Cmc08g0227441 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0227441
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr08: 20515841 .. 20516236 (+)
RNA-Seq Expression	Cmc08g0227441
Synteny	Cmc08g0227441

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTAAAGTCTATAAGGATTCTCTTGTCCATAGCCACATTTTATGATTATGAAATATGGCAAATGGATGTCAAGACTACTTTTCTGAATGGCAATCTTGAAGAGAGTATCTTTATATCTCAGCCCGAGGGGTTCATAATTCAAGGTCAGGAGCAAAAAGTTTGCAAGCTGAATCGATCCATTTATGGGTTGAAACAAGCATCTAGATCTTGGAACATTAAGTTTGATACTGCAATCAAATCCTACGATTTTGACCAAAACGTTAATGAACTTTGTATATATGAGAAAATCAACAAAAGTACAGTAGCTTTCTTAGTACTTTATGCGGATGATATCCTCCTCATTGGGAATGATATGGGATACCTCATCGACGTTAAAACTTGGTTAGCAGCCTAA

mRNA sequence

ATGTTAAAGTCTATAAGGATTCTCTTGTCCATAGCCACATTTTATGATTATGAAATATGGCAAATGGATGTCAAGACTACTTTTCTGAATGGCAATCTTGAAGAGAGTATCTTTATATCTCAGCCCGAGGGGTTCATAATTCAAGGTCAGGAGCAAAAAGTTTGCAAGCTGAATCGATCCATTTATGGGTTGAAACAAGCATCTAGATCTTGGAACATTAAGTTTGATACTGCAATCAAATCCTACGATTTTGACCAAAACGTTAATGAACTTTGTATATATGAGAAAATCAACAAAAGTACAGTAGCTTTCTTAGTACTTTATGCGGATGATATCCTCCTCATTGGGAATGATATGGGATACCTCATCGACGTTAAAACTTGGTTAGCAGCCTAA

Coding sequence (CDS)

ATGTTAAAGTCTATAAGGATTCTCTTGTCCATAGCCACATTTTATGATTATGAAATATGGCAAATGGATGTCAAGACTACTTTTCTGAATGGCAATCTTGAAGAGAGTATCTTTATATCTCAGCCCGAGGGGTTCATAATTCAAGGTCAGGAGCAAAAAGTTTGCAAGCTGAATCGATCCATTTATGGGTTGAAACAAGCATCTAGATCTTGGAACATTAAGTTTGATACTGCAATCAAATCCTACGATTTTGACCAAAACGTTAATGAACTTTGTATATATGAGAAAATCAACAAAAGTACAGTAGCTTTCTTAGTACTTTATGCGGATGATATCCTCCTCATTGGGAATGATATGGGATACCTCATCGACGTTAAAACTTGGTTAGCAGCCTAA

Protein sequence

MLKSIRILLSIATFYDYEIWQMDVKTTFLNGNLEESIFISQPEGFIIQGQEQKVCKLNRSIYGLKQASRSWNIKFDTAIKSYDFDQNVNELCIYEKINKSTVAFLVLYADDILLIGNDMGYLIDVKTWLAA

Homology

[Close]

BLAST of Cmc08g0227441 vs. NCBI nr
Match: TYK15984.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 238.4 bits (607), Expect = 3.4e-59
Identity = 116/131 (88.55%), Postives = 122/131 (93.13%), Query Frame = 0


Query: 1   MLKSIRILLSIATFYDYEIWQMDVKTTFLNGNLEESIFISQPEGFIIQGQEQKVCKLNRS 60
           MLKSIRILLSIATFYDYEIWQMDVKT FLNGNLEESIF+SQPEGFI QGQEQKVCKLNRS
Sbjct: 412 MLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIFMSQPEGFITQGQEQKVCKLNRS 471

Query: 61  IYGLKQASRSWNIKFDTAIKSYDFDQNVNELCIYEKINKSTVAFLVLYADDILLIGNDMG 120
           IYGLKQASRSWNI+FDTAIKSY FDQNV+E C+Y+KINK  VAFLVLY DDILLIGND+G
Sbjct: 472 IYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGNDVG 531

Query: 121 YLIDVKTWLAA 132
           YL DVK WLAA
Sbjct: 532 YLTDVKAWLAA 542

[Close]

BLAST of Cmc08g0227441 vs. NCBI nr
Match: KAA0025945.1 (gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0035786.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0040492.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0041262.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 238.4 bits (607), Expect = 3.4e-59
Identity = 116/131 (88.55%), Postives = 122/131 (93.13%), Query Frame = 0


Query: 1   MLKSIRILLSIATFYDYEIWQMDVKTTFLNGNLEESIFISQPEGFIIQGQEQKVCKLNRS 60
           MLKSIRILLSIATFYDYEIWQMDVKT FLNGNLEESIF+SQPEGFI QGQEQKVCKLNRS
Sbjct: 802 MLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIFMSQPEGFITQGQEQKVCKLNRS 861

Query: 61  IYGLKQASRSWNIKFDTAIKSYDFDQNVNELCIYEKINKSTVAFLVLYADDILLIGNDMG 120
           IYGLKQASRSWNI+FDTAIKSY FDQNV+E C+Y+KINK  VAFLVLY DDILLIGND+G
Sbjct: 862 IYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGNDVG 921

Query: 121 YLIDVKTWLAA 132
           YL DVK WLAA
Sbjct: 922 YLTDVKAWLAA 932

[Close]

BLAST of Cmc08g0227441 vs. NCBI nr
Match: KAA0059226.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 238.4 bits (607), Expect = 3.4e-59
Identity = 116/131 (88.55%), Postives = 122/131 (93.13%), Query Frame = 0


Query: 1   MLKSIRILLSIATFYDYEIWQMDVKTTFLNGNLEESIFISQPEGFIIQGQEQKVCKLNRS 60
           MLKSIRILLSIATFYDYEIWQMDVKT FLNGNLEESIF+SQPEGFI QGQEQKVCKLNRS
Sbjct: 676 MLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIFMSQPEGFITQGQEQKVCKLNRS 735

Query: 61  IYGLKQASRSWNIKFDTAIKSYDFDQNVNELCIYEKINKSTVAFLVLYADDILLIGNDMG 120
           IYGLKQASRSWNI+FDTAIKSY FDQNV+E C+Y+KINK  VAFLVLY DDILLIGND+G
Sbjct: 736 IYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGNDVG 795

Query: 121 YLIDVKTWLAA 132
           YL DVK WLAA
Sbjct: 796 YLTDVKAWLAA 806

[Close]

BLAST of Cmc08g0227441 vs. NCBI nr
Match: KAA0035907.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 236.1 bits (601), Expect = 1.7e-58
Identity = 115/131 (87.79%), Postives = 121/131 (92.37%), Query Frame = 0


Query: 1   MLKSIRILLSIATFYDYEIWQMDVKTTFLNGNLEESIFISQPEGFIIQGQEQKVCKLNRS 60
           MLKSIRILLSIA FYDYEIWQMDVKT FLNGNLEESIF+SQPEGFI QGQEQKVCKLNRS
Sbjct: 802 MLKSIRILLSIAKFYDYEIWQMDVKTAFLNGNLEESIFMSQPEGFITQGQEQKVCKLNRS 861

Query: 61  IYGLKQASRSWNIKFDTAIKSYDFDQNVNELCIYEKINKSTVAFLVLYADDILLIGNDMG 120
           IYGLKQASRSWNI+FDTAIKSY FDQNV+E C+Y+KINK  VAFLVLY DDILLIGND+G
Sbjct: 862 IYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGNDVG 921

Query: 121 YLIDVKTWLAA 132
           YL DVK WLAA
Sbjct: 922 YLTDVKAWLAA 932

[Close]

BLAST of Cmc08g0227441 vs. NCBI nr
Match: KAA0058278.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 235.7 bits (600), Expect = 2.2e-58
Identity = 115/131 (87.79%), Postives = 121/131 (92.37%), Query Frame = 0


Query: 1   MLKSIRILLSIATFYDYEIWQMDVKTTFLNGNLEESIFISQPEGFIIQGQEQKVCKLNRS 60
           MLKSIRILLSIATFYDYEIWQMDVKT FLN NLEESIF+SQPEGFI QGQEQKVCKLNRS
Sbjct: 642 MLKSIRILLSIATFYDYEIWQMDVKTAFLNDNLEESIFMSQPEGFITQGQEQKVCKLNRS 701

Query: 61  IYGLKQASRSWNIKFDTAIKSYDFDQNVNELCIYEKINKSTVAFLVLYADDILLIGNDMG 120
           IYGLKQASRSWNI+FDTAIKSY FDQNV+E C+Y+KINK  VAFLVLY DDILLIGND+G
Sbjct: 702 IYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGNDVG 761

Query: 121 YLIDVKTWLAA 132
           YL DVK WLAA
Sbjct: 762 YLTDVKAWLAA 772

[Close]

BLAST of Cmc08g0227441 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 7.3e-28
Identity = 57/126 (45.24%), Postives = 90/126 (71.43%), Query Frame = 0


Query: 2    LKSIRILLSIATFYDYEIWQMDVKTTFLNGNLEESIFISQPEGFIIQGQEQKVCKLNRSI 61
            + SIR +LS+A   D E+ Q+DVKT FL+G+LEE I++ QPEGF + G++  VCKLN+S+
Sbjct: 901  MTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSL 960

Query: 62   YGLKQASRSWNIKFDTAIKSYDFDQNVNELCIY-EKINKSTVAFLVLYADDILLIGNDMG 121
            YGLKQA R W +KFD+ +KS  + +  ++ C+Y ++ +++    L+LY DD+L++G D G
Sbjct: 961  YGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKG 1020

Query: 122  YLIDVK 127
             +  +K
Sbjct: 1021 LIAKLK 1026

[Close]

BLAST of Cmc08g0227441 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 98.6 bits (244), Expect = 5.6e-20
Identity = 52/130 (40.00%), Postives = 81/130 (62.31%), Query Frame = 0


Query: 2    LKSIRILLSIATFYDYEIWQMDVKTTFLNGNLEESIFISQPEGFIIQGQEQKVCKLNRSI 61
            + S R +LS+   Y+ ++ QMDVKT FLNG L+E I++  P+G  I      VCKLN++I
Sbjct: 981  ISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQG--ISCNSDNVCKLNKAI 1040

Query: 62   YGLKQASRSWNIKFDTAIKSYDFDQNVNELCIY--EKINKSTVAFLVLYADDILLIGNDM 121
            YGLKQA+R W   F+ A+K  +F  +  + CIY  +K N +   +++LY DD+++   DM
Sbjct: 1041 YGLKQAARCWFEVFEQALKECEFVNSSVDRCIYILDKGNINENIYVLLYVDDVVIATGDM 1100

Query: 122  GYLIDVKTWL 130
              + + K +L
Sbjct: 1101 TRMNNFKRYL 1108

[Close]

BLAST of Cmc08g0227441 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.3e-18
Identity = 42/115 (36.52%), Postives = 72/115 (62.61%), Query Frame = 0


Query: 4    SIRILLSIATFYDYEIWQMDVKTTFLNGNLEESIFISQPEGFIIQGQEQKVCKLNRSIYG 63
            SIRI+L +A    + I Q+DV   FL G L + +++SQP GFI + +   VCKL +++YG
Sbjct: 1046 SIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRKALYG 1105

Query: 64   LKQASRSWNIKFDTAIKSYDFDQNVNELCIYEKINKSTVAFLVLYADDILLIGND 119
            LKQA R+W ++    + +  F  +V++  ++      ++ ++++Y DDIL+ GND
Sbjct: 1106 LKQAPRAWYVELRNYLLTIGFVNSVSDTSLFVLQRGKSIVYMLVYVDDILITGND 1160

[Close]

BLAST of Cmc08g0227441 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.3e-18
Identity = 41/115 (35.65%), Postives = 73/115 (63.48%), Query Frame = 0


Query: 4    SIRILLSIATFYDYEIWQMDVKTTFLNGNLEESIFISQPEGFIIQGQEQKVCKLNRSIYG 63
            SIRI+L +A    + I Q+DV   FL G L + +++SQP GF+ + +   VC+L ++IYG
Sbjct: 1029 SIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDEVYMSQPPGFVDKDRPDYVCRLRKAIYG 1088

Query: 64   LKQASRSWNIKFDTAIKSYDFDQNVNELCIYEKINKSTVAFLVLYADDILLIGND 119
            LKQA R+W ++  T + +  F  ++++  ++      ++ ++++Y DDIL+ GND
Sbjct: 1089 LKQAPRAWYVELRTYLLTVGFVNSISDTSLFVLQRGRSIIYMLVYVDDILITGND 1143

[Close]

BLAST of Cmc08g0227441 vs. ExPASy Swiss-Prot
Match: P25600 (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5A PE=5 SV=2)

HSP 1 Score: 65.1 bits (157), Expect = 6.8e-10
Identity = 31/93 (33.33%), Postives = 50/93 (53.76%), Query Frame = 0


Query: 22  MDVKTTFLNGNLEESIFISQPEGFIIQGQEQKVCKLNRSIYGLKQASRSWNIKFDTAIKS 81
           MDV T FLN  ++E I++ QP GF+ +     V +L   +YGLKQA   WN   +  +K 
Sbjct: 1   MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKK 60

Query: 82  YDFDQNVNELCIYEKINKSTVAFLVLYADDILL 115
             F ++  E  +Y +       ++ +Y DD+L+
Sbjct: 61  IGFCRHEGEHGLYFRSTSDGPIYIAVYVDDLLV 93

[Close]

BLAST of Cmc08g0227441 vs. ExPASy TrEMBL
Match: A0A5A7TZD0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00090 PE=4 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 1.7e-59
Identity = 116/131 (88.55%), Postives = 122/131 (93.13%), Query Frame = 0


Query: 1   MLKSIRILLSIATFYDYEIWQMDVKTTFLNGNLEESIFISQPEGFIIQGQEQKVCKLNRS 60
           MLKSIRILLSIATFYDYEIWQMDVKT FLNGNLEESIF+SQPEGFI QGQEQKVCKLNRS
Sbjct: 802 MLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIFMSQPEGFITQGQEQKVCKLNRS 861

Query: 61  IYGLKQASRSWNIKFDTAIKSYDFDQNVNELCIYEKINKSTVAFLVLYADDILLIGNDMG 120
           IYGLKQASRSWNI+FDTAIKSY FDQNV+E C+Y+KINK  VAFLVLY DDILLIGND+G
Sbjct: 862 IYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGNDVG 921

Query: 121 YLIDVKTWLAA 132
           YL DVK WLAA
Sbjct: 922 YLTDVKAWLAA 932

[Close]

BLAST of Cmc08g0227441 vs. ExPASy TrEMBL
Match: A0A5D3CYF4 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G001110 PE=4 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 1.7e-59
Identity = 116/131 (88.55%), Postives = 122/131 (93.13%), Query Frame = 0


Query: 1   MLKSIRILLSIATFYDYEIWQMDVKTTFLNGNLEESIFISQPEGFIIQGQEQKVCKLNRS 60
           MLKSIRILLSIATFYDYEIWQMDVKT FLNGNLEESIF+SQPEGFI QGQEQKVCKLNRS
Sbjct: 412 MLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIFMSQPEGFITQGQEQKVCKLNRS 471

Query: 61  IYGLKQASRSWNIKFDTAIKSYDFDQNVNELCIYEKINKSTVAFLVLYADDILLIGNDMG 120
           IYGLKQASRSWNI+FDTAIKSY FDQNV+E C+Y+KINK  VAFLVLY DDILLIGND+G
Sbjct: 472 IYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGNDVG 531

Query: 121 YLIDVKTWLAA 132
           YL DVK WLAA
Sbjct: 532 YLTDVKAWLAA 542

[Close]

BLAST of Cmc08g0227441 vs. ExPASy TrEMBL
Match: A0A5A7UYE8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G001570 PE=4 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 1.7e-59
Identity = 116/131 (88.55%), Postives = 122/131 (93.13%), Query Frame = 0


Query: 1   MLKSIRILLSIATFYDYEIWQMDVKTTFLNGNLEESIFISQPEGFIIQGQEQKVCKLNRS 60
           MLKSIRILLSIATFYDYEIWQMDVKT FLNGNLEESIF+SQPEGFI QGQEQKVCKLNRS
Sbjct: 676 MLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIFMSQPEGFITQGQEQKVCKLNRS 735

Query: 61  IYGLKQASRSWNIKFDTAIKSYDFDQNVNELCIYEKINKSTVAFLVLYADDILLIGNDMG 120
           IYGLKQASRSWNI+FDTAIKSY FDQNV+E C+Y+KINK  VAFLVLY DDILLIGND+G
Sbjct: 736 IYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGNDVG 795

Query: 121 YLIDVKTWLAA 132
           YL DVK WLAA
Sbjct: 796 YLTDVKAWLAA 806

[Close]

BLAST of Cmc08g0227441 vs. ExPASy TrEMBL
Match: A0A5A7T2V9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G00760 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 8.3e-59
Identity = 115/131 (87.79%), Postives = 121/131 (92.37%), Query Frame = 0


Query: 1   MLKSIRILLSIATFYDYEIWQMDVKTTFLNGNLEESIFISQPEGFIIQGQEQKVCKLNRS 60
           MLKSIRILLSIA FYDYEIWQMDVKT FLNGNLEESIF+SQPEGFI QGQEQKVCKLNRS
Sbjct: 802 MLKSIRILLSIAKFYDYEIWQMDVKTAFLNGNLEESIFMSQPEGFITQGQEQKVCKLNRS 861

Query: 61  IYGLKQASRSWNIKFDTAIKSYDFDQNVNELCIYEKINKSTVAFLVLYADDILLIGNDMG 120
           IYGLKQASRSWNI+FDTAIKSY FDQNV+E C+Y+KINK  VAFLVLY DDILLIGND+G
Sbjct: 862 IYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGNDVG 921

Query: 121 YLIDVKTWLAA 132
           YL DVK WLAA
Sbjct: 922 YLTDVKAWLAA 932

[Close]

BLAST of Cmc08g0227441 vs. ExPASy TrEMBL
Match: A0A5A7USZ2 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G006070 PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 1.1e-58
Identity = 115/131 (87.79%), Postives = 121/131 (92.37%), Query Frame = 0


Query: 1   MLKSIRILLSIATFYDYEIWQMDVKTTFLNGNLEESIFISQPEGFIIQGQEQKVCKLNRS 60
           MLKSIRILLSIATFYDYEIWQMDVKT FLN NLEESIF+SQPEGFI QGQEQKVCKLNRS
Sbjct: 642 MLKSIRILLSIATFYDYEIWQMDVKTAFLNDNLEESIFMSQPEGFITQGQEQKVCKLNRS 701

Query: 61  IYGLKQASRSWNIKFDTAIKSYDFDQNVNELCIYEKINKSTVAFLVLYADDILLIGNDMG 120
           IYGLKQASRSWNI+FDTAIKSY FDQNV+E C+Y+KINK  VAFLVLY DDILLIGND+G
Sbjct: 702 IYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGNDVG 761

Query: 121 YLIDVKTWLAA 132
           YL DVK WLAA
Sbjct: 762 YLTDVKAWLAA 772

[Close]

BLAST of Cmc08g0227441 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 90.9 bits (224), Expect = 8.3e-19
Identity = 45/132 (34.09%), Postives = 80/132 (60.61%), Query Frame = 0


Query: 2   LKSIRILLSIATFYDYEIWQMDVKTTFLNGNLEESIFISQPEGFII-QGQE---QKVCKL 61
           L S++++L+I+  Y++ + Q+D+   FLNG+L+E I++  P G+   QG       VC L
Sbjct: 173 LTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYL 232

Query: 62  NRSIYGLKQASRSWNIKFDTAIKSYDFDQNVNELCIYEKINKSTVAFLVLYADDILLIGN 121
            +SIYGLKQASR W +KF   +  + F Q+ ++   + KI  +    +++Y DDI++  N
Sbjct: 233 KKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSN 292

Query: 122 DMGYLIDVKTWL 130
           +   + ++K+ L
Sbjct: 293 NDAAVDELKSQL 304

The following BLAST results are available for this feature:

BLAST of Cmc08g0227441 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK15984.1	3.4e-59	88.55	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0025945.1	3.4e-59	88.55	gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumi...	[more]
KAA0059226.1	3.4e-59	88.55	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0035907.1	1.7e-58	87.79	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0058278.1	2.2e-58	87.79	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc08g0227441 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	7.3e-28	45.24	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	5.6e-20	40.00	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q94HW2	2.3e-18	36.52	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	2.3e-18	35.65	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P25600	6.8e-10	33.33	Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain AT...	[more]

BLAST of Cmc08g0227441 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TZD0	1.7e-59	88.55	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G000...	[more]
A0A5D3CYF4	1.7e-59	88.55	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00111...	[more]
A0A5A7UYE8	1.7e-59	88.55	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G0015...	[more]
A0A5A7T2V9	8.3e-59	87.79	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G00760...	[more]
A0A5A7USZ2	1.1e-58	87.79	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G0060...	[more]

BLAST of Cmc08g0227441 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	8.3e-19	34.09	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 2..130 e-value: 1.6E-37 score: 129.5
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 4..122
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 16..126

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0227441.1	Cmc08g0227441.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding