Cmc08g0226811 (gene) Melon (Charmono) v1.1

Overview
NameCmc08g0226811
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionNBS-LRR type resistance protein
LocationCMiso1.1chr08: 19246290 .. 19246658 (+)
RNA-Seq ExpressionCmc08g0226811
SyntenyCmc08g0226811
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCAATCATGGACGAACAAGGATGCTAGACAAAAGTAGCCTTACAATTATAGTAGTGGGTCCAAGTCGTTTCTACAACGACGACATGAGCTCATTGAGAAACGAGGTCAGCCAGTTAACCATGTGGAGTTATTTAGAGAAACACACAATCGGAGTGGTCAATTTGTTTCAAAAGTGGCATAGGATGCACATGTAAGTTCATGCAGTACTCTTGTCTTATTTTGTATTTTTATTTATACCTTCATAGCTTAATTACAAAATTTGGTGCAGAATCAAATGTTGGAACTCTAGTCCTAGCCCACCTCAGAGGTTTCTTAGCCAGTCGAGATCGTTTTGTGCTAGTAGTTTTTCGACCTCATTTTCGTAA

mRNA sequence

ATGAGCAATCATGGACGAACAAGGATGCTAGACAAAAGTAGCCTTACAATTATAGTAGTGGGTCCAAGTCGTTTCTACAACGACGACATGAGCTCATTGAGAAACGAGGTCAGCCAGTTAACCATGTGGAGTTATTTAGAGAAACACACAATCGGAGTGGTCAATTTGTTTCAAAAGTGGCATAGGATGCACATAATCAAATGTTGGAACTCTAGTCCTAGCCCACCTCAGAGGTTTCTTAGCCAGTCGAGATCGTTTTGTGCTAGTAGTTTTTCGACCTCATTTTCGTAA

Coding sequence (CDS)

ATGAGCAATCATGGACGAACAAGGATGCTAGACAAAAGTAGCCTTACAATTATAGTAGTGGGTCCAAGTCGTTTCTACAACGACGACATGAGCTCATTGAGAAACGAGGTCAGCCAGTTAACCATGTGGAGTTATTTAGAGAAACACACAATCGGAGTGGTCAATTTGTTTCAAAAGTGGCATAGGATGCACATAATCAAATGTTGGAACTCTAGTCCTAGCCCACCTCAGAGGTTTCTTAGCCAGTCGAGATCGTTTTGTGCTAGTAGTTTTTCGACCTCATTTTCGTAA

Protein sequence

MSNHGRTRMLDKSSLTIIVVGPSRFYNDDMSSLRNEVSQLTMWSYLEKHTIGVVNLFQKWHRMHIIKCWNSSPSPPQRFLSQSRSFCASSFSTSFS
Homology
BLAST of Cmc08g0226811 vs. NCBI nr
Match: TYK23153.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 114.0 bits (284), Expect = 7.2e-22
Identity = 55/79 (69.62%), Postives = 61/79 (77.22%), Query Frame = 0

Query: 2   SNHGRTRMLDKSSLTIIVVGPSRFYNDDMSSLRNEVSQLTMWSYLEKHTIGVVNLFQKWH 61
           +NH RTR+LDKSSLTIIV GPSRFYND  SSL NEVSQLT+WSY  KH +GV   F++  
Sbjct: 104 TNHRRTRLLDKSSLTIIVAGPSRFYNDSTSSLSNEVSQLTVWSYSRKHMLGVARSFRR-- 163

Query: 62  RMHIIKCWNSSPSPPQRFL 81
               IKCWNSSPSPPQR L
Sbjct: 164 ----IKCWNSSPSPPQRIL 176

BLAST of Cmc08g0226811 vs. NCBI nr
Match: KAA0062189.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 106.3 bits (264), Expect = 1.5e-19
Identity = 51/83 (61.45%), Postives = 62/83 (74.70%), Query Frame = 0

Query: 1   MSNHGRTRMLDKSSLTIIVVGPSRFYNDDMSSLRNEVSQLTMWSYLEKHTIGVVNLFQKW 60
           MSNHGRTR+LD+SSLTII VG +RFYND  S LR + SQ TMWS  +KHT  +    ++ 
Sbjct: 29  MSNHGRTRLLDRSSLTIIAVGKNRFYNDSTSLLRRKESQSTMWSCFKKHTFELGRSCRRP 88

Query: 61  HRMHIIKCWNSSPSPPQRFLSQS 84
            RMHIIKCWNS+P+ PQR +S S
Sbjct: 89  QRMHIIKCWNSNPNLPQRVVSHS 111

BLAST of Cmc08g0226811 vs. NCBI nr
Match: KAA0058246.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 104.0 bits (258), Expect = 7.4e-19
Identity = 51/82 (62.20%), Postives = 61/82 (74.39%), Query Frame = 0

Query: 2   SNHGRTRMLDKSSLTIIVVGPSRFYNDDMSSLRNEVSQLTMWSYLEKHTIGVVNLFQKWH 61
           SNHGRTR+LD+SSLTIIV GPSRFYND+ SS R + S   +WS  EKHT  +    ++  
Sbjct: 171 SNHGRTRLLDRSSLTIIVAGPSRFYNDNTSSQREKESWSIVWSCSEKHTFELERSCRRPP 230

Query: 62  RMHIIKCWNSSPSPPQRFLSQS 84
           RMHIIKCWNS+PS PQR +S S
Sbjct: 231 RMHIIKCWNSNPSLPQRVVSHS 252

BLAST of Cmc08g0226811 vs. NCBI nr
Match: TYK28852.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 103.2 bits (256), Expect = 1.3e-18
Identity = 50/82 (60.98%), Postives = 62/82 (75.61%), Query Frame = 0

Query: 2   SNHGRTRMLDKSSLTIIVVGPSRFYNDDMSSLRNEVSQLTMWSYLEKHTIGVVNLFQKWH 61
           SNHG+TR+LD+SSLTIIV GPSRFYND MSSL+ E SQ  +W+   KHT  + +  ++  
Sbjct: 111 SNHGQTRLLDRSSLTIIVAGPSRFYNDSMSSLKEEDSQSIVWNCFGKHTFELGHSCRRPP 170

Query: 62  RMHIIKCWNSSPSPPQRFLSQS 84
           RM IIKCWNS+PS PQR +S S
Sbjct: 171 RMRIIKCWNSNPSLPQRVVSHS 192

BLAST of Cmc08g0226811 vs. NCBI nr
Match: ADN34241.1 (NBS-LRR type resistance protein [Cucumis melo subsp. melo])

HSP 1 Score: 100.1 bits (248), Expect = 1.1e-17
Identity = 48/82 (58.54%), Postives = 61/82 (74.39%), Query Frame = 0

Query: 2  SNHGRTRMLDKSSLTIIVVGPSRFYNDDMSSLRNEVSQLTMWSYLEKHTIGVVNLFQKWH 61
          SNH RTR+LD+SSLTIIV GPS FYND MSSL+ E S+  +W+  EKHT  + +  ++  
Sbjct: 18 SNHRRTRLLDRSSLTIIVAGPSHFYNDSMSSLKEEGSRSIVWNCSEKHTFELGHSCRRLP 77

Query: 62 RMHIIKCWNSSPSPPQRFLSQS 84
          RM IIKCWNS+PS PQR ++ S
Sbjct: 78 RMRIIKCWNSNPSLPQRIVTHS 99

BLAST of Cmc08g0226811 vs. ExPASy TrEMBL
Match: A0A5D3DHV0 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G001660 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 3.5e-22
Identity = 55/79 (69.62%), Postives = 61/79 (77.22%), Query Frame = 0

Query: 2   SNHGRTRMLDKSSLTIIVVGPSRFYNDDMSSLRNEVSQLTMWSYLEKHTIGVVNLFQKWH 61
           +NH RTR+LDKSSLTIIV GPSRFYND  SSL NEVSQLT+WSY  KH +GV   F++  
Sbjct: 104 TNHRRTRLLDKSSLTIIVAGPSRFYNDSTSSLSNEVSQLTVWSYSRKHMLGVARSFRR-- 163

Query: 62  RMHIIKCWNSSPSPPQRFL 81
               IKCWNSSPSPPQR L
Sbjct: 164 ----IKCWNSSPSPPQRIL 176

BLAST of Cmc08g0226811 vs. ExPASy TrEMBL
Match: A0A5A7V928 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G005820 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 7.2e-20
Identity = 51/83 (61.45%), Postives = 62/83 (74.70%), Query Frame = 0

Query: 1   MSNHGRTRMLDKSSLTIIVVGPSRFYNDDMSSLRNEVSQLTMWSYLEKHTIGVVNLFQKW 60
           MSNHGRTR+LD+SSLTII VG +RFYND  S LR + SQ TMWS  +KHT  +    ++ 
Sbjct: 29  MSNHGRTRLLDRSSLTIIAVGKNRFYNDSTSLLRRKESQSTMWSCFKKHTFELGRSCRRP 88

Query: 61  HRMHIIKCWNSSPSPPQRFLSQS 84
            RMHIIKCWNS+P+ PQR +S S
Sbjct: 89  QRMHIIKCWNSNPNLPQRVVSHS 111

BLAST of Cmc08g0226811 vs. ExPASy TrEMBL
Match: A0A5A7UVP6 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G005710 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 3.6e-19
Identity = 51/82 (62.20%), Postives = 61/82 (74.39%), Query Frame = 0

Query: 2   SNHGRTRMLDKSSLTIIVVGPSRFYNDDMSSLRNEVSQLTMWSYLEKHTIGVVNLFQKWH 61
           SNHGRTR+LD+SSLTIIV GPSRFYND+ SS R + S   +WS  EKHT  +    ++  
Sbjct: 171 SNHGRTRLLDRSSLTIIVAGPSRFYNDNTSSQREKESWSIVWSCSEKHTFELERSCRRPP 230

Query: 62  RMHIIKCWNSSPSPPQRFLSQS 84
           RMHIIKCWNS+PS PQR +S S
Sbjct: 231 RMHIIKCWNSNPSLPQRVVSHS 252

BLAST of Cmc08g0226811 vs. ExPASy TrEMBL
Match: A0A5D3DZ15 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold303G00610 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 6.1e-19
Identity = 50/82 (60.98%), Postives = 62/82 (75.61%), Query Frame = 0

Query: 2   SNHGRTRMLDKSSLTIIVVGPSRFYNDDMSSLRNEVSQLTMWSYLEKHTIGVVNLFQKWH 61
           SNHG+TR+LD+SSLTIIV GPSRFYND MSSL+ E SQ  +W+   KHT  + +  ++  
Sbjct: 111 SNHGQTRLLDRSSLTIIVAGPSRFYNDSMSSLKEEDSQSIVWNCFGKHTFELGHSCRRPP 170

Query: 62  RMHIIKCWNSSPSPPQRFLSQS 84
           RM IIKCWNS+PS PQR +S S
Sbjct: 171 RMRIIKCWNSNPSLPQRVVSHS 192

BLAST of Cmc08g0226811 vs. ExPASy TrEMBL
Match: E5GCP2 (NBS-LRR type resistance protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 5.2e-18
Identity = 48/82 (58.54%), Postives = 61/82 (74.39%), Query Frame = 0

Query: 2  SNHGRTRMLDKSSLTIIVVGPSRFYNDDMSSLRNEVSQLTMWSYLEKHTIGVVNLFQKWH 61
          SNH RTR+LD+SSLTIIV GPS FYND MSSL+ E S+  +W+  EKHT  + +  ++  
Sbjct: 18 SNHRRTRLLDRSSLTIIVAGPSHFYNDSMSSLKEEGSRSIVWNCSEKHTFELGHSCRRLP 77

Query: 62 RMHIIKCWNSSPSPPQRFLSQS 84
          RM IIKCWNS+PS PQR ++ S
Sbjct: 78 RMRIIKCWNSNPSLPQRIVTHS 99

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK23153.17.2e-2269.62NBS-LRR type resistance protein [Cucumis melo var. makuwa][more]
KAA0062189.11.5e-1961.45NBS-LRR type resistance protein [Cucumis melo var. makuwa][more]
KAA0058246.17.4e-1962.20NBS-LRR type resistance protein [Cucumis melo var. makuwa][more]
TYK28852.11.3e-1860.98NBS-LRR type resistance protein [Cucumis melo var. makuwa][more]
ADN34241.11.1e-1758.54NBS-LRR type resistance protein [Cucumis melo subsp. melo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DHV03.5e-2269.62NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5A7V9287.2e-2061.45NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A5A7UVP63.6e-1962.20NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A5D3DZ156.1e-1960.98NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
E5GCP25.2e-1858.54NBS-LRR type resistance protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc08g0226811.1Cmc08g0226811.1mRNA