Cmc08g0227241 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0227241
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon RE1
Location	CMiso1.1chr08: 20151824 .. 20152525 (-)
RNA-Seq Expression	Cmc08g0227241
Synteny	Cmc08g0227241

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGTTTGCTATAAAGGTAAATTCCGTTGGAACAGTGGCTCGGTTGAAAGTTCGTCTCATTGCCAAAGGTTATGCCAAATGTATGGAATGGATTATTTTGATACATTTTCTCATGTTGCCAAGTTAATTTCCATTCGACTATTTCTTTCCATGGCTGCTACTCACAATTGGCCTTTACATCAACTCGACATTAAGAATGTTCTTCTTCATAGTGATCTTCCAGAGGATGTTTATATGGAGCAACCACCTGGGTTTGTTGCTCAGGGGGAGAGTGGTAAGGTGTGTTGCCTTCCACAATCTTTGTGTGAACTGAAACAAAGCCCTCATGGATGGTTTGGTAAGTTAAATCAAGCACTAGAGTATTTTAGCATGAAGAAAAGTACATATGATAATTTCGTATTCTATCGACGATCTGACAATGGTATTACTTTGTTTGTTGTATATGTTGACGATGTCGTTATCACTGGAAATGATGTGTTAGGTATATCTCCTCTCAAGACTTTCCTCCAAGGTTTATTTCATACCACAAATTTGGAGCGATTGAAGTATTTCTTGGGTATTGAAGTAATGACAAGTAAGAAAGGTATTTACCCATCCCAATGGAAATATGCGTTTGATTTGTTGTTTGAGATAGGTAAACTAGGAATCAAACCATGTAGTACTTCAATGATACCAAATTTTCGACTTGCTAAGGAATGA

mRNA sequence

ATGGGTGTTTGCTATAAAGGTAAATTCCGTTGGAACAGTGGCTCGGTTGAAAGTTCGTCTCATTGCCAAAGGTTATGCCAAATGTATGGAATGGATTATTTTGATACATTTTCTCATGTTGCCAAGTTAATTTCCATTCGACTATTTCTTTCCATGGCTGCTACTCACAATTGGCCTTTACATCAACTCGACATTAAGAATGTTCTTCTTCATAGTGATCTTCCAGAGGATGTTTATATGGAGCAACCACCTGGGTTTGTTGCTCAGGGGGAGAGTGGTAAGGTGTGTTGCCTTCCACAATCTTTGTGTGAACTGAAACAAAGCCCTCATGGATGGTTTGGTAAGTTAAATCAAGCACTAGAGTATTTTAGCATGAAGAAAAGTACATATGATAATTTCGTATTCTATCGACGATCTGACAATGGTATTACTTTGTTTGTTGTATATGTTGACGATGTCGTTATCACTGGAAATGATGTGTTAGGTATATCTCCTCTCAAGACTTTCCTCCAAGGTTTATTTCATACCACAAATTTGGAGCGATTGAAGTATTTCTTGGGTATTGAAGTAATGACAAGTAAGAAAGGTATTTACCCATCCCAATGGAAATATGCGTTTGATTTGTTGTTTGAGATAGGTAAACTAGGAATCAAACCATGTAGTACTTCAATGATACCAAATTTTCGACTTGCTAAGGAATGA

Coding sequence (CDS)

ATGGGTGTTTGCTATAAAGGTAAATTCCGTTGGAACAGTGGCTCGGTTGAAAGTTCGTCTCATTGCCAAAGGTTATGCCAAATGTATGGAATGGATTATTTTGATACATTTTCTCATGTTGCCAAGTTAATTTCCATTCGACTATTTCTTTCCATGGCTGCTACTCACAATTGGCCTTTACATCAACTCGACATTAAGAATGTTCTTCTTCATAGTGATCTTCCAGAGGATGTTTATATGGAGCAACCACCTGGGTTTGTTGCTCAGGGGGAGAGTGGTAAGGTGTGTTGCCTTCCACAATCTTTGTGTGAACTGAAACAAAGCCCTCATGGATGGTTTGGTAAGTTAAATCAAGCACTAGAGTATTTTAGCATGAAGAAAAGTACATATGATAATTTCGTATTCTATCGACGATCTGACAATGGTATTACTTTGTTTGTTGTATATGTTGACGATGTCGTTATCACTGGAAATGATGTGTTAGGTATATCTCCTCTCAAGACTTTCCTCCAAGGTTTATTTCATACCACAAATTTGGAGCGATTGAAGTATTTCTTGGGTATTGAAGTAATGACAAGTAAGAAAGGTATTTACCCATCCCAATGGAAATATGCGTTTGATTTGTTGTTTGAGATAGGTAAACTAGGAATCAAACCATGTAGTACTTCAATGATACCAAATTTTCGACTTGCTAAGGAATGA

Protein sequence

MGVCYKGKFRWNSGSVESSSHCQRLCQMYGMDYFDTFSHVAKLISIRLFLSMAATHNWPLHQLDIKNVLLHSDLPEDVYMEQPPGFVAQGESGKVCCLPQSLCELKQSPHGWFGKLNQALEYFSMKKSTYDNFVFYRRSDNGITLFVVYVDDVVITGNDVLGISPLKTFLQGLFHTTNLERLKYFLGIEVMTSKKGIYPSQWKYAFDLLFEIGKLGIKPCSTSMIPNFRLAKE

Homology

[Close]

BLAST of Cmc08g0227241 vs. NCBI nr
Match: XP_031744754.1 (uncharacterized protein LOC101212255 isoform X2 [Cucumis sativus])

HSP 1 Score: 295.0 bits (754), Expect = 5.5e-76
Identity = 150/207 (72.46%), Postives = 163/207 (78.74%), Query Frame = 0


Query: 27   QMYGMDYFDTFSHVAKLISIRLFLSMAATHNWPLHQLDIKNVLLHSDLPEDVYMEQPPGF 86
            Q+YG DY DTFS VAKL SIRLFLSMAAT+ W LHQLDIKN  LH DL E+VYMEQPPGF
Sbjct: 909  QIYGTDYSDTFSPVAKLTSIRLFLSMAATNKWSLHQLDIKNAFLHGDLQEEVYMEQPPGF 968

Query: 87   VAQGESGKVCCLPQSLCELKQSPHGWFGKLNQALEYFSMKKSTYDNFVFYRRSDNGITLF 146
            VAQGES KVC L +SL  LKQSP  WFGK +QAL  F MKKST D+ VFYRRS+ GI L 
Sbjct: 969  VAQGESDKVCRLRKSLYGLKQSPRAWFGKFSQALVCFGMKKSTSDHSVFYRRSEKGIVLL 1028

Query: 147  VVYVDDVVITGNDVLGISPLKTFLQGLFHTTNLERLKYFLGIEVMTSKKGIYPSQWKYAF 206
            VVYVDD+VITGND LGIS LKTFLQG F+T +L +LKYFLGIEVM SKKGIY SQ KY  
Sbjct: 1029 VVYVDDIVITGNDALGISSLKTFLQGQFYTKDLGQLKYFLGIEVMRSKKGIYLSQRKYVL 1088

Query: 207  DLLFEIGKLGIKPCSTSMIPNFRLAKE 234
            DLL E GKLG KP  T M+PN +L KE
Sbjct: 1089 DLLSETGKLGAKPSGTPMMPNQQLVKE 1115

[Close]

BLAST of Cmc08g0227241 vs. NCBI nr
Match: XP_031744758.1 (uncharacterized protein LOC101212255 isoform X5 [Cucumis sativus])

HSP 1 Score: 295.0 bits (754), Expect = 5.5e-76
Identity = 150/207 (72.46%), Postives = 163/207 (78.74%), Query Frame = 0


Query: 27  QMYGMDYFDTFSHVAKLISIRLFLSMAATHNWPLHQLDIKNVLLHSDLPEDVYMEQPPGF 86
           Q+YG DY DTFS VAKL SIRLFLSMAAT+ W LHQLDIKN  LH DL E+VYMEQPPGF
Sbjct: 532 QIYGTDYSDTFSPVAKLTSIRLFLSMAATNKWSLHQLDIKNAFLHGDLQEEVYMEQPPGF 591

Query: 87  VAQGESGKVCCLPQSLCELKQSPHGWFGKLNQALEYFSMKKSTYDNFVFYRRSDNGITLF 146
           VAQGES KVC L +SL  LKQSP  WFGK +QAL  F MKKST D+ VFYRRS+ GI L 
Sbjct: 592 VAQGESDKVCRLRKSLYGLKQSPRAWFGKFSQALVCFGMKKSTSDHSVFYRRSEKGIVLL 651

Query: 147 VVYVDDVVITGNDVLGISPLKTFLQGLFHTTNLERLKYFLGIEVMTSKKGIYPSQWKYAF 206
           VVYVDD+VITGND LGIS LKTFLQG F+T +L +LKYFLGIEVM SKKGIY SQ KY  
Sbjct: 652 VVYVDDIVITGNDALGISSLKTFLQGQFYTKDLGQLKYFLGIEVMRSKKGIYLSQRKYVL 711

Query: 207 DLLFEIGKLGIKPCSTSMIPNFRLAKE 234
           DLL E GKLG KP  T M+PN +L KE
Sbjct: 712 DLLSETGKLGAKPSGTPMMPNQQLVKE 738

[Close]

BLAST of Cmc08g0227241 vs. NCBI nr
Match: XP_031744753.1 (uncharacterized protein LOC101212255 isoform X1 [Cucumis sativus])

HSP 1 Score: 295.0 bits (754), Expect = 5.5e-76
Identity = 150/207 (72.46%), Postives = 163/207 (78.74%), Query Frame = 0


Query: 27   QMYGMDYFDTFSHVAKLISIRLFLSMAATHNWPLHQLDIKNVLLHSDLPEDVYMEQPPGF 86
            Q+YG DY DTFS VAKL SIRLFLSMAAT+ W LHQLDIKN  LH DL E+VYMEQPPGF
Sbjct: 924  QIYGTDYSDTFSPVAKLTSIRLFLSMAATNKWSLHQLDIKNAFLHGDLQEEVYMEQPPGF 983

Query: 87   VAQGESGKVCCLPQSLCELKQSPHGWFGKLNQALEYFSMKKSTYDNFVFYRRSDNGITLF 146
            VAQGES KVC L +SL  LKQSP  WFGK +QAL  F MKKST D+ VFYRRS+ GI L 
Sbjct: 984  VAQGESDKVCRLRKSLYGLKQSPRAWFGKFSQALVCFGMKKSTSDHSVFYRRSEKGIVLL 1043

Query: 147  VVYVDDVVITGNDVLGISPLKTFLQGLFHTTNLERLKYFLGIEVMTSKKGIYPSQWKYAF 206
            VVYVDD+VITGND LGIS LKTFLQG F+T +L +LKYFLGIEVM SKKGIY SQ KY  
Sbjct: 1044 VVYVDDIVITGNDALGISSLKTFLQGQFYTKDLGQLKYFLGIEVMRSKKGIYLSQRKYVL 1103

Query: 207  DLLFEIGKLGIKPCSTSMIPNFRLAKE 234
            DLL E GKLG KP  T M+PN +L KE
Sbjct: 1104 DLLSETGKLGAKPSGTPMMPNQQLVKE 1130

[Close]

BLAST of Cmc08g0227241 vs. NCBI nr
Match: XP_031744755.1 (uncharacterized protein LOC101212255 isoform X3 [Cucumis sativus])

HSP 1 Score: 295.0 bits (754), Expect = 5.5e-76
Identity = 150/207 (72.46%), Postives = 163/207 (78.74%), Query Frame = 0


Query: 27   QMYGMDYFDTFSHVAKLISIRLFLSMAATHNWPLHQLDIKNVLLHSDLPEDVYMEQPPGF 86
            Q+YG DY DTFS VAKL SIRLFLSMAAT+ W LHQLDIKN  LH DL E+VYMEQPPGF
Sbjct: 876  QIYGTDYSDTFSPVAKLTSIRLFLSMAATNKWSLHQLDIKNAFLHGDLQEEVYMEQPPGF 935

Query: 87   VAQGESGKVCCLPQSLCELKQSPHGWFGKLNQALEYFSMKKSTYDNFVFYRRSDNGITLF 146
            VAQGES KVC L +SL  LKQSP  WFGK +QAL  F MKKST D+ VFYRRS+ GI L 
Sbjct: 936  VAQGESDKVCRLRKSLYGLKQSPRAWFGKFSQALVCFGMKKSTSDHSVFYRRSEKGIVLL 995

Query: 147  VVYVDDVVITGNDVLGISPLKTFLQGLFHTTNLERLKYFLGIEVMTSKKGIYPSQWKYAF 206
            VVYVDD+VITGND LGIS LKTFLQG F+T +L +LKYFLGIEVM SKKGIY SQ KY  
Sbjct: 996  VVYVDDIVITGNDALGISSLKTFLQGQFYTKDLGQLKYFLGIEVMRSKKGIYLSQRKYVL 1055

Query: 207  DLLFEIGKLGIKPCSTSMIPNFRLAKE 234
            DLL E GKLG KP  T M+PN +L KE
Sbjct: 1056 DLLSETGKLGAKPSGTPMMPNQQLVKE 1082

[Close]

BLAST of Cmc08g0227241 vs. NCBI nr
Match: XP_031744756.1 (uncharacterized protein LOC101212255 isoform X4 [Cucumis sativus] >XP_031744757.1 uncharacterized protein LOC101212255 isoform X4 [Cucumis sativus])

HSP 1 Score: 295.0 bits (754), Expect = 5.5e-76
Identity = 150/207 (72.46%), Postives = 163/207 (78.74%), Query Frame = 0


Query: 27  QMYGMDYFDTFSHVAKLISIRLFLSMAATHNWPLHQLDIKNVLLHSDLPEDVYMEQPPGF 86
           Q+YG DY DTFS VAKL SIRLFLSMAAT+ W LHQLDIKN  LH DL E+VYMEQPPGF
Sbjct: 738 QIYGTDYSDTFSPVAKLTSIRLFLSMAATNKWSLHQLDIKNAFLHGDLQEEVYMEQPPGF 797

Query: 87  VAQGESGKVCCLPQSLCELKQSPHGWFGKLNQALEYFSMKKSTYDNFVFYRRSDNGITLF 146
           VAQGES KVC L +SL  LKQSP  WFGK +QAL  F MKKST D+ VFYRRS+ GI L 
Sbjct: 798 VAQGESDKVCRLRKSLYGLKQSPRAWFGKFSQALVCFGMKKSTSDHSVFYRRSEKGIVLL 857

Query: 147 VVYVDDVVITGNDVLGISPLKTFLQGLFHTTNLERLKYFLGIEVMTSKKGIYPSQWKYAF 206
           VVYVDD+VITGND LGIS LKTFLQG F+T +L +LKYFLGIEVM SKKGIY SQ KY  
Sbjct: 858 VVYVDDIVITGNDALGISSLKTFLQGQFYTKDLGQLKYFLGIEVMRSKKGIYLSQRKYVL 917

Query: 207 DLLFEIGKLGIKPCSTSMIPNFRLAKE 234
           DLL E GKLG KP  T M+PN +L KE
Sbjct: 918 DLLSETGKLGAKPSGTPMMPNQQLVKE 944

[Close]

BLAST of Cmc08g0227241 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 8.3e-35
Identity = 79/205 (38.54%), Postives = 109/205 (53.17%), Query Frame = 0


Query: 27   QMYGMDYFDTFSHVAKLISIRLFLSMAATHNWPLHQLDIKNVLLHSDLPEDVYMEQPPGF 86
            Q  G+DY +TFS V K  SIR+ L +A   +WP+ QLD+ N  L   L +DVYM QPPGF
Sbjct: 1028 QRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPGF 1087

Query: 87   VAQGESGKVCCLPQSLCELKQSPHGWFGKLNQALEYFSMKKSTYDNFVFYRRSDNGITLF 146
            + +     VC L ++L  LKQ+P  W+ +L   L       S  D  +F  +    I   
Sbjct: 1088 IDKDRPNYVCKLRKALYGLKQAPRAWYVELRNYLLTIGFVNSVSDTSLFVLQRGKSIVYM 1147

Query: 147  VVYVDDVVITGNDVLGISPLKTFLQGLFHTTNLERLKYFLGIEVMTSKKGIYPSQWKYAF 206
            +VYVDD++ITGND   +      L   F   + E L YFLGIE      G++ SQ +Y  
Sbjct: 1148 LVYVDDILITGNDPTLLHNTLDNLSQRFSVKDHEELHYFLGIEAKRVPTGLHLSQRRYIL 1207

Query: 207  DLLFEIGKLGIKPCSTSMIPNFRLA 232
            DLL     +  KP +T M P+ +L+
Sbjct: 1208 DLLARTNMITAKPVTTPMAPSPKLS 1232

[Close]

BLAST of Cmc08g0227241 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 2.1e-33
Identity = 78/204 (38.24%), Postives = 108/204 (52.94%), Query Frame = 0


Query: 27   QMYGMDYFDTFSHVAKLISIRLFLSMAATHNWPLHQLDIKNVLLHSDLPEDVYMEQPPGF 86
            Q  G+DY +TFS V K  SIR+ L +A   +WP+ QLD+ N  L   L ++VYM QPPGF
Sbjct: 1011 QRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDEVYMSQPPGF 1070

Query: 87   VAQGESGKVCCLPQSLCELKQSPHGWFGKLNQALEYFSMKKSTYDNFVFYRRSDNGITLF 146
            V +     VC L +++  LKQ+P  W+ +L   L       S  D  +F  +    I   
Sbjct: 1071 VDKDRPDYVCRLRKAIYGLKQAPRAWYVELRTYLLTVGFVNSISDTSLFVLQRGRSIIYM 1130

Query: 147  VVYVDDVVITGNDVLGISPLKTFLQGLFHTTNLERLKYFLGIEVMTSKKGIYPSQWKYAF 206
            +VYVDD++ITGND + +      L   F     E L YFLGIE     +G++ SQ +Y  
Sbjct: 1131 LVYVDDILITGNDTVLLKHTLDALSQRFSVKEHEDLHYFLGIEAKRVPQGLHLSQRRYTL 1190

Query: 207  DLLFEIGKLGIKPCSTSMIPNFRL 231
            DLL     L  KP +T M  + +L
Sbjct: 1191 DLLARTNMLTAKPVATPMATSPKL 1214

[Close]

BLAST of Cmc08g0227241 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 2.4e-29
Identity = 77/211 (36.49%), Postives = 122/211 (57.82%), Query Frame = 0


Query: 27   QMYGMDYFDTFSHVAKLISIRLFLSMAATHNWPLHQLDIKNVLLHSDLPEDVYMEQPPGF 86
            Q  G+D+ + FS V K+ SIR  LS+AA+ +  + QLD+K   LH DL E++YMEQP GF
Sbjct: 885  QKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGF 944

Query: 87   VAQGESGKVCCLPQSLCELKQSPHGWFGKLNQALEYFSMKKSTYDNFVFYRR-SDNGITL 146
               G+   VC L +SL  LKQ+P  W+ K +  ++  +  K+  D  V+++R S+N   +
Sbjct: 945  EVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNFII 1004

Query: 147  FVVYVDDVVITGNDVLGISPLKTFLQGLFHTTNLERLKYFLGIEVM---TSKKGIYPSQW 206
             ++YVDD++I G D   I+ LK  L   F   +L   +  LG++++   TS+K ++ SQ 
Sbjct: 1005 LLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRERTSRK-LWLSQE 1064

Query: 207  KYAFDLLFEIGKLGIKPCSTSMIPNFRLAKE 234
            KY   +L        KP ST +  + +L+K+
Sbjct: 1065 KYIERVLERFNMKNAKPVSTPLAGHLKLSKK 1094

[Close]

BLAST of Cmc08g0227241 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 112.1 bits (279), Expect = 8.7e-24
Identity = 65/202 (32.18%), Postives = 104/202 (51.49%), Query Frame = 0


Query: 27   QMYGMDYFDTFSHVAKLISIRLFLSMAATHNWPLHQLDIKNVLLHSDLPEDVYMEQPPGF 86
            Q Y +DY +TF+ VA++ S R  LS+   +N  +HQ+D+K   L+  L E++YM  P G 
Sbjct: 965  QKYQIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQGI 1024

Query: 87   VAQGESGKVCCLPQSLCELKQSPHGWFGKLNQALEYFSMKKSTYDN--FVFYRRSDNGIT 146
                 S  VC L +++  LKQ+   WF    QAL+      S+ D   ++  + + N   
Sbjct: 1025 SC--NSDNVCKLNKAIYGLKQAARCWFEVFEQALKECEFVNSSVDRCIYILDKGNINENI 1084

Query: 147  LFVVYVDDVVITGNDVLGISPLKTFLQGLFHTTNLERLKYFLGIEVMTSKKGIYPSQWKY 206
              ++YVDDVVI   D+  ++  K +L   F  T+L  +K+F+GI +   +  IY SQ  Y
Sbjct: 1085 YVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRIEMQEDKIYLSQSAY 1144

Query: 207  AFDLLFEIGKLGIKPCSTSMIP 227
               +L    K  ++ C+    P
Sbjct: 1145 VKKIL---SKFNMENCNAVSTP 1161

[Close]

BLAST of Cmc08g0227241 vs. ExPASy Swiss-Prot
Match: P25600 (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5A PE=5 SV=2)

HSP 1 Score: 68.2 bits (165), Expect = 1.4e-10
Identity = 43/170 (25.29%), Postives = 77/170 (45.29%), Query Frame = 0


Query: 63  LDIKNVLLHSDLPEDVYMEQPPGFVAQGESGKVCCLPQSLCELKQSPHGWFGKLNQALEY 122
           +D+    L+S + E +Y++QPPGFV +     V  L   +  LKQ+P  W   +N  L+ 
Sbjct: 1   MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKK 60

Query: 123 FSMKKSTYDNFVFYRRSDNGITLFVVYVDDVVITGNDVLGISPLKTFLQGLFHTTNLERL 182
               +   ++ +++R + +G     VYVDD+++          +K  L  L+   +L ++
Sbjct: 61  IGFCRHEGEHGLYFRSTSDGPIYIAVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGKV 120

Query: 183 KYFLGIEVMTSKKGIYPSQWKYAFDLLFEIGKLGIKPCSTSMIPNFRLAK 233
             FLG+ +  S  G          D+   +     K  S S I  F+L +
Sbjct: 121 DKFLGLNIHQSSNG----------DITLSLQDYIAKAASESEINTFKLTQ 160

[Close]

BLAST of Cmc08g0227241 vs. ExPASy TrEMBL
Match: A0A438G5Y3 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_1743 PE=4 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 1.1e-69
Identity = 131/207 (63.29%), Postives = 157/207 (75.85%), Query Frame = 0


Query: 27  QMYGMDYFDTFSHVAKLISIRLFLSMAATHNWPLHQLDIKNVLLHSDLPEDVYMEQPPGF 86
           Q YG+DY DTFS VA+L S+RL +S+AA+ +WPLHQ+DIKN  LH DL E+VYMEQPPGF
Sbjct: 341 QTYGVDYSDTFSPVARLASVRLIISIAASQHWPLHQVDIKNAFLHGDLQEEVYMEQPPGF 400

Query: 87  VAQGESGKVCCLPQSLCELKQSPHGWFGKLNQALEYFSMKKSTYDNFVFYRRSDNGITLF 146
           VAQGE GKVC L +SL  LKQSP  WFGK ++ ++ F M KS  D+ VFYR+S NGI L 
Sbjct: 401 VAQGEYGKVCHLRKSLYGLKQSPRAWFGKFSEVIQEFGMNKSKVDHSVFYRQSANGIILL 460

Query: 147 VVYVDDVVITGNDVLGISPLKTFLQGLFHTTNLERLKYFLGIEVMTSKKGIYPSQWKYAF 206
           VVY+DD+VITG+D  GIS LK F+   FHT +L  LKYFLG+EV  SK+GI+ SQ KY  
Sbjct: 461 VVYIDDIVITGSDCAGISSLKLFMHSKFHTKDLGELKYFLGVEVSRSKRGIFLSQRKYVL 520

Query: 207 DLLFEIGKLGIKPCSTSMIPNFRLAKE 234
           DLL EIGK+  KPCSTSMIPN  L K+
Sbjct: 521 DLLTEIGKMEAKPCSTSMIPNVHLTKD 547

[Close]

BLAST of Cmc08g0227241 vs. ExPASy TrEMBL
Match: Q6L3Q0 (Polyprotein, putative OS=Solanum demissum OX=50514 GN=SDM1_42t00018 PE=4 SV=2)

HSP 1 Score: 265.0 bits (676), Expect = 3.0e-67
Identity = 130/207 (62.80%), Postives = 154/207 (74.40%), Query Frame = 0


Query: 27   QMYGMDYFDTFSHVAKLISIRLFLSMAATHNWPLHQLDIKNVLLHSDLPEDVYMEQPPGF 86
            Q YG+DY DTFS VAKL S+RLF+S+AA+ NWPLHQL IKN  LH DL E+VYMEQPPGF
Sbjct: 985  QTYGVDYSDTFSPVAKLTSVRLFISLAASQNWPLHQLAIKNAFLHGDLQEEVYMEQPPGF 1044

Query: 87   VAQGESGKVCCLPQSLCELKQSPHGWFGKLNQALEYFSMKKSTYDNFVFYRRSDNGITLF 146
            VAQGE+GKVC L + L  LKQSP  WFGK ++ ++ F + KS  D+ VFYR+S  GI L 
Sbjct: 1045 VAQGENGKVCHLKKPLYGLKQSPRAWFGKFSEVVQKFGLTKSNCDHSVFYRQSAVGIILL 1104

Query: 147  VVYVDDVVITGNDVLGISPLKTFLQGLFHTTNLERLKYFLGIEVMTSKKGIYPSQWKYAF 206
            VVYVDD+VIT +D  GIS LK FL  +FHT +L +LKYFLGIEV  SKKGI+ SQ KY  
Sbjct: 1105 VVYVDDIVITRSDYAGISSLKLFLHSMFHTKDLGQLKYFLGIEVSRSKKGIFLSQRKYIL 1164

Query: 207  DLLFEIGKLGIKPCSTSMIPNFRLAKE 234
            DLL E GK   KPCST M+PN +L  +
Sbjct: 1165 DLLEETGKSAAKPCSTPMVPNTQLTND 1191

[Close]

BLAST of Cmc08g0227241 vs. ExPASy TrEMBL
Match: A0A438GNW5 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_2824 PE=4 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 3.9e-67
Identity = 127/204 (62.25%), Postives = 154/204 (75.49%), Query Frame = 0


Query: 27  QMYGMDYFDTFSHVAKLISIRLFLSMAATHNWPLHQLDIKNVLLHSDLPEDVYMEQPPGF 86
           Q YG+DY DTFS VAKL S+RLF+S+AA+  W +HQLDIKN  LH DL E+VY+EQPPGF
Sbjct: 330 QTYGVDYSDTFSPVAKLNSVRLFISIAASQQWMIHQLDIKNAFLHGDLEEEVYLEQPPGF 389

Query: 87  VAQGESGKVCCLPQSLCELKQSPHGWFGKLNQALEYFSMKKSTYDNFVFYRRSDNGITLF 146
           V QGE GKVCCL ++L  LKQSPH WFGK ++ ++ F M KS  D+ VFY++S  GI L 
Sbjct: 390 VDQGEYGKVCCLKKALYGLKQSPHAWFGKFSKEIQAFGMNKSEKDHSVFYKKSAAGIILL 449

Query: 147 VVYVDDVVITGNDVLGISPLKTFLQGLFHTTNLERLKYFLGIEVMTSKKGIYPSQWKYAF 206
           VVYVDD+VIT ND  GIS LKTF+   FHT +L  LKYFLGIEV+ SKKG++ SQ KY  
Sbjct: 450 VVYVDDIVITRNDHAGISDLKTFMHSKFHTKDLGELKYFLGIEVLRSKKGMFLSQRKYVL 509

Query: 207 DLLFEIGKLGIKPCSTSMIPNFRL 231
           DLL E GK+  KPC+T M+PN +L
Sbjct: 510 DLLKETGKIEAKPCTTPMVPNVQL 533

[Close]

BLAST of Cmc08g0227241 vs. ExPASy TrEMBL
Match: A5AVD6 (CCHC-type domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_033947 PE=4 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 5.0e-67
Identity = 127/204 (62.25%), Postives = 153/204 (75.00%), Query Frame = 0


Query: 27   QMYGMDYFDTFSHVAKLISIRLFLSMAATHNWPLHQLDIKNVLLHSDLPEDVYMEQPPGF 86
            Q YG+DY DTFS VAKL S+RLF+S+ A+  W +HQLDIKN  LH DL E+VY+EQPPGF
Sbjct: 855  QTYGVDYSDTFSPVAKLNSVRLFISIVASQQWMIHQLDIKNAFLHGDLEEEVYLEQPPGF 914

Query: 87   VAQGESGKVCCLPQSLCELKQSPHGWFGKLNQALEYFSMKKSTYDNFVFYRRSDNGITLF 146
            VAQGE GKVCCL ++L  LKQSPH WFGK ++ ++ F M KS  D+ VFY++S  GI L 
Sbjct: 915  VAQGEYGKVCCLKKALYGLKQSPHAWFGKFSKEIQAFGMNKSEKDHSVFYKKSVVGIILL 974

Query: 147  VVYVDDVVITGNDVLGISPLKTFLQGLFHTTNLERLKYFLGIEVMTSKKGIYPSQWKYAF 206
            VVYVDD+VI GND  GIS LK F+   FHT +L  LKYFLGIEV  SKKG++ SQ KY  
Sbjct: 975  VVYVDDIVIIGNDHAGISDLKAFMHSKFHTKDLGELKYFLGIEVSRSKKGMFLSQRKYVL 1034

Query: 207  DLLFEIGKLGIKPCSTSMIPNFRL 231
            DLL E GK+  KPC+TSM+PN +L
Sbjct: 1035 DLLKETGKIEAKPCTTSMVPNVQL 1058

[Close]

BLAST of Cmc08g0227241 vs. ExPASy TrEMBL
Match: A0A438HAW7 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_2613 PE=4 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 1.9e-66
Identity = 127/204 (62.25%), Postives = 153/204 (75.00%), Query Frame = 0


Query: 27  QMYGMDYFDTFSHVAKLISIRLFLSMAATHNWPLHQLDIKNVLLHSDLPEDVYMEQPPGF 86
           Q YG+DYFDTFS VAKL S+RLF+S+AA+  W +HQLDIKN  LH DL E+VY+EQPPGF
Sbjct: 403 QTYGVDYFDTFSPVAKLNSVRLFISIAASQQWMIHQLDIKNAFLHGDLEEEVYLEQPPGF 462

Query: 87  VAQGESGKVCCLPQSLCELKQSPHGWFGKLNQALEYFSMKKSTYDNFVFYRRSDNGITLF 146
           VAQGE GKVC L ++L  L QSP  WFGK ++ ++ F M KS  D+ VFY++S  GI L 
Sbjct: 463 VAQGEYGKVCRLKKALYGLNQSPRAWFGKFSKEIQAFGMNKSEKDHSVFYKKSAAGIILL 522

Query: 147 VVYVDDVVITGNDVLGISPLKTFLQGLFHTTNLERLKYFLGIEVMTSKKGIYPSQWKYAF 206
           VVYVDD+VITGND  GIS LKTF+   FHT +L  LKYFLGIEV  SKKG++ SQ KY  
Sbjct: 523 VVYVDDIVITGNDHAGISDLKTFMHSKFHTKDLGELKYFLGIEVSRSKKGMFLSQRKYVL 582

Query: 207 DLLFEIGKLGIKPCSTSMIPNFRL 231
           DLL E GK+  KPC+T M+PN +L
Sbjct: 583 DLLKETGKIEAKPCTTPMVPNVQL 606

[Close]

BLAST of Cmc08g0227241 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 156.8 bits (395), Expect = 2.2e-38
Identity = 87/205 (42.44%), Postives = 122/205 (59.51%), Query Frame = 0


Query: 27  QMYGMDYFDTFSHVAKLISIRLFLSMAATHNWPLHQLDIKNVLLHSDLPEDVYMEQPPGF 86
           Q  G+D+ +TFS V KL S++L L+++A +N+ LHQLDI N  L+ DL E++YM+ PPG+
Sbjct: 157 QQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGY 216

Query: 87  VA-QGES---GKVCCLPQSLCELKQSPHGWFGKLNQALEYFSMKKSTYDNFVFYRRSDNG 146
            A QG+S     VC L +S+  LKQ+   WF K +  L  F   +S  D+  F + +   
Sbjct: 217 AARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSDHTYFLKITATL 276

Query: 147 ITLFVVYVDDVVITGNDVLGISPLKTFLQGLFHTTNLERLKYFLGIEVMTSKKGIYPSQW 206
               +VYVDD++I  N+   +  LK+ L+  F   +L  LKYFLG+E+  S  GI   Q 
Sbjct: 277 FLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIARSAAGINICQR 336

Query: 207 KYAFDLLFEIGKLGIKPCSTSMIPN 228
           KYA DLL E G LG KP S  M P+
Sbjct: 337 KYALDLLDETGLLGCKPSSVPMDPS 361

[Close]

BLAST of Cmc08g0227241 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 55.8 bits (133), Expect = 5.2e-08
Identity = 29/78 (37.18%), Postives = 45/78 (57.69%), Query Frame = 0


Query: 147 VVYVDDVVITGNDVLGISPLKTFLQGLFHTTNLERLKYFLGIEVMTSKKGIYPSQWKYAF 206
           ++YVDD+++TG+    ++ L   L   F   +L  + YFLGI++ T   G++ SQ KYA 
Sbjct: 4   LLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAE 63

Query: 207 DLLFEIGKLGIKPCSTSM 225
            +L   G L  KP ST +
Sbjct: 64  QILNNAGMLDCKPMSTPL 81

The following BLAST results are available for this feature:

BLAST of Cmc08g0227241 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031744754.1	5.5e-76	72.46	uncharacterized protein LOC101212255 isoform X2 [Cucumis sativus]	[more]
XP_031744758.1	5.5e-76	72.46	uncharacterized protein LOC101212255 isoform X5 [Cucumis sativus]	[more]
XP_031744753.1	5.5e-76	72.46	uncharacterized protein LOC101212255 isoform X1 [Cucumis sativus]	[more]
XP_031744755.1	5.5e-76	72.46	uncharacterized protein LOC101212255 isoform X3 [Cucumis sativus]	[more]
XP_031744756.1	5.5e-76	72.46	uncharacterized protein LOC101212255 isoform X4 [Cucumis sativus] >XP_031744757....	[more]

BLAST of Cmc08g0227241 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94HW2	8.3e-35	38.54	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	2.1e-33	38.24	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P10978	2.4e-29	36.49	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	8.7e-24	32.18	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P25600	1.4e-10	25.29	Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain AT...	[more]

BLAST of Cmc08g0227241 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A438G5Y3	1.1e-69	63.29	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
Q6L3Q0	3.0e-67	62.80	Polyprotein, putative OS=Solanum demissum OX=50514 GN=SDM1_42t00018 PE=4 SV=2	[more]
A0A438GNW5	3.9e-67	62.25	Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976...	[more]
A5AVD6	5.0e-67	62.25	CCHC-type domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_033947 ...	[more]
A0A438HAW7	1.9e-66	62.25	Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976...	[more]

BLAST of Cmc08g0227241 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	2.2e-38	42.44	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	5.2e-08	37.18	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 23..224 e-value: 4.6E-43 score: 147.6
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 26..224
None	No IPR available	PANTHER	PTHR11439:SF351	CYSTEINE-RICH RLK (RECEPTOR-LIKE PROTEIN KINASE) 8	coord: 26..224
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 46..209

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0227241.1	Cmc08g0227241.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009987	cellular process
molecular_function	GO:0005488	binding