTCTCCAACAAAAAGACATTGGAATGAAGTTAAGCATGTACTTCGTTATCTTCGAGGGACAATTGATATGGGTTTGTTTTATTCAAATAAATCAAACTTTGATGTAGTTGGTTATGCGGATGCTGGATATTTATCTGATCCACACAAAGCAAGATCTCAAACAGGTTATCTGTTTACATGTGGAGAAATTGCTATATCTTGGCGGTCTGTAAAGCAAACCATGACGGCCACTTCATCGAATCATGCAGAAATTCTTGCAATTCATGAAGCTAGTAAAGAATGTGTATGA

Coding sequence (CDS)

ATGCATCTTATAGATGTAGTTACAGCATACTTATATGGATCTTTGGTAAATGAAATCTATATGAAAATCCCTGAAGGATTTAAGATACCTGAATCATATAATTCAAACTCTAGAGAATTATATTCAATCAAATTACAAAGATCATTATATGGATTGAAACAATCAGGACGAATGTGGTACAATCGCTTAAGTGAATATTTATTGAAAGAATGTTATCAAAATAATCCAATTTGTCCATGTGTTTTTATTAAGAAATCACAGTCAGGATTTGCGATTATAGATGTATATGTTGATGATTTAAATATAATTGGAACTCGTGAAGAGCTTTCAAAGGCAATAGAATATCTCAAAAAGGAATTTGAAATGAAAGATCTTGGTAAGACAAAATTTTGCCTTGTCTTACAAATCGAGCATTTAGCCGATGAAATTTTTATTCATCGATCAACATATATAGAAAAGATTTTAAAAAGATTCTACGTGGACAAAGCACACCCATTGAACATTCCAATTGTGGTTCGATCACTAGATCTAAAAAAGGATATCTTTCGACCTCGAGAAGATAATGAAGAATTACTTGGTCTTGAAGTACCGTACCTTAGTGCGATAGGTGCACTAATGTATCTTGCTAATAACACAAGACCAGATATAGCATTTTCAGTAAATTTGTTAGCAAGATATAGTTCTTCTCCAACAAAAAGACATTGGAATGAAGTTAAGCATGTACTTCGTTATCTTCGAGGGACAATTGATATGGGTTTGTTTTATTCAAATAAATCAAACTTTGATGTAGTTGGTTATGCGGATGCTGGATATTTATCTGATCCACACAAAGCAAGATCTCAAACAGGTTATCTGTTTACATGTGGAGAAATTGCTATATCTTGGCGGTCTGTAAAGCAAACCATGACGGCCACTTCATCGAATCATGCAGAAATTCTTGCAATTCATGAAGCTAGTAAAGAATGTGTATGA

Protein sequence

MHLIDVVTAYLYGSLVNEIYMKIPEGFKIPESYNSNSRELYSIKLQRSLYGLKQSGRMWYNRLSEYLLKECYQNNPICPCVFIKKSQSGFAIIDVYVDDLNIIGTREELSKAIEYLKKEFEMKDLGKTKFCLVLQIEHLADEIFIHRSTYIEKILKRFYVDKAHPLNIPIVVRSLDLKKDIFRPREDNEELLGLEVPYLSAIGALMYLANNTRPDIAFSVNLLARYSSSPTKRHWNEVKHVLRYLRGTIDMGLFYSNKSNFDVVGYADAGYLSDPHKARSQTGYLFTCGEIAISWRSVKQTMTATSSNHAEILAIHEASKECV

Homology

[Close]

BLAST of Cmc08g0227591 vs. NCBI nr
Match: RVW13569.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 525.0 bits (1351), Expect = 4.5e-145
Identity = 249/323 (77.09%), Postives = 287/323 (88.85%), Query Frame = 0


Query: 1    MHLIDVVTAYLYGSLVNEIYMKIPEGFKIPESYNSNSRELYSIKLQRSLYGLKQSGRMWY 60
            M L+DV+TAYLYGS+ N+IYMKIPEGFK+P++ N+  R +YSIKLQRSLYGLKQSGRMWY
Sbjct: 701  MRLMDVITAYLYGSMDNDIYMKIPEGFKLPDANNTKPRSMYSIKLQRSLYGLKQSGRMWY 760

Query: 61   NRLSEYLLKECYQNNPICPCVFIKKSQSGFAIIDVYVDDLNIIGTREELSKAIEYLKKEF 120
            NRLSEYLLKE Y NNPICPC+FIKKS++GFAII VYVDDLN++GT EEL++   YLKKEF
Sbjct: 761  NRLSEYLLKEGYVNNPICPCIFIKKSETGFAIIAVYVDDLNLVGTPEELTRTTNYLKKEF 820

Query: 121  EMKDLGKTKFCLVLQIEHLADEIFIHRSTYIEKILKRFYVDKAHPLNIPIVVRSLDLKKD 180
            EMKDLGKTKFCL LQIEH  + + +H+STYI+K+LKRFY+DKAHPL+ P+VVRSLD+KKD
Sbjct: 821  EMKDLGKTKFCLSLQIEHFPNGVLVHQSTYIKKVLKRFYMDKAHPLSSPMVVRSLDVKKD 880

Query: 181  IFRPREDNEELLGLEVPYLSAIGALMYLANNTRPDIAFSVNLLARYSSSPTKRHWNEVKH 240
             FRP E +EELLG EVPYLSAIGALMYLAN TRPDIAFSVNLLARYSS+PT+RHWN +KH
Sbjct: 881  PFRPCEKDEELLGPEVPYLSAIGALMYLANCTRPDIAFSVNLLARYSSAPTRRHWNGIKH 940

Query: 241  VLRYLRGTIDMGLFYSNKSNFDVVGYADAGYLSDPHKARSQTGYLFTCGEIAISWRSVKQ 300
            +LRYLRGT DMGLFYS +S   ++GYADAGYLSDPHK RSQTGY+F C   AISWRSVKQ
Sbjct: 941  ILRYLRGTTDMGLFYSRESKQQLLGYADAGYLSDPHKGRSQTGYVFNCNGTAISWRSVKQ 1000

Query: 301  TMTATSSNHAEILAIHEASKECV 324
            TM ATSSNH+EILAIHEAS+EC+
Sbjct: 1001 TMVATSSNHSEILAIHEASRECI 1023

[Close]

BLAST of Cmc08g0227591 vs. NCBI nr
Match: RVW59049.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 524.6 bits (1350), Expect = 5.9e-145
Identity = 249/323 (77.09%), Postives = 287/323 (88.85%), Query Frame = 0


Query: 1   MHLIDVVTAYLYGSLVNEIYMKIPEGFKIPESYNSNSRELYSIKLQRSLYGLKQSGRMWY 60
           M L+DV+TAYLYGS+ N+IYMKIPEGFK+P++ N+  R +YSIKLQRSLYGLKQSGRMWY
Sbjct: 645 MRLMDVITAYLYGSMDNDIYMKIPEGFKLPDANNTKPRSMYSIKLQRSLYGLKQSGRMWY 704

Query: 61  NRLSEYLLKECYQNNPICPCVFIKKSQSGFAIIDVYVDDLNIIGTREELSKAIEYLKKEF 120
           NRLSEYLLKE Y NNPICPC+FIKKS++GFAII VYVDDLN++GT EEL++   YLKKEF
Sbjct: 705 NRLSEYLLKEGYVNNPICPCIFIKKSETGFAIIAVYVDDLNLVGTPEELTRTTNYLKKEF 764

Query: 121 EMKDLGKTKFCLVLQIEHLADEIFIHRSTYIEKILKRFYVDKAHPLNIPIVVRSLDLKKD 180
           EMKDLGKTKFCL LQIEH  + + +H+STYI+K+LKRFY+DKAHPL+ P+VVRSLD+KKD
Sbjct: 765 EMKDLGKTKFCLGLQIEHFPNGVLVHQSTYIKKVLKRFYMDKAHPLSSPMVVRSLDVKKD 824

Query: 181 IFRPREDNEELLGLEVPYLSAIGALMYLANNTRPDIAFSVNLLARYSSSPTKRHWNEVKH 240
            FRP E +EELLG EVPYLSAIGALMYLAN TRPDIAFSVNLLARYSS+PT+RHWN +KH
Sbjct: 825 PFRPCEKDEELLGPEVPYLSAIGALMYLANCTRPDIAFSVNLLARYSSAPTRRHWNGIKH 884

Query: 241 VLRYLRGTIDMGLFYSNKSNFDVVGYADAGYLSDPHKARSQTGYLFTCGEIAISWRSVKQ 300
           +LRYLRGT DMGLFYS +S   ++GYADAGYLSDPHK RSQTGY+F C   AISWRSVKQ
Sbjct: 885 ILRYLRGTTDMGLFYSRESKQQLLGYADAGYLSDPHKGRSQTGYVFNCNGTAISWRSVKQ 944

Query: 301 TMTATSSNHAEILAIHEASKECV 324
           TM ATSSNH+EILAIHEAS+EC+
Sbjct: 945 TMVATSSNHSEILAIHEASRECI 967

[Close]

BLAST of Cmc08g0227591 vs. NCBI nr
Match: RVW50867.1 (Copia protein [Vitis vinifera])

HSP 1 Score: 523.9 bits (1348), Expect = 1.0e-144
Identity = 248/323 (76.78%), Postives = 287/323 (88.85%), Query Frame = 0


Query: 1   MHLIDVVTAYLYGSLVNEIYMKIPEGFKIPESYNSNSRELYSIKLQRSLYGLKQSGRMWY 60
           M L+DV+TAYLYGS+ N+IYMKIPEGFK+P++ N+  R +YSIKLQRSLYGLKQSGRMWY
Sbjct: 658 MRLMDVITAYLYGSMDNDIYMKIPEGFKLPDANNTKPRSMYSIKLQRSLYGLKQSGRMWY 717

Query: 61  NRLSEYLLKECYQNNPICPCVFIKKSQSGFAIIDVYVDDLNIIGTREELSKAIEYLKKEF 120
           NRLSEYLLKE Y NNPICPC+FIKKS++GFAII VYVDDLN++GT EEL++   YLKKEF
Sbjct: 718 NRLSEYLLKEGYVNNPICPCIFIKKSETGFAIIAVYVDDLNLVGTPEELTRTTNYLKKEF 777

Query: 121 EMKDLGKTKFCLVLQIEHLADEIFIHRSTYIEKILKRFYVDKAHPLNIPIVVRSLDLKKD 180
           EMKDLGKTKFCL LQIEH  + + +H+STYI+K+LKRFY+DKAHPL+ P+VVRSLD+KKD
Sbjct: 778 EMKDLGKTKFCLGLQIEHFPNGVLVHQSTYIKKVLKRFYMDKAHPLSSPMVVRSLDVKKD 837

Query: 181 IFRPREDNEELLGLEVPYLSAIGALMYLANNTRPDIAFSVNLLARYSSSPTKRHWNEVKH 240
            FRP E +EELLG EVPYLSAIGALMYLAN TRPDIAFSVNLLA+YSS+PT+RHWN +KH
Sbjct: 838 SFRPCEKDEELLGPEVPYLSAIGALMYLANCTRPDIAFSVNLLAKYSSAPTRRHWNGIKH 897

Query: 241 VLRYLRGTIDMGLFYSNKSNFDVVGYADAGYLSDPHKARSQTGYLFTCGEIAISWRSVKQ 300
           +LRYLRGT DMGLFYS +S   ++GYADAGYLSDPHK RSQTGY+F C   AISWRSVKQ
Sbjct: 898 ILRYLRGTTDMGLFYSRESKQQLLGYADAGYLSDPHKGRSQTGYVFNCNGTAISWRSVKQ 957

Query: 301 TMTATSSNHAEILAIHEASKECV 324
           TM ATSSNH+EILAIHEAS+EC+
Sbjct: 958 TMVATSSNHSEILAIHEASRECI 980

[Close]

BLAST of Cmc08g0227591 vs. NCBI nr
Match: RVW51062.1 (Copia protein [Vitis vinifera])

HSP 1 Score: 523.5 bits (1347), Expect = 1.3e-144
Identity = 248/323 (76.78%), Postives = 287/323 (88.85%), Query Frame = 0


Query: 1   MHLIDVVTAYLYGSLVNEIYMKIPEGFKIPESYNSNSRELYSIKLQRSLYGLKQSGRMWY 60
           M L+DV+TAYLYGS+ N+IYMKIPEGFK+P++ N+  R +YSIKLQRSLYGLKQSGRMWY
Sbjct: 648 MRLMDVITAYLYGSMDNDIYMKIPEGFKLPDANNTKPRSMYSIKLQRSLYGLKQSGRMWY 707

Query: 61  NRLSEYLLKECYQNNPICPCVFIKKSQSGFAIIDVYVDDLNIIGTREELSKAIEYLKKEF 120
           NRLSEYLLKE Y NNPICPC+FIKKS++GFAII VYVDDLN++GT EEL++   YLKKEF
Sbjct: 708 NRLSEYLLKEGYVNNPICPCIFIKKSETGFAIIAVYVDDLNLVGTPEELTRTTNYLKKEF 767

Query: 121 EMKDLGKTKFCLVLQIEHLADEIFIHRSTYIEKILKRFYVDKAHPLNIPIVVRSLDLKKD 180
           EMKDLGKTKFCL LQIEH  + + +H+STYI+K+LKRFY+DKAHPL+ P+VVRSLD+KKD
Sbjct: 768 EMKDLGKTKFCLGLQIEHFPNGVLVHQSTYIKKVLKRFYMDKAHPLSSPMVVRSLDVKKD 827

Query: 181 IFRPREDNEELLGLEVPYLSAIGALMYLANNTRPDIAFSVNLLARYSSSPTKRHWNEVKH 240
            FRP E +EELLG EVPYL+AIGALMYLAN TRPDIAFSVNLLARYSS+PT+RHWN +KH
Sbjct: 828 PFRPCEKDEELLGPEVPYLNAIGALMYLANCTRPDIAFSVNLLARYSSAPTRRHWNGIKH 887

Query: 241 VLRYLRGTIDMGLFYSNKSNFDVVGYADAGYLSDPHKARSQTGYLFTCGEIAISWRSVKQ 300
           +LRYLRGT DMGLFYS +S   ++GYADAGYLSDPHK RSQTGY+F C   AISWRSVKQ
Sbjct: 888 ILRYLRGTTDMGLFYSRESKQQLLGYADAGYLSDPHKGRSQTGYVFNCNGTAISWRSVKQ 947

Query: 301 TMTATSSNHAEILAIHEASKECV 324
           TM ATSSNH+EILAIHEAS+EC+
Sbjct: 948 TMVATSSNHSEILAIHEASRECI 970

[Close]

BLAST of Cmc08g0227591 vs. NCBI nr
Match: CAN77974.1 (hypothetical protein VITISV_006175 [Vitis vinifera])

HSP 1 Score: 521.5 bits (1342), Expect = 5.0e-144
Identity = 247/320 (77.19%), Postives = 285/320 (89.06%), Query Frame = 0


Query: 4    IDVVTAYLYGSLVNEIYMKIPEGFKIPESYNSNSRELYSIKLQRSLYGLKQSGRMWYNRL 63
            +DV+TAYLYGS+ N+IYMKIPEGFK+P++ N+  R +YSIKLQRSLYGLKQSGRMWYNRL
Sbjct: 1067 MDVITAYLYGSMDNDIYMKIPEGFKLPDANNTKPRSMYSIKLQRSLYGLKQSGRMWYNRL 1126

Query: 64   SEYLLKECYQNNPICPCVFIKKSQSGFAIIDVYVDDLNIIGTREELSKAIEYLKKEFEMK 123
            SEYLLKE Y NNPICPC+FIKKS++GFAII VYVDDLN++GT EEL++   YLKKEFEMK
Sbjct: 1127 SEYLLKEGYVNNPICPCIFIKKSETGFAIIAVYVDDLNLVGTPEELTRTTNYLKKEFEMK 1186

Query: 124  DLGKTKFCLVLQIEHLADEIFIHRSTYIEKILKRFYVDKAHPLNIPIVVRSLDLKKDIFR 183
            DLGKTKFCL LQIEH  + + +H+STYI+K+LKRFY+DKAHPL+ P+VVRSLD+KKD FR
Sbjct: 1187 DLGKTKFCLGLQIEHFPNGVLVHQSTYIKKVLKRFYMDKAHPLSSPMVVRSLDVKKDPFR 1246

Query: 184  PREDNEELLGLEVPYLSAIGALMYLANNTRPDIAFSVNLLARYSSSPTKRHWNEVKHVLR 243
            P E +EELLG EVPYLSAIGALMYLAN TRPDIAFSVNLLARYSS+PT+RHWN +KH+LR
Sbjct: 1247 PCEXDEELLGPEVPYLSAIGALMYLANCTRPDIAFSVNLLARYSSAPTRRHWNGIKHILR 1306

Query: 244  YLRGTIDMGLFYSNKSNFDVVGYADAGYLSDPHKARSQTGYLFTCGEIAISWRSVKQTMT 303
            YLRGT DMGLFYS +S   ++GYADAGYLSDPHK RSQTGY+F C   AISWRSVKQTM 
Sbjct: 1307 YLRGTTDMGLFYSRESKQQLLGYADAGYLSDPHKGRSQTGYVFNCNGXAISWRSVKQTMV 1366

Query: 304  ATSSNHAEILAIHEASKECV 324
            ATSSNH+EILAIHEAS+EC+
Sbjct: 1367 ATSSNHSEILAIHEASRECI 1386

[Close]

BLAST of Cmc08g0227591 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 8.0e-52
Identity = 126/324 (38.89%), Postives = 187/324 (57.72%), Query Frame = 0


Query: 4    IDVVTAYLYGSLVNEIYMKIPEGFKIPESYNSNSRELYSIKLQRSLYGLKQSGRMWYNRL 63
            +DV TA+L+G L  EIYM+ PEGF++        ++    KL +SLYGLKQ+ R WY + 
Sbjct: 921  LDVKTAFLHGDLEEEIYMEQPEGFEVA------GKKHMVCKLNKSLYGLKQAPRQWYMKF 980

Query: 64   SEYLLKECYQNNPICPCVFIKK-SQSGFAIIDVYVDDLNIIGTREEL-SKAIEYLKKEFE 123
              ++  + Y      PCV+ K+ S++ F I+ +YVDD+ I+G  + L +K    L K F+
Sbjct: 981  DSFMKSQTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFD 1040

Query: 124  MKDLGKTKFCLVLQI--EHLADEIFIHRSTYIEKILKRFYVDKAHPLNIPIVVRSLDLKK 183
            MKDLG  +  L ++I  E  + ++++ +  YIE++L+RF +  A P++ P+    L L K
Sbjct: 1041 MKDLGPAQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPL-AGHLKLSK 1100

Query: 184  DIFRPREDNEELLGLEVPYLSAIGALMYLANNTRPDIAFSVNLLARYSSSPTKRHWNEVK 243
             +  P    E+    +VPY SA+G+LMY    TRPDIA +V +++R+  +P K HW  VK
Sbjct: 1101 KMC-PTTVEEKGNMAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVK 1160

Query: 244  HVLRYLRGTIDMGLFYSNKSNFDVVGYADAGYLSDPHKARSQTGYLFTCGEIAISWRSVK 303
             +LRYLRGT    L +   S+  + GY DA    D    +S TGYLFT    AISW+S  
Sbjct: 1161 WILRYLRGTTGDCLCFGG-SDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKL 1220

Query: 304  QTMTATSSNHAEILAIHEASKECV 324
            Q   A S+  AE +A  E  KE +
Sbjct: 1221 QKCVALSTTEAEYIAATETGKEMI 1235

[Close]

BLAST of Cmc08g0227591 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 186.0 bits (471), Expect = 6.5e-46
Identity = 117/334 (35.03%), Postives = 186/334 (55.69%), Query Frame = 0


Query: 1    MHLIDVVTAYLYGSLVNEIYMKIPEGFKIPESYNSNSRELYSIKLQRSLYGLKQSGRMWY 60
            +H +DV TA+L G+L  EIYM++P+G     S NS++      KL +++YGLKQ+ R W+
Sbjct: 998  VHQMDVKTAFLNGTLKEEIYMRLPQGI----SCNSDN----VCKLNKAIYGLKQAARCWF 1057

Query: 61   NRLSEYLLKEC-YQNNPICPCVFI--KKSQSGFAIIDVYVDDLNI-IGTREELSKAIEYL 120
              + E  LKEC + N+ +  C++I  K + +    + +YVDD+ I  G    ++    YL
Sbjct: 1058 -EVFEQALKECEFVNSSVDRCIYILDKGNINENIYVLLYVDDVVIATGDMTRMNNFKRYL 1117

Query: 121  KKEFEMKDLGKTKFCLVLQIEHLADEIFIHRSTYIEKILKRFYVDKAHPLNIPIVVRSLD 180
             ++F M DL + K  + ++IE   D+I++ +S Y++KIL +F ++  + ++ P+      
Sbjct: 1118 MEKFRMTDLNEIKHFIGIRIEMQEDKIYLSQSAYVKKILSKFNMENCNAVSTPL------ 1177

Query: 181  LKKDIFRPREDNEELLGLE----VPYLSAIGALMYLANNTRPDIAFSVNLLARYSSSPTK 240
                   P + N ELL  +     P  S IG LMY+   TRPD+  +VN+L+RYSS    
Sbjct: 1178 -------PSKINYELLNSDEDCNTPCRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNS 1237

Query: 241  RHWNEVKHVLRYLRGTIDMGLFYSNKSNFD--VVGYADAGYLSDPHKARSQTGYLFTCGE 300
              W  +K VLRYL+GTIDM L +     F+  ++GY D+ +       +S TGYLF   +
Sbjct: 1238 ELWQNLKRVLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFD 1297

Query: 301  I-AISWRSVKQTMTATSSNHAEILAIHEASKECV 324
               I W + +Q   A SS  AE +A+ EA +E +
Sbjct: 1298 FNLICWNTKRQNSVAASSTEAEYMALFEAVREAL 1309

[Close]

BLAST of Cmc08g0227591 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 8.0e-36
Identity = 103/320 (32.19%), Postives = 156/320 (48.75%), Query Frame = 0


Query: 4    IDVVTAYLYGSLVNEIYMKIPEGFKIPESYNSNSRELYSIKLQRSLYGLKQSGRMWYNRL 63
            +DV  A+L G+L +E+YM  P GF          R  Y  +L++++YGLKQ+ R WY  L
Sbjct: 1047 LDVNNAFLQGTLTDEVYMSQPPGFV------DKDRPDYVCRLRKAIYGLKQAPRAWYVEL 1106

Query: 64   SEYLLKECYQNNPICPCVFIKKSQSGFAIIDVYVDDLNIIGTREELSK-AIEYLKKEFEM 123
              YLL   + N+     +F+ +       + VYVDD+ I G    L K  ++ L + F +
Sbjct: 1107 RTYLLTVGFVNSISDTSLFVLQRGRSIIYMLVYVDDILITGNDTVLLKHTLDALSQRFSV 1166

Query: 124  KDLGKTKFCLVLQIEHLADEIFIHRSTYIEKILKRFYVDKAHPLNIPIVVR-SLDLKKDI 183
            K+     + L ++ + +   + + +  Y   +L R  +  A P+  P+     L L    
Sbjct: 1167 KEHEDLHYFLGIEAKRVPQGLHLSQRRYTLDLLARTNMLTAKPVATPMATSPKLTLHSGT 1226

Query: 184  FRPREDNEELLGLEVPYLSAIGALMYLANNTRPDIAFSVNLLARYSSSPTKRHWNEVKHV 243
              P  D  E  G+       +G+L YLA  TRPD++++VN L++Y   PT  HWN +K V
Sbjct: 1227 KLP--DPTEYRGI-------VGSLQYLA-FTRPDLSYAVNRLSQYMHMPTDDHWNALKRV 1286

Query: 244  LRYLRGTIDMGLFYSNKSNFDVVGYADAGYLSDPHKARSQTGYLFTCGEIAISWRSVKQT 303
            LRYL GT D G+F    +   +  Y+DA +  D     S  GY+   G   ISW S KQ 
Sbjct: 1287 LRYLAGTPDHGIFLKKGNTLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQK 1346

Query: 304  MTATSSNHAEILAIHEASKE 322
                SS  AE  ++   S E
Sbjct: 1347 GVVRSSTEAEYRSVANTSSE 1350

[Close]

BLAST of Cmc08g0227591 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.2e-34
Identity = 100/322 (31.06%), Postives = 155/322 (48.14%), Query Frame = 0


Query: 4    IDVVTAYLYGSLVNEIYMKIPEGFKIPESYNSNSRELYSIKLQRSLYGLKQSGRMWYNRL 63
            +DV  A+L G+L +++YM  P GF          R  Y  KL+++LYGLKQ+ R WY  L
Sbjct: 1064 LDVNNAFLQGTLTDDVYMSQPPGF------IDKDRPNYVCKLRKALYGLKQAPRAWYVEL 1123

Query: 64   SEYLLKECYQNNPICPCVFIKKSQSGFAIIDVYVDDLNIIGTREE-LSKAIEYLKKEFEM 123
              YLL   + N+     +F+ +       + VYVDD+ I G     L   ++ L + F +
Sbjct: 1124 RNYLLTIGFVNSVSDTSLFVLQRGKSIVYMLVYVDDILITGNDPTLLHNTLDNLSQRFSV 1183

Query: 124  KDLGKTKFCLVLQIEHLADEIFIHRSTYIEKILKRFYVDKAHPLNIPIVVR---SLDLKK 183
            KD  +  + L ++ + +   + + +  YI  +L R  +  A P+  P+      SL    
Sbjct: 1184 KDHEELHYFLGIEAKRVPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPSPKLSLYSGT 1243

Query: 184  DIFRPREDNEELLGLEVPYLSAIGALMYLANNTRPDIAFSVNLLARYSSSPTKRHWNEVK 243
             +  P E           Y   +G+L YLA  TRPDI+++VN L+++   PT+ H   +K
Sbjct: 1244 KLTDPTE-----------YRGIVGSLQYLA-FTRPDISYAVNRLSQFMHMPTEEHLQALK 1303

Query: 244  HVLRYLRGTIDMGLFYSNKSNFDVVGYADAGYLSDPHKARSQTGYLFTCGEIAISWRSVK 303
             +LRYL GT + G+F    +   +  Y+DA +  D     S  GY+   G   ISW S K
Sbjct: 1304 RILRYLAGTPNHGIFLKKGNTLSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKK 1363

Query: 304  QTMTATSSNHAEILAIHEASKE 322
            Q     SS  AE  ++   S E
Sbjct: 1364 QKGVVRSSTEAEYRSVANTSSE 1367

[Close]

BLAST of Cmc08g0227591 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 3.7e-25
Identity = 58/128 (45.31%), Postives = 80/128 (62.50%), Query Frame = 0


Query: 196 VPYLSAIGALMYLANNTRPDIAFSVNLLARYSSSPTKRHWNEVKHVLRYLRGTIDMGLFY 255
           VPYLSA+GA+MYL   TRPD+A +V +L++++S P   HW  +K VLRYL+ T   GL +
Sbjct: 4   VPYLSAVGAIMYLMVVTRPDLAAAVGVLSQFASDPCPTHWQALKRVLRYLQSTQTYGLEF 63

Query: 256 SNKSNFDVVGYADAGYLSDPHKARSQTGYLFTCGEIAISWRSVKQTMTATSSNHAEILAI 315
           +      +VGY+DA +  D    RS +GYLF      +SWRS KQ   A SS   E +A+
Sbjct: 64  TRAGTAKLVGYSDADWAGDVESRRSTSGYLFKLNGGCVSWRSKKQRTVALSSTEDEYMAL 123

Query: 316 HEASKECV 324
            EA++E V
Sbjct: 124 SEATQEAV 131

[Close]

BLAST of Cmc08g0227591 vs. ExPASy TrEMBL
Match: A0A2N9J4G7 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS59221 PE=4 SV=1)

HSP 1 Score: 542.7 bits (1397), Expect = 1.0e-150
Identity = 263/323 (81.42%), Postives = 292/323 (90.40%), Query Frame = 0


Query: 1   MHLIDVVTAYLYGSLVNEIYMKIPEGFKIPESYNSNSRELYSIKLQRSLYGLKQSGRMWY 60
           M L+DVVTAYLYGSL N+IYMKIPEG+K+PE+YNS SR +YSIKLQRSLYGLKQSGRMWY
Sbjct: 361 MRLMDVVTAYLYGSLDNDIYMKIPEGYKMPEAYNSKSRNMYSIKLQRSLYGLKQSGRMWY 420

Query: 61  NRLSEYLLKECYQNNPICPCVFIKKSQSGFAIIDVYVDDLNIIGTREELSKAIEYLKKEF 120
           NRLSEYLLKE ++NNPICPCVFIKKS+SGFAI+ VYVDDLN++GT EEL+K  +YLK EF
Sbjct: 421 NRLSEYLLKEGFENNPICPCVFIKKSESGFAIVAVYVDDLNLVGTPEELTKTADYLKNEF 480

Query: 121 EMKDLGKTKFCLVLQIEHLADEIFIHRSTYIEKILKRFYVDKAHPLNIPIVVRSLDLKKD 180
           EMKDLGKTKFCL LQIEHL D I IH+STYIEK+LK F++DKAHPL+ P+VVRSLD+KKD
Sbjct: 481 EMKDLGKTKFCLGLQIEHLPDGILIHQSTYIEKVLKHFHMDKAHPLSTPMVVRSLDVKKD 540

Query: 181 IFRPREDNEELLGLEVPYLSAIGALMYLANNTRPDIAFSVNLLARYSSSPTKRHWNEVKH 240
            FRP+E  EE LG EVPYLSAIGALMYLAN TRPDIAFSVNLLARYSS+PT RHWN VKH
Sbjct: 541 PFRPQEVGEETLGPEVPYLSAIGALMYLANCTRPDIAFSVNLLARYSSAPTLRHWNGVKH 600

Query: 241 VLRYLRGTIDMGLFYSNKSNFDVVGYADAGYLSDPHKARSQTGYLFTCGEIAISWRSVKQ 300
           VLRYLRGT DMGLFY NKSN  +VGYADAGYLSDPHK RSQTGYLFTCG  AISWRSVKQ
Sbjct: 601 VLRYLRGTTDMGLFYPNKSNPQLVGYADAGYLSDPHKGRSQTGYLFTCGNTAISWRSVKQ 660

Query: 301 TMTATSSNHAEILAIHEASKECV 324
           T++ATSSNH+EI+AIHEAS+ECV
Sbjct: 661 TISATSSNHSEIIAIHEASRECV 683

[Close]

BLAST of Cmc08g0227591 vs. ExPASy TrEMBL
Match: A0A2N9I099 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS45690 PE=4 SV=1)

HSP 1 Score: 542.7 bits (1397), Expect = 1.0e-150
Identity = 263/323 (81.42%), Postives = 292/323 (90.40%), Query Frame = 0


Query: 1   MHLIDVVTAYLYGSLVNEIYMKIPEGFKIPESYNSNSRELYSIKLQRSLYGLKQSGRMWY 60
           M L+DVVTAYLYGSL N+IYMKIPEG+K+PE+YNS SR +YSIKLQRSLYGLKQSGRMWY
Sbjct: 372 MRLMDVVTAYLYGSLDNDIYMKIPEGYKMPEAYNSKSRNMYSIKLQRSLYGLKQSGRMWY 431

Query: 61  NRLSEYLLKECYQNNPICPCVFIKKSQSGFAIIDVYVDDLNIIGTREELSKAIEYLKKEF 120
           NRLSEYLLKE ++NNPICPCVFIKKS+SGFAI+ VYVDDLN++GT EEL+K  +YLK EF
Sbjct: 432 NRLSEYLLKEGFENNPICPCVFIKKSESGFAIVAVYVDDLNLVGTPEELTKTADYLKNEF 491

Query: 121 EMKDLGKTKFCLVLQIEHLADEIFIHRSTYIEKILKRFYVDKAHPLNIPIVVRSLDLKKD 180
           EMKDLGKTKFCL LQIEHL D I IH+STYIEK+LK F++DKAHPL+ P+VVRSLD+KKD
Sbjct: 492 EMKDLGKTKFCLGLQIEHLPDGILIHQSTYIEKVLKHFHMDKAHPLSTPMVVRSLDVKKD 551

Query: 181 IFRPREDNEELLGLEVPYLSAIGALMYLANNTRPDIAFSVNLLARYSSSPTKRHWNEVKH 240
            FRP+E  EE LG EVPYLSAIGALMYLAN TRPDIAFSVNLLARYSS+PT RHWN VKH
Sbjct: 552 PFRPQEVGEETLGPEVPYLSAIGALMYLANCTRPDIAFSVNLLARYSSAPTLRHWNGVKH 611

Query: 241 VLRYLRGTIDMGLFYSNKSNFDVVGYADAGYLSDPHKARSQTGYLFTCGEIAISWRSVKQ 300
           VLRYLRGT DMGLFY NKSN  +VGYADAGYLSDPHK RSQTGYLFTCG  AISWRSVKQ
Sbjct: 612 VLRYLRGTTDMGLFYPNKSNPQLVGYADAGYLSDPHKGRSQTGYLFTCGNTAISWRSVKQ 671

Query: 301 TMTATSSNHAEILAIHEASKECV 324
           T++ATSSNH+EI+AIHEAS+ECV
Sbjct: 672 TISATSSNHSEIIAIHEASRECV 694

[Close]

BLAST of Cmc08g0227591 vs. ExPASy TrEMBL
Match: A0A2N9IR78 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS54505 PE=4 SV=1)

HSP 1 Score: 542.7 bits (1397), Expect = 1.0e-150
Identity = 263/323 (81.42%), Postives = 292/323 (90.40%), Query Frame = 0


Query: 1   MHLIDVVTAYLYGSLVNEIYMKIPEGFKIPESYNSNSRELYSIKLQRSLYGLKQSGRMWY 60
           M L+DVVTAYLYGSL N+IYMKIPEG+K+PE+YNS SR +YSIKLQRSLYGLKQSGRMWY
Sbjct: 173 MRLMDVVTAYLYGSLDNDIYMKIPEGYKMPEAYNSKSRNMYSIKLQRSLYGLKQSGRMWY 232

Query: 61  NRLSEYLLKECYQNNPICPCVFIKKSQSGFAIIDVYVDDLNIIGTREELSKAIEYLKKEF 120
           NRLSEYLLKE ++NNPICPCVFIKKS+SGFAI+ VYVDDLN++GT EEL+K  +YLK EF
Sbjct: 233 NRLSEYLLKEGFENNPICPCVFIKKSESGFAIVAVYVDDLNLVGTPEELTKTADYLKNEF 292

Query: 121 EMKDLGKTKFCLVLQIEHLADEIFIHRSTYIEKILKRFYVDKAHPLNIPIVVRSLDLKKD 180
           EMKDLGKTKFCL LQIEHL D I IH+STYIEK+LK F++DKAHPL+ P+VVRSLD+KKD
Sbjct: 293 EMKDLGKTKFCLGLQIEHLPDGILIHQSTYIEKVLKHFHMDKAHPLSTPMVVRSLDVKKD 352

Query: 181 IFRPREDNEELLGLEVPYLSAIGALMYLANNTRPDIAFSVNLLARYSSSPTKRHWNEVKH 240
            FRP+E  EE LG EVPYLSAIGALMYLAN TRPDIAFSVNLLARYSS+PT RHWN VKH
Sbjct: 353 PFRPQEVGEETLGPEVPYLSAIGALMYLANCTRPDIAFSVNLLARYSSAPTLRHWNGVKH 412

Query: 241 VLRYLRGTIDMGLFYSNKSNFDVVGYADAGYLSDPHKARSQTGYLFTCGEIAISWRSVKQ 300
           VLRYLRGT DMGLFY NKSN  +VGYADAGYLSDPHK RSQTGYLFTCG  AISWRSVKQ
Sbjct: 413 VLRYLRGTTDMGLFYPNKSNPQLVGYADAGYLSDPHKGRSQTGYLFTCGNTAISWRSVKQ 472

Query: 301 TMTATSSNHAEILAIHEASKECV 324
           T++ATSSNH+EI+AIHEAS+ECV
Sbjct: 473 TISATSSNHSEIIAIHEASRECV 495

[Close]

BLAST of Cmc08g0227591 vs. ExPASy TrEMBL
Match: A0A2N9G6F8 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS22947 PE=4 SV=1)

HSP 1 Score: 540.4 bits (1391), Expect = 5.0e-150
Identity = 261/323 (80.80%), Postives = 291/323 (90.09%), Query Frame = 0


Query: 1   MHLIDVVTAYLYGSLVNEIYMKIPEGFKIPESYNSNSRELYSIKLQRSLYGLKQSGRMWY 60
           M L+DVVTAYLYGSL N+IYMKIPEG+K+PE+YNS SR +YSIKLQRSLYGLKQSGRMWY
Sbjct: 335 MRLMDVVTAYLYGSLDNDIYMKIPEGYKMPEAYNSKSRNMYSIKLQRSLYGLKQSGRMWY 394

Query: 61  NRLSEYLLKECYQNNPICPCVFIKKSQSGFAIIDVYVDDLNIIGTREELSKAIEYLKKEF 120
           NRLSEYLLKE ++NNPICPCVFIKKS+SGFAI+ VYVDDLN++GT EEL+K  +YLK EF
Sbjct: 395 NRLSEYLLKEGFENNPICPCVFIKKSESGFAIVAVYVDDLNLVGTPEELTKTADYLKNEF 454

Query: 121 EMKDLGKTKFCLVLQIEHLADEIFIHRSTYIEKILKRFYVDKAHPLNIPIVVRSLDLKKD 180
           EMKDLGKTKFCL LQIEHL D I IH+STY EK+LK F++DKAHPL+ P+VVRSLD+KKD
Sbjct: 455 EMKDLGKTKFCLGLQIEHLPDGILIHQSTYTEKVLKHFHMDKAHPLSTPMVVRSLDVKKD 514

Query: 181 IFRPREDNEELLGLEVPYLSAIGALMYLANNTRPDIAFSVNLLARYSSSPTKRHWNEVKH 240
            FRP+E  EE LG EVPYLSAIGALMYLAN TRPDIAFSVNLLARYSS+PT RHWN VKH
Sbjct: 515 PFRPQEVGEETLGPEVPYLSAIGALMYLANCTRPDIAFSVNLLARYSSAPTLRHWNGVKH 574

Query: 241 VLRYLRGTIDMGLFYSNKSNFDVVGYADAGYLSDPHKARSQTGYLFTCGEIAISWRSVKQ 300
           VLRYLRGT DMGLFY NKSN  ++GYADAGYLSDPHK RSQTGYLFTCG  AISWRSVKQ
Sbjct: 575 VLRYLRGTTDMGLFYPNKSNPQLIGYADAGYLSDPHKGRSQTGYLFTCGNTAISWRSVKQ 634

Query: 301 TMTATSSNHAEILAIHEASKECV 324
           T++ATSSNH+EI+AIHEAS+ECV
Sbjct: 635 TISATSSNHSEIIAIHEASRECV 657

[Close]

BLAST of Cmc08g0227591 vs. ExPASy TrEMBL
Match: A0A2N9FK49 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS15524 PE=4 SV=1)

HSP 1 Score: 539.3 bits (1388), Expect = 1.1e-149
Identity = 261/323 (80.80%), Postives = 291/323 (90.09%), Query Frame = 0


Query: 1   MHLIDVVTAYLYGSLVNEIYMKIPEGFKIPESYNSNSRELYSIKLQRSLYGLKQSGRMWY 60
           M L+DVVTAYLYGSL N+IYMKIPEG+K+PE+YNS SR +YSIKLQRSLYGLKQSGRMWY
Sbjct: 295 MRLMDVVTAYLYGSLDNDIYMKIPEGYKMPEAYNSKSRNMYSIKLQRSLYGLKQSGRMWY 354

Query: 61  NRLSEYLLKECYQNNPICPCVFIKKSQSGFAIIDVYVDDLNIIGTREELSKAIEYLKKEF 120
           NRLSEYLLKE ++NNPICPCVFIKKS+SGFAI+ VYVDDLN++GT E+L+K  +YL  EF
Sbjct: 355 NRLSEYLLKEGFENNPICPCVFIKKSESGFAIVAVYVDDLNLVGTPEKLTKTADYLNNEF 414

Query: 121 EMKDLGKTKFCLVLQIEHLADEIFIHRSTYIEKILKRFYVDKAHPLNIPIVVRSLDLKKD 180
           EMKDLGKTKFCL LQIEHL D I IH+STYIEK+LK F++DKAHPL+ P+VVRSLD+KKD
Sbjct: 415 EMKDLGKTKFCLGLQIEHLPDGILIHQSTYIEKVLKHFHMDKAHPLSTPMVVRSLDVKKD 474

Query: 181 IFRPREDNEELLGLEVPYLSAIGALMYLANNTRPDIAFSVNLLARYSSSPTKRHWNEVKH 240
            FRP+E  EE LG EVPYLSAIGALMYLAN TRPDIAFSVNLLARYSS+PT RHWN VKH
Sbjct: 475 PFRPQEVGEETLGPEVPYLSAIGALMYLANCTRPDIAFSVNLLARYSSAPTLRHWNGVKH 534

Query: 241 VLRYLRGTIDMGLFYSNKSNFDVVGYADAGYLSDPHKARSQTGYLFTCGEIAISWRSVKQ 300
           VLRYLRGT DMGLFY NKSN  +VGYADAGYLSDPHK RSQTGYLFTCG  AISWRSVKQ
Sbjct: 535 VLRYLRGTTDMGLFYPNKSNPQLVGYADAGYLSDPHKGRSQTGYLFTCGNTAISWRSVKQ 594

Query: 301 TMTATSSNHAEILAIHEASKECV 324
           T++ATSSNH+EI+AIHEAS+ECV
Sbjct: 595 TISATSSNHSEIIAIHEASRECV 617

[Close]

BLAST of Cmc08g0227591 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 146.4 bits (368), Expect = 4.1e-35
Identity = 99/322 (30.75%), Postives = 162/322 (50.31%), Query Frame = 0


Query: 1   MHLIDVVTAYLYGSLVNEIYMKIPEGFKIPESYNSNSRELYSIKLQRSLYGLKQSGRMWY 60
           +H +D+  A+L G L  EIYMK+P G+   +  +     +  +K  +S+YGLKQ+ R W+
Sbjct: 190 LHQLDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLK--KSIYGLKQASRQWF 249

Query: 61  NRLSEYLLKECYQNNPICPCVFIKKSQSGFAIIDVYVDDLNIIGTRE-ELSKAIEYLKKE 120
            + S  L+   +  +      F+K + + F  + VYVDD+ I    +  + +    LK  
Sbjct: 250 LKFSVTLIGFGFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSC 309

Query: 121 FEMKDLGKTKFCLVLQIEHLADEIFIHRSTYIEKILKRFYVDKAHPLNIPIVVRSLDLKK 180
           F+++DLG  K+ L L+I   A  I I +  Y   +L    +    P ++P       +  
Sbjct: 310 FKLRDLGPLKYFLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVP-------MDP 369

Query: 181 DIFRPREDNEELLGLEVPYLSAIGALMYLANNTRPDIAFSVNLLARYSSSPTKRHWNEVK 240
            +        + +  +  Y   IG LMYL   TR DI+F+VN L+++S +P   H   V 
Sbjct: 370 SVTFSAHSGGDFVDAKA-YRRLIGRLMYL-QITRLDISFAVNKLSQFSEAPRLAHQQAVM 429

Query: 241 HVLRYLRGTIDMGLFYSNKSNFDVVGYADAGYLSDPHKARSQTGYLFTCGEIAISWRSVK 300
            +L Y++GT+  GLFYS+++   +  ++DA + S     RS  GY    G   ISW+S K
Sbjct: 430 KILHYIKGTVGQGLFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKK 489

Query: 301 QTMTATSSNHAEILAIHEASKE 322
           Q + + SS  AE  A+  A+ E
Sbjct: 490 QQVVSKSSAEAEYRALSFATDE 500

[Close]

BLAST of Cmc08g0227591 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 101.3 bits (251), Expect = 1.5e-21
Identity = 67/222 (30.18%), Postives = 110/222 (49.55%), Query Frame = 0


Query: 95  VYVDDLNIIGTREE-LSKAIEYLKKEFEMKDLGKTKFCLVLQIEHLADEIFIHRSTYIEK 154
           +YVDD+ + G+    L+  I  L   F MKDLG   + L +QI+     +F+ ++ Y E+
Sbjct: 5   LYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQ 64

Query: 155 ILKRFYVDKAHPLNIPIVVRSLDLKKDIFRPREDNEELLGLEVPYLSAIGALMYLANNTR 214
           IL    +    P++ P+    L L   +   +  +         + S +GAL YL   TR
Sbjct: 65  ILNNAGMLDCKPMSTPL---PLKLNSSVSTAKYPDPS------DFRSIVGALQYL-TLTR 124

Query: 215 PDIAFSVNLLARYSSSPTKRHWNEVKHVLRYLRGTIDMGLFYSNKSNFDVVGYADAGYLS 274
           PDI+++VN++ +    PT   ++ +K VLRY++GTI  GL+    S  +V  + D+ +  
Sbjct: 125 PDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAG 184

Query: 275 DPHKARSQTGYLFTCGEIAISWRSVKQTMTATSSNHAEILAI 316
                RS TG+    G   ISW + +Q   + SS   E  A+
Sbjct: 185 CTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRAL 216

[Close]

BLAST of Cmc08g0227591 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 65.1 bits (157), Expect = 1.2e-10
Identity = 33/79 (41.77%), Postives = 48/79 (60.76%), Query Frame = 0


Query: 206 MYLANNTRPDIAFSVNLLARYSSSPTKRHWNEVKHVLRYLRGTIDMGLFYSNKSNFDVVG 265
           MYL   TRPD+ F+VN L+++SS+        V  VL Y++GT+  GLFYS  S+  +  
Sbjct: 1   MYL-TITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKA 60

Query: 266 YADAGYLSDPHKARSQTGY 285
           +AD+ + S P   RS TG+
Sbjct: 61  FADSDWASCPDTRRSVTGF 78

The following BLAST results are available for this feature:

BLAST of Cmc08g0227591 vs. NCBI nr


Match Name	E-value	Identity	Description
RVW13569.1	4.5e-145	77.09	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
RVW59049.1	5.9e-145	77.09	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
RVW50867.1	1.0e-144	76.78	Copia protein [Vitis vinifera]	[more]
RVW51062.1	1.3e-144	76.78	Copia protein [Vitis vinifera]	[more]
CAN77974.1	5.0e-144	77.19	hypothetical protein VITISV_006175 [Vitis vinifera]	[more]

BLAST of Cmc08g0227591 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	8.0e-52	38.89	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	6.5e-46	35.03	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	8.0e-36	32.19	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	1.2e-34	31.06	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P0CV72	3.7e-25	45.31	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]

BLAST of Cmc08g0227591 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2N9J4G7	1.0e-150	81.42	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatic...	[more]
A0A2N9I099	1.0e-150	81.42	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatic...	[more]
A0A2N9IR78	1.0e-150	81.42	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatic...	[more]
A0A2N9G6F8	5.0e-150	80.80	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatic...	[more]
A0A2N9FK49	1.1e-149	80.80	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatic...	[more]

BLAST of Cmc08g0227591 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	4.1e-35	30.75	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	1.5e-21	30.18	DNA/RNA polymerases superfamily protein	[more]
ATMG00240.1	1.2e-10	41.77	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 1..170 e-value: 6.8E-32 score: 111.0
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 4..254
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 264..323 e-value: 4.23974E-18 score: 77.5085
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 2..320

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0227591.1	Cmc08g0227591.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding