Cmc08g0226731 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0226731
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr08: 19127571 .. 19127999 (-)
RNA-Seq Expression	Cmc08g0226731
Synteny	Cmc08g0226731

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCACTAATGTAAGGTATGTTCCAGAACTTAAACATAATCTAATATTTCTTGGTGAATTAGATAAATCAGGTTATACCATAAAACTTGAGAATAGAGTTATGAAAGTTACCAAGGGTTCTTTGATTAAACTGAAGGAAAACAAGAGAAATGCTCTGCATGTGTTGGAAGGTACTGTAGTTTTAGGTAGTGCTGCTATTGCATCAAACAAAGTTACAGATATGTCAATGTTATGGCACAAAAGGCTAGTTCATGTGAGTGAAAGAGGTTTACAAGCATTTTCTCAACAAGGTTTGCTGGGAGGAGTTAAAGATGTTGAACTCCCATTTTGTGAGCATTGTATAATGGGAAAGTCTACCGGAGTAAAGTTTGGCAGAGGGAAGCATACAACCAAAGATATTTTGGATTATATTCATTTAGATTTGTAG

mRNA sequence

ATGCTCACTAATGTAAGGTATGTTCCAGAACTTAAACATAATCTAATATTTCTTGGTGAATTAGATAAATCAGGTTATACCATAAAACTTGAGAATAGAGTTATGAAAGTTACCAAGGGTTCTTTGATTAAACTGAAGGAAAACAAGAGAAATGCTCTGCATGTGTTGGAAGGTACTGTAGTTTTAGGTAGTGCTGCTATTGCATCAAACAAAGTTACAGATATGTCAATGTTATGGCACAAAAGGCTAGTTCATGTGAGTGAAAGAGGTTTACAAGCATTTTCTCAACAAGGTTTGCTGGGAGGAGTTAAAGATGTTGAACTCCCATTTTGTGAGCATTGTATAATGGGAAAGTCTACCGGAGTAAAGTTTGGCAGAGGGAAGCATACAACCAAAGATATTTTGGATTATATTCATTTAGATTTGTAG

Coding sequence (CDS)

ATGCTCACTAATGTAAGGTATGTTCCAGAACTTAAACATAATCTAATATTTCTTGGTGAATTAGATAAATCAGGTTATACCATAAAACTTGAGAATAGAGTTATGAAAGTTACCAAGGGTTCTTTGATTAAACTGAAGGAAAACAAGAGAAATGCTCTGCATGTGTTGGAAGGTACTGTAGTTTTAGGTAGTGCTGCTATTGCATCAAACAAAGTTACAGATATGTCAATGTTATGGCACAAAAGGCTAGTTCATGTGAGTGAAAGAGGTTTACAAGCATTTTCTCAACAAGGTTTGCTGGGAGGAGTTAAAGATGTTGAACTCCCATTTTGTGAGCATTGTATAATGGGAAAGTCTACCGGAGTAAAGTTTGGCAGAGGGAAGCATACAACCAAAGATATTTTGGATTATATTCATTTAGATTTGTAG

Protein sequence

MLTNVRYVPELKHNLIFLGELDKSGYTIKLENRVMKVTKGSLIKLKENKRNALHVLEGTVVLGSAAIASNKVTDMSMLWHKRLVHVSERGLQAFSQQGLLGGVKDVELPFCEHCIMGKSTGVKFGRGKHTTKDILDYIHLDL

Homology

[Close]

BLAST of Cmc08g0226731 vs. NCBI nr
Match: TYK13826.1 (putative polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 233.8 bits (595), Expect = 9.2e-58
Identity = 115/142 (80.99%), Postives = 125/142 (88.03%), Query Frame = 0


Query: 1   MLTNVRYVPELKHNLIFLGELDKSGYTIKLENRVMKVTKGSLIKLKENKRNALHVLEGTV 60
           +LTNVRYVP+LK NLI LGELD+SG TIK EN VMKVTKGSL+KL+   R+ L+VLEGT 
Sbjct: 174 ILTNVRYVPKLKRNLISLGELDRSGCTIKSENGVMKVTKGSLVKLRGTLRHGLYVLEGTT 233

Query: 61  VLGSAAIASNKVTDMSMLWHKRLVHVSERGLQAFSQQGLLGGVKDVELPFCEHCIMGKST 120
           V GSAAIAS KVTDMSMLWHKRL HVSERGLQA SQQGLLGGVK+VELPFCEHCIMGKST
Sbjct: 234 VSGSAAIASGKVTDMSMLWHKRLAHVSERGLQALSQQGLLGGVKNVELPFCEHCIMGKST 293

Query: 121 GVKFGRGKHTTKDILDYIHLDL 143
            VKFG+GKHTTK ILDY+H DL
Sbjct: 294 RVKFGKGKHTTKGILDYVHSDL 315

[Close]

BLAST of Cmc08g0226731 vs. NCBI nr
Match: TYK25306.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 233.8 bits (595), Expect = 9.2e-58
Identity = 115/142 (80.99%), Postives = 125/142 (88.03%), Query Frame = 0


Query: 1   MLTNVRYVPELKHNLIFLGELDKSGYTIKLENRVMKVTKGSLIKLKENKRNALHVLEGTV 60
           +LTNVRYVP+LK NLI LGELD+SG TIK EN VMKVTKGSL+KL+   R+ L+VLEGT 
Sbjct: 344 ILTNVRYVPKLKRNLISLGELDRSGCTIKSENGVMKVTKGSLVKLRGTLRHGLYVLEGTT 403

Query: 61  VLGSAAIASNKVTDMSMLWHKRLVHVSERGLQAFSQQGLLGGVKDVELPFCEHCIMGKST 120
           V GSAAIAS KVTDMSMLWHKRL HVSERGLQA SQQGLLGGVK+VELPFCEHCIMGKST
Sbjct: 404 VSGSAAIASGKVTDMSMLWHKRLAHVSERGLQALSQQGLLGGVKNVELPFCEHCIMGKST 463

Query: 121 GVKFGRGKHTTKDILDYIHLDL 143
            VKFG+GKHTTK ILDY+H DL
Sbjct: 464 RVKFGKGKHTTKGILDYVHSDL 485

[Close]

BLAST of Cmc08g0226731 vs. NCBI nr
Match: KAA0050719.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 233.8 bits (595), Expect = 9.2e-58
Identity = 115/142 (80.99%), Postives = 125/142 (88.03%), Query Frame = 0


Query: 1   MLTNVRYVPELKHNLIFLGELDKSGYTIKLENRVMKVTKGSLIKLKENKRNALHVLEGTV 60
           +LTNVRYVP+LK NLI LGELD+SG TIK EN VMKVTKGSL+KL+   R+ L+VLEGT 
Sbjct: 344 ILTNVRYVPKLKRNLISLGELDRSGCTIKSENGVMKVTKGSLVKLRGTLRHGLYVLEGTT 403

Query: 61  VLGSAAIASNKVTDMSMLWHKRLVHVSERGLQAFSQQGLLGGVKDVELPFCEHCIMGKST 120
           V GSAAIAS KVTDMSMLWHKRL HVSERGLQA SQQGLLGGVK+VELPFCEHCIMGKST
Sbjct: 404 VSGSAAIASGKVTDMSMLWHKRLAHVSERGLQALSQQGLLGGVKNVELPFCEHCIMGKST 463

Query: 121 GVKFGRGKHTTKDILDYIHLDL 143
            VKFG+GKHTTK ILDY+H DL
Sbjct: 464 RVKFGKGKHTTKGILDYVHSDL 485

[Close]

BLAST of Cmc08g0226731 vs. NCBI nr
Match: KAA0047995.1 (retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa])

HSP 1 Score: 232.3 bits (591), Expect = 2.7e-57
Identity = 115/142 (80.99%), Postives = 125/142 (88.03%), Query Frame = 0


Query: 1   MLTNVRYVPELKHNLIFLGELDKSGYTIKLENRVMKVTKGSLIKLKENKRNALHVLEGTV 60
           +LTNVRYVP+LK NLI LGELD+SG TIK EN VMKVTKGSL+KL+   R+ L+VLEGT 
Sbjct: 344 ILTNVRYVPKLKRNLISLGELDRSGCTIKSENGVMKVTKGSLVKLRGTLRHGLYVLEGTT 403

Query: 61  VLGSAAIASNKVTDMSMLWHKRLVHVSERGLQAFSQQGLLGGVKDVELPFCEHCIMGKST 120
           V GSAAIAS KVT+MSMLWHKRL HVSERGLQA SQQGLLGGVK+VELPFCEHCIMGKST
Sbjct: 404 VSGSAAIASGKVTNMSMLWHKRLAHVSERGLQALSQQGLLGGVKNVELPFCEHCIMGKST 463

Query: 121 GVKFGRGKHTTKDILDYIHLDL 143
            VKFG+GKHTTK ILDYIH DL
Sbjct: 464 RVKFGKGKHTTKGILDYIHSDL 485

[Close]

BLAST of Cmc08g0226731 vs. NCBI nr
Match: KAA0043826.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 229.9 bits (585), Expect = 1.3e-56
Identity = 114/142 (80.28%), Postives = 123/142 (86.62%), Query Frame = 0


Query: 1   MLTNVRYVPELKHNLIFLGELDKSGYTIKLENRVMKVTKGSLIKLKENKRNALHVLEGTV 60
           +LTNV YVP+LK NLI LGELD+SG TIK EN VMKVTKGSL+KLK   R+ L+VLEGT 
Sbjct: 234 ILTNVLYVPKLKRNLISLGELDRSGCTIKSENGVMKVTKGSLVKLKGTLRHGLYVLEGTT 293

Query: 61  VLGSAAIASNKVTDMSMLWHKRLVHVSERGLQAFSQQGLLGGVKDVELPFCEHCIMGKST 120
           V GSAAIAS KVTDMSMLWHKRL HVSERGLQA SQQGLLGGVK+VELPFCEHCIMGKST
Sbjct: 294 VSGSAAIASGKVTDMSMLWHKRLAHVSERGLQALSQQGLLGGVKNVELPFCEHCIMGKST 353

Query: 121 GVKFGRGKHTTKDILDYIHLDL 143
            VKFG+GKH TK ILDY+H DL
Sbjct: 354 RVKFGKGKHITKGILDYVHSDL 375

[Close]

BLAST of Cmc08g0226731 vs. ExPASy Swiss-Prot
Match: P93293 (Uncharacterized mitochondrial protein AtMg00300 OS=Arabidopsis thaliana OX=3702 GN=AtMg00300 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.2e-20
Identity = 48/109 (44.04%), Postives = 69/109 (63.30%), Query Frame = 0


Query: 34  VMKVTKGSLIKLKENKRNALHVLEGTVVLGSAAIASNKVTDMSMLWHKRLVHVSERGLQA 93
           V+KV KG    LK N+ ++L++L+G+V  G + +A     D + LWH RL H+S+RG++ 
Sbjct: 28  VLKVLKGCRTILKGNRHDSLYILQGSVETGESNLAET-AKDETRLWHSRLAHMSQRGMEL 87

Query: 94  FSQQGLLGGVKDVELPFCEHCIMGKSTGVKFGRGKHTTKDILDYIHLDL 143
             ++G L   K   L FCE CI GK+  V F  G+HTTK+ LDY+H DL
Sbjct: 88  LVKKGFLDSSKVSSLKFCEDCIYGKTHRVNFSTGQHTTKNPLDYVHSDL 135

[Close]

BLAST of Cmc08g0226731 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 3.7e-17
Identity = 47/142 (33.10%), Postives = 78/142 (54.93%), Query Frame = 0


Query: 1   MLTNVRYVPELKHNLIFLGELDKSGYTIKLENRVMKVTKGSLIKLKENKRNALHVLEGTV 60
           +L +VR+VP+L+ NLI    LD+ GY     N+  ++TKGSL+  K   R  L+     +
Sbjct: 349 VLKDVRHVPDLRMNLISGIALDRDGYESYFANQKWRLTKGSLVIAKGVARGTLYRTNAEI 408

Query: 61  VLGSAAIASNKVTDMSMLWHKRLVHVSERGLQAFSQQGLLGGVKDVELPFCEHCIMGKST 120
             G    A ++++    LWHKR+ H+SE+GLQ  +++ L+   K   +  C++C+ GK  
Sbjct: 409 CQGELNAAQDEIS--VDLWHKRMGHMSEKGLQILAKKSLISYAKGTTVKPCDYCLFGKQH 468

Query: 121 GVKFGRGKHTTKDILDYIHLDL 143
            V F        +ILD ++ D+
Sbjct: 469 RVSFQTSSERKLNILDLVYSDV 488

[Close]

BLAST of Cmc08g0226731 vs. ExPASy TrEMBL
Match: A0A5D3DNU1 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004440 PE=4 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 4.4e-58
Identity = 115/142 (80.99%), Postives = 125/142 (88.03%), Query Frame = 0


Query: 1   MLTNVRYVPELKHNLIFLGELDKSGYTIKLENRVMKVTKGSLIKLKENKRNALHVLEGTV 60
           +LTNVRYVP+LK NLI LGELD+SG TIK EN VMKVTKGSL+KL+   R+ L+VLEGT 
Sbjct: 344 ILTNVRYVPKLKRNLISLGELDRSGCTIKSENGVMKVTKGSLVKLRGTLRHGLYVLEGTT 403

Query: 61  VLGSAAIASNKVTDMSMLWHKRLVHVSERGLQAFSQQGLLGGVKDVELPFCEHCIMGKST 120
           V GSAAIAS KVTDMSMLWHKRL HVSERGLQA SQQGLLGGVK+VELPFCEHCIMGKST
Sbjct: 404 VSGSAAIASGKVTDMSMLWHKRLAHVSERGLQALSQQGLLGGVKNVELPFCEHCIMGKST 463

Query: 121 GVKFGRGKHTTKDILDYIHLDL 143
            VKFG+GKHTTK ILDY+H DL
Sbjct: 464 RVKFGKGKHTTKGILDYVHSDL 485

[Close]

BLAST of Cmc08g0226731 vs. ExPASy TrEMBL
Match: A0A5D3CTV2 (Putative polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold488G00910 PE=4 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 4.4e-58
Identity = 115/142 (80.99%), Postives = 125/142 (88.03%), Query Frame = 0


Query: 1   MLTNVRYVPELKHNLIFLGELDKSGYTIKLENRVMKVTKGSLIKLKENKRNALHVLEGTV 60
           +LTNVRYVP+LK NLI LGELD+SG TIK EN VMKVTKGSL+KL+   R+ L+VLEGT 
Sbjct: 174 ILTNVRYVPKLKRNLISLGELDRSGCTIKSENGVMKVTKGSLVKLRGTLRHGLYVLEGTT 233

Query: 61  VLGSAAIASNKVTDMSMLWHKRLVHVSERGLQAFSQQGLLGGVKDVELPFCEHCIMGKST 120
           V GSAAIAS KVTDMSMLWHKRL HVSERGLQA SQQGLLGGVK+VELPFCEHCIMGKST
Sbjct: 234 VSGSAAIASGKVTDMSMLWHKRLAHVSERGLQALSQQGLLGGVKNVELPFCEHCIMGKST 293

Query: 121 GVKFGRGKHTTKDILDYIHLDL 143
            VKFG+GKHTTK ILDY+H DL
Sbjct: 294 RVKFGKGKHTTKGILDYVHSDL 315

[Close]

BLAST of Cmc08g0226731 vs. ExPASy TrEMBL
Match: A0A5A7UB25 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold560G00190 PE=4 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 4.4e-58
Identity = 115/142 (80.99%), Postives = 125/142 (88.03%), Query Frame = 0


Query: 1   MLTNVRYVPELKHNLIFLGELDKSGYTIKLENRVMKVTKGSLIKLKENKRNALHVLEGTV 60
           +LTNVRYVP+LK NLI LGELD+SG TIK EN VMKVTKGSL+KL+   R+ L+VLEGT 
Sbjct: 344 ILTNVRYVPKLKRNLISLGELDRSGCTIKSENGVMKVTKGSLVKLRGTLRHGLYVLEGTT 403

Query: 61  VLGSAAIASNKVTDMSMLWHKRLVHVSERGLQAFSQQGLLGGVKDVELPFCEHCIMGKST 120
           V GSAAIAS KVTDMSMLWHKRL HVSERGLQA SQQGLLGGVK+VELPFCEHCIMGKST
Sbjct: 404 VSGSAAIASGKVTDMSMLWHKRLAHVSERGLQALSQQGLLGGVKNVELPFCEHCIMGKST 463

Query: 121 GVKFGRGKHTTKDILDYIHLDL 143
            VKFG+GKHTTK ILDY+H DL
Sbjct: 464 RVKFGKGKHTTKGILDYVHSDL 485

[Close]

BLAST of Cmc08g0226731 vs. ExPASy TrEMBL
Match: A0A5A7U2U7 (Retrotransposon protein, putative, Ty1-copia sub-class OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G00590 PE=4 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 1.3e-57
Identity = 115/142 (80.99%), Postives = 125/142 (88.03%), Query Frame = 0


Query: 1   MLTNVRYVPELKHNLIFLGELDKSGYTIKLENRVMKVTKGSLIKLKENKRNALHVLEGTV 60
           +LTNVRYVP+LK NLI LGELD+SG TIK EN VMKVTKGSL+KL+   R+ L+VLEGT 
Sbjct: 344 ILTNVRYVPKLKRNLISLGELDRSGCTIKSENGVMKVTKGSLVKLRGTLRHGLYVLEGTT 403

Query: 61  VLGSAAIASNKVTDMSMLWHKRLVHVSERGLQAFSQQGLLGGVKDVELPFCEHCIMGKST 120
           V GSAAIAS KVT+MSMLWHKRL HVSERGLQA SQQGLLGGVK+VELPFCEHCIMGKST
Sbjct: 404 VSGSAAIASGKVTNMSMLWHKRLAHVSERGLQALSQQGLLGGVKNVELPFCEHCIMGKST 463

Query: 121 GVKFGRGKHTTKDILDYIHLDL 143
            VKFG+GKHTTK ILDYIH DL
Sbjct: 464 RVKFGKGKHTTKGILDYIHSDL 485

[Close]

BLAST of Cmc08g0226731 vs. ExPASy TrEMBL
Match: A0A5A7TP18 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G001600 PE=4 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 6.4e-57
Identity = 114/142 (80.28%), Postives = 123/142 (86.62%), Query Frame = 0


Query: 1   MLTNVRYVPELKHNLIFLGELDKSGYTIKLENRVMKVTKGSLIKLKENKRNALHVLEGTV 60
           +LTNV YVP+LK NLI LGELD+SG TIK EN VMKVTKGSL+KLK   R+ L+VLEGT 
Sbjct: 234 ILTNVLYVPKLKRNLISLGELDRSGCTIKSENGVMKVTKGSLVKLKGTLRHGLYVLEGTT 293

Query: 61  VLGSAAIASNKVTDMSMLWHKRLVHVSERGLQAFSQQGLLGGVKDVELPFCEHCIMGKST 120
           V GSAAIAS KVTDMSMLWHKRL HVSERGLQA SQQGLLGGVK+VELPFCEHCIMGKST
Sbjct: 294 VSGSAAIASGKVTDMSMLWHKRLAHVSERGLQALSQQGLLGGVKNVELPFCEHCIMGKST 353

Query: 121 GVKFGRGKHTTKDILDYIHLDL 143
            VKFG+GKH TK ILDY+H DL
Sbjct: 354 RVKFGKGKHITKGILDYVHSDL 375

[Close]

BLAST of Cmc08g0226731 vs. TAIR 10
Match: ATMG00300.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 100.9 bits (250), Expect = 8.6e-22
Identity = 48/109 (44.04%), Postives = 69/109 (63.30%), Query Frame = 0


Query: 34  VMKVTKGSLIKLKENKRNALHVLEGTVVLGSAAIASNKVTDMSMLWHKRLVHVSERGLQA 93
           V+KV KG    LK N+ ++L++L+G+V  G + +A     D + LWH RL H+S+RG++ 
Sbjct: 28  VLKVLKGCRTILKGNRHDSLYILQGSVETGESNLAET-AKDETRLWHSRLAHMSQRGMEL 87

Query: 94  FSQQGLLGGVKDVELPFCEHCIMGKSTGVKFGRGKHTTKDILDYIHLDL 143
             ++G L   K   L FCE CI GK+  V F  G+HTTK+ LDY+H DL
Sbjct: 88  LVKKGFLDSSKVSSLKFCEDCIYGKTHRVNFSTGQHTTKNPLDYVHSDL 135

The following BLAST results are available for this feature:

BLAST of Cmc08g0226731 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK13826.1	9.2e-58	80.99	putative polyprotein [Cucumis melo var. makuwa]	[more]
TYK25306.1	9.2e-58	80.99	putative gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0050719.1	9.2e-58	80.99	putative gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0047995.1	2.7e-57	80.99	retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa...	[more]
KAA0043826.1	1.3e-56	80.28	putative gag-pol polyprotein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc08g0226731 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P93293	1.2e-20	44.04	Uncharacterized mitochondrial protein AtMg00300 OS=Arabidopsis thaliana OX=3702 ...	[more]
P10978	3.7e-17	33.10	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]

BLAST of Cmc08g0226731 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DNU1	4.4e-58	80.99	Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A5D3CTV2	4.4e-58	80.99	Putative polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold488...	[more]
A0A5A7UB25	4.4e-58	80.99	Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A5A7U2U7	1.3e-57	80.99	Retrotransposon protein, putative, Ty1-copia sub-class OS=Cucumis melo var. maku...	[more]
A0A5A7TP18	6.4e-57	80.28	Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]

BLAST of Cmc08g0226731 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00300.1	8.6e-22	44.04	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025724	GAG-pre-integrase domain	PFAM	PF13976	gag_pre-integrs	coord: 65..119 e-value: 6.5E-14 score: 51.5

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0226731.1	Cmc08g0226731.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding