Cmc08g0226711 (gene) Melon (Charmono) v1.1

Overview
NameCmc08g0226711
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
LocationCMiso1.1chr08: 19125244 .. 19125959 (-)
RNA-Seq ExpressionCmc08g0226711
SyntenyCmc08g0226711
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATACTAGTGTCTAAGGATTATGTTGGAATCTATGAACTCAAAAAACAGTGGAGTAATAAGTTTGAAGTGAAAGATTTAGGTGAACTAAAAAGGATCCTAGGCATGGATGTAAAAAGAGACAGAGAGAAAGGTTTGTTAACCATTTCGAAGGAGAGTTATGCGATTAAACTACTTGAAAAGTTTAATATATCTGGTTGCAAGACAGTTTCAACACCCTTAGCATCTCGTTTTAGATTTTCTTTGTCTCAATGTCCTGTTACTGAACAAGAAAGGTTAGAGATGTCTAATATTCCATATTGTAATGTTGTTGGAAGTATTATATATCTGATGATTTGTACTAGGCCTACTTAGGTTATGCTATGAGTATGATAAGTAGATTTATGTCAAATCCTAAGAAGGAACATTGGAATGCTGTTAAATGGGTGTTACGATATTTTAAAGGTAGTGCCAGTGTATCATTGTGTTATAGCAAGGATCGTGATAAATCAACACTATTGGAAGGTTTCACAGATGTAGATTATGTTGCAGATCTTGATAAAAGAAGGTCTTTATCAGGTCACATTTTTCGCTTGTATGGTAATGTTGTCAGTTGGAAAGTTACTCTACAGCCAGTTGTTGCTTTGTCGACTATTGAGTCAGAATATATTTCTCTTGGTGAAGCAGTTAAGGAAGTAGTGTGGTTGAAAAGAAATGTTGGTGAGTTGTTATCGTAG

mRNA sequence

ATGATACTAGTGTCTAAGGATTATGTTGGAATCTATGAACTCAAAAAACAGTGGAGTAATAAGTTTGAAGTGAAAGATTTAGGTGAACTAAAAAGGATCCTAGGCATGGATGTAAAAAGAGACAGAGAGAAAGGTTTGTTAACCATTTCGAAGGAGAGTTATGCGATTAAACTACTTGAAAAGTTTAATATATCTGGTTGCAAGACAGTTTCAACACCCTTAGCATCTCGTTTTAGATTTTCTTTGTCTCAATGTCCTGTTACTGAACAAGAAAGGTTAGAGATGTCTAATATTCCATATTGTTATGCTATGAGTATGATAAGTAGATTTATGTCAAATCCTAAGAAGGAACATTGGAATGCTGTTAAATGGGTGTTACGATATTTTAAAGGTAGTGCCAGTGTATCATTGTGTTATAGCAAGGATCGTGATAAATCAACACTATTGGAAGGTTTCACAGATGTAGATTATGTTGCAGATCTTGATAAAAGAAGGTCTTTATCAGGTCACATTTTTCGCTTGTATGGTAATGTTGTCAGTTGGAAAGTTACTCTACAGCCAGTTGTTGCTTTGTCGACTATTGAGTCAGAATATATTTCTCTTGGTGAAGCAGTTAAGGAAGTAGTGTGGTTGAAAAGAAATGTTGGTGAGTTGTTATCGTAG

Coding sequence (CDS)

ATGATACTAGTGTCTAAGGATTATGTTGGAATCTATGAACTCAAAAAACAGTGGAGTAATAAGTTTGAAGTGAAAGATTTAGGTGAACTAAAAAGGATCCTAGGCATGGATGTAAAAAGAGACAGAGAGAAAGGTTTGTTAACCATTTCGAAGGAGAGTTATGCGATTAAACTACTTGAAAAGTTTAATATATCTGGTTGCAAGACAGTTTCAACACCCTTAGCATCTCGTTTTAGATTTTCTTTGTCTCAATGTCCTGTTACTGAACAAGAAAGGTTAGAGATGTCTAATATTCCATATTGTTATGCTATGAGTATGATAAGTAGATTTATGTCAAATCCTAAGAAGGAACATTGGAATGCTGTTAAATGGGTGTTACGATATTTTAAAGGTAGTGCCAGTGTATCATTGTGTTATAGCAAGGATCGTGATAAATCAACACTATTGGAAGGTTTCACAGATGTAGATTATGTTGCAGATCTTGATAAAAGAAGGTCTTTATCAGGTCACATTTTTCGCTTGTATGGTAATGTTGTCAGTTGGAAAGTTACTCTACAGCCAGTTGTTGCTTTGTCGACTATTGAGTCAGAATATATTTCTCTTGGTGAAGCAGTTAAGGAAGTAGTGTGGTTGAAAAGAAATGTTGGTGAGTTGTTATCGTAG

Protein sequence

MILVSKDYVGIYELKKQWSNKFEVKDLGELKRILGMDVKRDREKGLLTISKESYAIKLLEKFNISGCKTVSTPLASRFRFSLSQCPVTEQERLEMSNIPYCYAMSMISRFMSNPKKEHWNAVKWVLRYFKGSASVSLCYSKDRDKSTLLEGFTDVDYVADLDKRRSLSGHIFRLYGNVVSWKVTLQPVVALSTIESEYISLGEAVKEVVWLKRNVGELLS
Homology
[Close]
BLAST of Cmc08g0226711 vs. NCBI nr
Match: KAA0047995.1 (retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa])

HSP 1 Score: 369.8 bits (948), Expect = 1.7e-98
Identity = 192/238 (80.67%), Postives = 200/238 (84.03%), Query Frame = 0 

Query: 1    MILVSKDYVGIYELKKQWSNKFEVKDLGELKRILGMDVKRDREKGLLTISKESYAIKLLE 60
            MILVSKDY GI ELKKQ SN+FE+KDLGELKRILGMDVKRDREKGLLTIS+ESY IKLLE
Sbjct: 997  MILVSKDYAGICELKKQLSNEFEMKDLGELKRILGMDVKRDREKGLLTISQESYVIKLLE 1056

Query: 61   KFNISGCKTVSTPLASRFRFSLSQCPVTEQERLEMSNIPYC------------------Y 120
            K+N+S  K VSTPLAS FR S SQCPVT+QER+EMSNIPYC                  Y
Sbjct: 1057 KYNMSSSKAVSTPLASHFRLSSSQCPVTKQERIEMSNIPYCNAVGSIMYLMICTRPDLGY 1116

Query: 121  AMSMISRFMSNPKKEHWNAVKWVLRYFKGSASVSLCYSKDRDKSTLLEGFTDVDYVADLD 180
            AMSMISRFMSNP KEHW AVKWVLRY KGSASVSLCYS+D DKSTLLEGFTD DY ADLD
Sbjct: 1117 AMSMISRFMSNPGKEHWKAVKWVLRYLKGSASVSLCYSRDCDKSTLLEGFTDADYAADLD 1176

Query: 181  KRRSLSGHIFRLYGNVVSWKVTLQPVVALSTIESEYISLGEAVKEVVWLKRNVGELLS 221
            KRRSLSGHIFRLYGNVVSWKV LQPVVALST ESEYISLGEAVKE VWLKR VGELLS
Sbjct: 1177 KRRSLSGHIFRLYGNVVSWKVNLQPVVALSTTESEYISLGEAVKEAVWLKRIVGELLS 1234

[Close]
BLAST of Cmc08g0226711 vs. NCBI nr
Match: TYK13826.1 (putative polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 367.9 bits (943), Expect = 6.3e-98
Identity = 191/238 (80.25%), Postives = 200/238 (84.03%), Query Frame = 0 

Query: 1    MILVSKDYVGIYELKKQWSNKFEVKDLGELKRILGMDVKRDREKGLLTISKESYAIKLLE 60
            MILVSKDY  I ELKKQ SN+FE+KDLGELKRILGMDVKRD+EKGLLTIS+ESY IKLLE
Sbjct: 855  MILVSKDYAEICELKKQLSNEFEMKDLGELKRILGMDVKRDKEKGLLTISQESYVIKLLE 914

Query: 61   KFNISGCKTVSTPLASRFRFSLSQCPVTEQERLEMSNIPYC------------------Y 120
            K+N+SG K VSTPLAS FR S SQCPVT+QER+EMSNIPYC                  Y
Sbjct: 915  KYNMSGSKAVSTPLASHFRLSSSQCPVTKQERIEMSNIPYCNAVGSIMYLMICTRPDLGY 974

Query: 121  AMSMISRFMSNPKKEHWNAVKWVLRYFKGSASVSLCYSKDRDKSTLLEGFTDVDYVADLD 180
            AMSMISRFMSNP KEHW AVKWVLRY KGSASVSLCYS+D DKSTLLEGFTD DY ADLD
Sbjct: 975  AMSMISRFMSNPGKEHWKAVKWVLRYLKGSASVSLCYSRDCDKSTLLEGFTDADYAADLD 1034

Query: 181  KRRSLSGHIFRLYGNVVSWKVTLQPVVALSTIESEYISLGEAVKEVVWLKRNVGELLS 221
            KRRSLSGHIFRLYGNVVSWKV LQPVVALST ESEYISLGEAVKE VWLKR VGELLS
Sbjct: 1035 KRRSLSGHIFRLYGNVVSWKVNLQPVVALSTTESEYISLGEAVKEAVWLKRIVGELLS 1092

[Close]
BLAST of Cmc08g0226711 vs. NCBI nr
Match: KAA0050719.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 365.2 bits (936), Expect = 4.1e-97
Identity = 190/238 (79.83%), Postives = 199/238 (83.61%), Query Frame = 0 

Query: 1    MILVSKDYVGIYELKKQWSNKFEVKDLGELKRILGMDVKRDREKGLLTISKESYAIKLLE 60
            MILVSKDY  I ELKKQ SN+FE+KDLGELKRILGMDVKRD+EKGLLTIS+ESY IKLLE
Sbjct: 1025 MILVSKDYAEICELKKQLSNEFEMKDLGELKRILGMDVKRDKEKGLLTISQESYVIKLLE 1084

Query: 61   KFNISGCKTVSTPLASRFRFSLSQCPVTEQERLEMSNIPYC------------------Y 120
            K+N+S  K VSTPLAS FR S SQCPVT+QER+EMSNIPYC                  Y
Sbjct: 1085 KYNMSDSKAVSTPLASHFRLSSSQCPVTKQERIEMSNIPYCNAVGSIMYLMICTRPDLGY 1144

Query: 121  AMSMISRFMSNPKKEHWNAVKWVLRYFKGSASVSLCYSKDRDKSTLLEGFTDVDYVADLD 180
            AMSMISRFMSNP KEHW AVKWVLRY KGSASVSLCYS+D DKSTLLEGFTD DY ADLD
Sbjct: 1145 AMSMISRFMSNPGKEHWKAVKWVLRYLKGSASVSLCYSRDCDKSTLLEGFTDADYAADLD 1204

Query: 181  KRRSLSGHIFRLYGNVVSWKVTLQPVVALSTIESEYISLGEAVKEVVWLKRNVGELLS 221
            KRRSLSGHIFRLYGNVVSWKV LQPVVALST ESEYISLGEAVKE VWLKR VGELLS
Sbjct: 1205 KRRSLSGHIFRLYGNVVSWKVNLQPVVALSTTESEYISLGEAVKEAVWLKRIVGELLS 1262

[Close]
BLAST of Cmc08g0226711 vs. NCBI nr
Match: KAA0067607.1 (retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa] >TYJ97155.1 retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa])

HSP 1 Score: 319.3 bits (817), Expect = 2.6e-83
Identity = 165/205 (80.49%), Postives = 177/205 (86.34%), Query Frame = 0 

Query: 16   KQWSNKFEVKDLGELKRILGMDVKRDREKGLLTISKESYAIKLLEKFNISGCKTVSTPLA 75
            ++ SN+FE+KDLGELKRILGMDVKRDR+KGL TIS+ESY IKLLEK+NISG K VSTPLA
Sbjct: 835  RKLSNEFEMKDLGELKRILGMDVKRDRKKGLSTISQESYVIKLLEKYNISGSKAVSTPLA 894

Query: 76   SRFRFSLSQCPVTEQERLEMSNIPYCYAMSMISRFMSNPKKEHWNAVKWVLRYFKGSASV 135
            S FR S SQCPVT+QER ++      Y MSMISRFMSNP KEHW  VKWVLRY KGS SV
Sbjct: 895  SYFRLSSSQCPVTKQERPDLG-----YVMSMISRFMSNPGKEHWKVVKWVLRYLKGSTSV 954

Query: 136  SLCYSKDRDKSTLLEGFTDVDYVADLDKRRSLSGHIFRLYGNVVSWKVTLQPVVALSTIE 195
            SLCYS+D DKSTLLEGFTD DYVADLDKRRSLSGHIFRLYGNVVSWKV LQPVVALST E
Sbjct: 955  SLCYSRDYDKSTLLEGFTDADYVADLDKRRSLSGHIFRLYGNVVSWKVNLQPVVALSTTE 1014

Query: 196  SEYISLGEAVKEVVWLKRNVGELLS 221
            SEYISLGEAVKE V L+R VGELLS
Sbjct: 1015 SEYISLGEAVKEAVRLQRIVGELLS 1034

[Close]
BLAST of Cmc08g0226711 vs. NCBI nr
Match: TYK21344.1 (retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa])

HSP 1 Score: 280.0 bits (715), Expect = 1.7e-71
Identity = 151/220 (68.64%), Postives = 163/220 (74.09%), Query Frame = 0 

Query: 1   MILVSKDYVGIYELKKQWSNKFEVKDLGELKRILGMDVKRDREKGLLTISKESYAIKLLE 60
           MILV KDY  I ELK+Q SN+FE+KDL +LKRILGMDVKRDR+KGLLTIS+ESY IKLLE
Sbjct: 624 MILVCKDYAEICELKRQLSNEFEMKDLDKLKRILGMDVKRDRKKGLLTISQESYVIKLLE 683

Query: 61  KFNISGCKTVSTPLASRFRFSLSQCPVTEQERLEMSNIPYCYAMSMISRFMSNPKKEHWN 120
           K ++                                     YAM MISRFMSNP K+HW 
Sbjct: 684 KPDLG------------------------------------YAMGMISRFMSNPGKQHWK 743

Query: 121 AVKWVLRYFKGSASVSLCYSKDRDKSTLLEGFTDVDYVADLDKRRSLSGHIFRLYGNVVS 180
           AVKWVLRY KGSASVSLCYS+D DKSTLL GFTD DYVA LDKRRSLSGHI+RLYGNVVS
Sbjct: 744 AVKWVLRYLKGSASVSLCYSRDCDKSTLLRGFTDADYVAYLDKRRSLSGHIYRLYGNVVS 803

Query: 181 WKVTLQPVVALSTIESEYISLGEAVKEVVWLKRNVGELLS 221
           WKV LQPVVALST ESEYISLGEA+KE VWLKR VGELLS
Sbjct: 804 WKVNLQPVVALSTTESEYISLGEAIKEAVWLKRIVGELLS 807

[Close]
BLAST of Cmc08g0226711 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 3.1e-47
Identity = 96/236 (40.68%), Postives = 140/236 (59.32%), Query Frame = 0 

Query: 1    MILVSKDYVGIYELKKQWSNKFEVKDLGELKRILGMDVKRDREKGLLTISKESYAIKLLE 60
            M++V KD   I +LK   S  F++KDLG  ++ILGM + R+R    L +S+E Y  ++LE
Sbjct: 1012 MLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRERTSRKLWLSQEKYIERVLE 1071

Query: 61   KFNISGCKTVSTPLASRFRFSLSQCPVTEQERLEMSNIPY------------------CY 120
            +FN+   K VSTPLA   + S   CP T +E+  M+ +PY                   +
Sbjct: 1072 RFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKVPYSSAVGSLMYAMVCTRPDIAH 1131

Query: 121  AMSMISRFMSNPKKEHWNAVKWVLRYFKGSASVSLCYSKDRDKSTLLEGFTDVDYVADLD 180
            A+ ++SRF+ NP KEHW AVKW+LRY +G+    LC+        +L+G+TD D   D+D
Sbjct: 1132 AVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFG---GSDPILKGYTDADMAGDID 1191

Query: 181  KRRSLSGHIFRLYGNVVSWKVTLQPVVALSTIESEYISLGEAVKEVVWLKRNVGEL 219
             R+S +G++F   G  +SW+  LQ  VALST E+EYI+  E  KE++WLKR + EL
Sbjct: 1192 NRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWLKRFLQEL 1244

[Close]
BLAST of Cmc08g0226711 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 117.1 bits (292), Expect = 2.5e-25
Identity = 67/224 (29.91%), Postives = 119/224 (53.12%), Query Frame = 0 

Query: 1    MILVSKDYVGIYELKKQWSNKFEVKDLGELKRILGMDVKRDREKGLLTISKESYAIKLLE 60
            +++ + D   +   K+    KF + DL E+K  +G+ ++   +K  + +S+ +Y  K+L 
Sbjct: 1091 VVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRIEMQEDK--IYLSQSAYVKKILS 1150

Query: 61   KFNISGCKTVSTPLASRFRFSL----SQCPVTEQERLE-MSNIPYC------YAMSMISR 120
            KFN+  C  VSTPL S+  + L      C    +  +  +  I  C       A++++SR
Sbjct: 1151 KFNMENCNAVSTPLPSKINYELLNSDEDCNTPCRSLIGCLMYIMLCTRPDLTTAVNILSR 1210

Query: 121  FMSNPKKEHWNAVKWVLRYFKGSASVSLCYSKDRDKSTLLEGFTDVDYVADLDKRRSLSG 180
            + S    E W  +K VLRY KG+  + L + K+      + G+ D D+      R+S +G
Sbjct: 1211 YSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDWAGSEIDRKSTTG 1270

Query: 181  HIFRLYG-NVVSWKVTLQPVVALSTIESEYISLGEAVKEVVWLK 213
            ++F+++  N++ W    Q  VA S+ E+EY++L EAV+E +WLK
Sbjct: 1271 YLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVREALWLK 1312

[Close]
BLAST of Cmc08g0226711 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.4e-18
Identity = 46/109 (42.20%), Postives = 71/109 (65.14%), Query Frame = 0 

Query: 103 AMSMISRFMSNPKKEHWNAVKWVLRYFKGSASVSLCYSKDRDKSTLLEGFTDVDYVADLD 162
           A+ ++S+F S+P   HW A+K VLRY + + +  L ++  R  +  L G++D D+  D++
Sbjct: 27  AVGVLSQFASDPCPTHWQALKRVLRYLQSTQTYGLEFT--RAGTAKLVGYSDADWAGDVE 86

Query: 163 KRRSLSGHIFRLYGNVVSWKVTLQPVVALSTIESEYISLGEAVKEVVWL 212
            RRS SG++F+L G  VSW+   Q  VALS+ E EY++L EA +E VWL
Sbjct: 87  SRRSTSGYLFKLNGGCVSWRSKKQRTVALSSTEDEYMALSEATQEAVWL 133

[Close]
BLAST of Cmc08g0226711 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 3.0e-18
Identity = 65/229 (28.38%), Postives = 113/229 (49.34%), Query Frame = 0 

Query: 1    MILVSKDYVGIYELKKQWSNKFEVKDLGELKRILGMDVKRDREKGLLTISKESYAIKLLE 60
            +++   D V +       S +F VK+  +L   LG++ KR  +   L +S+  Y + LL 
Sbjct: 1137 ILITGNDTVLLKHTLDALSQRFSVKEHEDLHYFLGIEAKRVPQG--LHLSQRRYTLDLLA 1196

Query: 61   KFNISGCKTVSTPLASRFRFSL---SQCPVTEQERLEMSNIPY--------CYAMSMISR 120
            + N+   K V+TP+A+  + +L   ++ P   + R  + ++ Y         YA++ +S+
Sbjct: 1197 RTNMLTAKPVATPMATSPKLTLHSGTKLPDPTEYRGIVGSLQYLAFTRPDLSYAVNRLSQ 1256

Query: 121  FMSNPKKEHWNAVKWVLRYFKGSASVSLCYSKDRDKSTLLEGFTDVDYVADLDKRRSLSG 180
            +M  P  +HWNA+K VLRY  G+    +   K    S  L  ++D D+  D D   S +G
Sbjct: 1257 YMHMPTDDHWNALKRVLRYLAGTPDHGIFLKKGNTLS--LHAYSDADWAGDTDDYVSTNG 1316

Query: 181  HIFRLYGNVVSWKVTLQPVVALSTIESEYISLGEAVKEVVWLKRNVGEL 219
            +I  L  + +SW    Q  V  S+ E+EY S+     E+ W+   + EL
Sbjct: 1317 YIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSELQWICSLLTEL 1361

[Close]
BLAST of Cmc08g0226711 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 9.7e-17
Identity = 66/229 (28.82%), Postives = 109/229 (47.60%), Query Frame = 0 

Query: 1    MILVSKDYVGIYELKKQWSNKFEVKDLGELKRILGMDVKRDREKGLLTISKESYAIKLLE 60
            +++   D   ++      S +F VKD  EL   LG++ KR      L +S+  Y + LL 
Sbjct: 1154 ILITGNDPTLLHNTLDNLSQRFSVKDHEELHYFLGIEAKRVPTG--LHLSQRRYILDLLA 1213

Query: 61   KFNISGCKTVSTPLASRFRFSL-SQCPVTEQ----------ERLEMSNIPYCYAMSMISR 120
            + N+   K V+TP+A   + SL S   +T+           + L  +     YA++ +S+
Sbjct: 1214 RTNMITAKPVTTPMAPSPKLSLYSGTKLTDPTEYRGIVGSLQYLAFTRPDISYAVNRLSQ 1273

Query: 121  FMSNPKKEHWNAVKWVLRYFKGSASVSLCYSKDRDKSTLLEGFTDVDYVADLDKRRSLSG 180
            FM  P +EH  A+K +LRY  G+ +  +   K    S  L  ++D D+  D D   S +G
Sbjct: 1274 FMHMPTEEHLQALKRILRYLAGTPNHGIFLKKGNTLS--LHAYSDADWAGDKDDYVSTNG 1333

Query: 181  HIFRLYGNVVSWKVTLQPVVALSTIESEYISLGEAVKEVVWLKRNVGEL 219
            +I  L  + +SW    Q  V  S+ E+EY S+     E+ W+   + EL
Sbjct: 1334 YIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSEMQWICSLLTEL 1378

[Close]
BLAST of Cmc08g0226711 vs. ExPASy TrEMBL
Match: A0A5A7U2U7 (Retrotransposon protein, putative, Ty1-copia sub-class OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G00590 PE=4 SV=1)

HSP 1 Score: 369.8 bits (948), Expect = 8.0e-99
Identity = 192/238 (80.67%), Postives = 200/238 (84.03%), Query Frame = 0 

Query: 1    MILVSKDYVGIYELKKQWSNKFEVKDLGELKRILGMDVKRDREKGLLTISKESYAIKLLE 60
            MILVSKDY GI ELKKQ SN+FE+KDLGELKRILGMDVKRDREKGLLTIS+ESY IKLLE
Sbjct: 997  MILVSKDYAGICELKKQLSNEFEMKDLGELKRILGMDVKRDREKGLLTISQESYVIKLLE 1056

Query: 61   KFNISGCKTVSTPLASRFRFSLSQCPVTEQERLEMSNIPYC------------------Y 120
            K+N+S  K VSTPLAS FR S SQCPVT+QER+EMSNIPYC                  Y
Sbjct: 1057 KYNMSSSKAVSTPLASHFRLSSSQCPVTKQERIEMSNIPYCNAVGSIMYLMICTRPDLGY 1116

Query: 121  AMSMISRFMSNPKKEHWNAVKWVLRYFKGSASVSLCYSKDRDKSTLLEGFTDVDYVADLD 180
            AMSMISRFMSNP KEHW AVKWVLRY KGSASVSLCYS+D DKSTLLEGFTD DY ADLD
Sbjct: 1117 AMSMISRFMSNPGKEHWKAVKWVLRYLKGSASVSLCYSRDCDKSTLLEGFTDADYAADLD 1176

Query: 181  KRRSLSGHIFRLYGNVVSWKVTLQPVVALSTIESEYISLGEAVKEVVWLKRNVGELLS 221
            KRRSLSGHIFRLYGNVVSWKV LQPVVALST ESEYISLGEAVKE VWLKR VGELLS
Sbjct: 1177 KRRSLSGHIFRLYGNVVSWKVNLQPVVALSTTESEYISLGEAVKEAVWLKRIVGELLS 1234

[Close]
BLAST of Cmc08g0226711 vs. ExPASy TrEMBL
Match: A0A5D3CTV2 (Putative polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold488G00910 PE=4 SV=1)

HSP 1 Score: 367.9 bits (943), Expect = 3.1e-98
Identity = 191/238 (80.25%), Postives = 200/238 (84.03%), Query Frame = 0 

Query: 1    MILVSKDYVGIYELKKQWSNKFEVKDLGELKRILGMDVKRDREKGLLTISKESYAIKLLE 60
            MILVSKDY  I ELKKQ SN+FE+KDLGELKRILGMDVKRD+EKGLLTIS+ESY IKLLE
Sbjct: 855  MILVSKDYAEICELKKQLSNEFEMKDLGELKRILGMDVKRDKEKGLLTISQESYVIKLLE 914

Query: 61   KFNISGCKTVSTPLASRFRFSLSQCPVTEQERLEMSNIPYC------------------Y 120
            K+N+SG K VSTPLAS FR S SQCPVT+QER+EMSNIPYC                  Y
Sbjct: 915  KYNMSGSKAVSTPLASHFRLSSSQCPVTKQERIEMSNIPYCNAVGSIMYLMICTRPDLGY 974

Query: 121  AMSMISRFMSNPKKEHWNAVKWVLRYFKGSASVSLCYSKDRDKSTLLEGFTDVDYVADLD 180
            AMSMISRFMSNP KEHW AVKWVLRY KGSASVSLCYS+D DKSTLLEGFTD DY ADLD
Sbjct: 975  AMSMISRFMSNPGKEHWKAVKWVLRYLKGSASVSLCYSRDCDKSTLLEGFTDADYAADLD 1034

Query: 181  KRRSLSGHIFRLYGNVVSWKVTLQPVVALSTIESEYISLGEAVKEVVWLKRNVGELLS 221
            KRRSLSGHIFRLYGNVVSWKV LQPVVALST ESEYISLGEAVKE VWLKR VGELLS
Sbjct: 1035 KRRSLSGHIFRLYGNVVSWKVNLQPVVALSTTESEYISLGEAVKEAVWLKRIVGELLS 1092

[Close]
BLAST of Cmc08g0226711 vs. ExPASy TrEMBL
Match: A0A5A7UB25 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold560G00190 PE=4 SV=1)

HSP 1 Score: 365.2 bits (936), Expect = 2.0e-97
Identity = 190/238 (79.83%), Postives = 199/238 (83.61%), Query Frame = 0 

Query: 1    MILVSKDYVGIYELKKQWSNKFEVKDLGELKRILGMDVKRDREKGLLTISKESYAIKLLE 60
            MILVSKDY  I ELKKQ SN+FE+KDLGELKRILGMDVKRD+EKGLLTIS+ESY IKLLE
Sbjct: 1025 MILVSKDYAEICELKKQLSNEFEMKDLGELKRILGMDVKRDKEKGLLTISQESYVIKLLE 1084

Query: 61   KFNISGCKTVSTPLASRFRFSLSQCPVTEQERLEMSNIPYC------------------Y 120
            K+N+S  K VSTPLAS FR S SQCPVT+QER+EMSNIPYC                  Y
Sbjct: 1085 KYNMSDSKAVSTPLASHFRLSSSQCPVTKQERIEMSNIPYCNAVGSIMYLMICTRPDLGY 1144

Query: 121  AMSMISRFMSNPKKEHWNAVKWVLRYFKGSASVSLCYSKDRDKSTLLEGFTDVDYVADLD 180
            AMSMISRFMSNP KEHW AVKWVLRY KGSASVSLCYS+D DKSTLLEGFTD DY ADLD
Sbjct: 1145 AMSMISRFMSNPGKEHWKAVKWVLRYLKGSASVSLCYSRDCDKSTLLEGFTDADYAADLD 1204

Query: 181  KRRSLSGHIFRLYGNVVSWKVTLQPVVALSTIESEYISLGEAVKEVVWLKRNVGELLS 221
            KRRSLSGHIFRLYGNVVSWKV LQPVVALST ESEYISLGEAVKE VWLKR VGELLS
Sbjct: 1205 KRRSLSGHIFRLYGNVVSWKVNLQPVVALSTTESEYISLGEAVKEAVWLKRIVGELLS 1262

[Close]
BLAST of Cmc08g0226711 vs. ExPASy TrEMBL
Match: A0A5A7VKC2 (Retrotransposon protein, putative, Ty1-copia subclass OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold174G00310 PE=4 SV=1)

HSP 1 Score: 319.3 bits (817), Expect = 1.2e-83
Identity = 165/205 (80.49%), Postives = 177/205 (86.34%), Query Frame = 0 

Query: 16   KQWSNKFEVKDLGELKRILGMDVKRDREKGLLTISKESYAIKLLEKFNISGCKTVSTPLA 75
            ++ SN+FE+KDLGELKRILGMDVKRDR+KGL TIS+ESY IKLLEK+NISG K VSTPLA
Sbjct: 835  RKLSNEFEMKDLGELKRILGMDVKRDRKKGLSTISQESYVIKLLEKYNISGSKAVSTPLA 894

Query: 76   SRFRFSLSQCPVTEQERLEMSNIPYCYAMSMISRFMSNPKKEHWNAVKWVLRYFKGSASV 135
            S FR S SQCPVT+QER ++      Y MSMISRFMSNP KEHW  VKWVLRY KGS SV
Sbjct: 895  SYFRLSSSQCPVTKQERPDLG-----YVMSMISRFMSNPGKEHWKVVKWVLRYLKGSTSV 954

Query: 136  SLCYSKDRDKSTLLEGFTDVDYVADLDKRRSLSGHIFRLYGNVVSWKVTLQPVVALSTIE 195
            SLCYS+D DKSTLLEGFTD DYVADLDKRRSLSGHIFRLYGNVVSWKV LQPVVALST E
Sbjct: 955  SLCYSRDYDKSTLLEGFTDADYVADLDKRRSLSGHIFRLYGNVVSWKVNLQPVVALSTTE 1014

Query: 196  SEYISLGEAVKEVVWLKRNVGELLS 221
            SEYISLGEAVKE V L+R VGELLS
Sbjct: 1015 SEYISLGEAVKEAVRLQRIVGELLS 1034

[Close]
BLAST of Cmc08g0226711 vs. ExPASy TrEMBL
Match: A0A5D3DCM9 (Retrotransposon protein, putative, Ty1-copia subclass OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1814G00120 PE=4 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 8.4e-72
Identity = 151/220 (68.64%), Postives = 163/220 (74.09%), Query Frame = 0 

Query: 1   MILVSKDYVGIYELKKQWSNKFEVKDLGELKRILGMDVKRDREKGLLTISKESYAIKLLE 60
           MILV KDY  I ELK+Q SN+FE+KDL +LKRILGMDVKRDR+KGLLTIS+ESY IKLLE
Sbjct: 624 MILVCKDYAEICELKRQLSNEFEMKDLDKLKRILGMDVKRDRKKGLLTISQESYVIKLLE 683

Query: 61  KFNISGCKTVSTPLASRFRFSLSQCPVTEQERLEMSNIPYCYAMSMISRFMSNPKKEHWN 120
           K ++                                     YAM MISRFMSNP K+HW 
Sbjct: 684 KPDLG------------------------------------YAMGMISRFMSNPGKQHWK 743

Query: 121 AVKWVLRYFKGSASVSLCYSKDRDKSTLLEGFTDVDYVADLDKRRSLSGHIFRLYGNVVS 180
           AVKWVLRY KGSASVSLCYS+D DKSTLL GFTD DYVA LDKRRSLSGHI+RLYGNVVS
Sbjct: 744 AVKWVLRYLKGSASVSLCYSRDCDKSTLLRGFTDADYVAYLDKRRSLSGHIYRLYGNVVS 803

Query: 181 WKVTLQPVVALSTIESEYISLGEAVKEVVWLKRNVGELLS 221
           WKV LQPVVALST ESEYISLGEA+KE VWLKR VGELLS
Sbjct: 804 WKVNLQPVVALSTTESEYISLGEAIKEAVWLKRIVGELLS 807

[Close]
BLAST of Cmc08g0226711 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 107.1 bits (266), Expect = 1.9e-23
Identity = 68/229 (29.69%), Postives = 117/229 (51.09%), Query Frame = 0 

Query: 1   MILVSKDYVGIYELKKQWSNKFEVKDLGELKRILGMDVKRDREKGLLTISKESYAIKLLE 60
           +I+ S +   + ELK Q  + F+++DLG LK  LG+++ R      + I +  YA+ LL+
Sbjct: 287 IIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIARSAAG--INICQRKYALDLLD 346

Query: 61  KFNISGCKTVSTPLASRFRFSLS-----------QCPVTEQERLEMSNIPYCYAMSMISR 120
           +  + GCK  S P+     FS             +  +     L+++ +   +A++ +S+
Sbjct: 347 ETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAKAYRRLIGRLMYLQITRLDISFAVNKLSQ 406

Query: 121 FMSNPKKEHWNAVKWVLRYFKGSASVSLCYSKDRDKSTLLEGFTDVDYVADLDKRRSLSG 180
           F   P+  H  AV  +L Y KG+    L YS   +    L+ F+D  + +  D RRS +G
Sbjct: 407 FSEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQ--LQVFSDASFQSCKDTRRSTNG 466

Query: 181 HIFRLYGNVVSWKVTLQPVVALSTIESEYISLGEAVKEVVWLKRNVGEL 219
           +   L  +++SWK   Q VV+ S+ E+EY +L  A  E++WL +   EL
Sbjct: 467 YCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWLAQFFREL 511

[Close]
BLAST of Cmc08g0226711 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 85.1 bits (209), Expect = 7.6e-17
Identity = 60/204 (29.41%), Postives = 98/204 (48.04%), Query Frame = 0 

Query: 17  QWSNKFEVKDLGELKRILGMDVKRDREKGLLTISKESYAIKLLEKFNISGCKTVSTPLAS 76
           Q S+ F +KDLG +   LG+ +K     GL  +S+  YA ++L    +  CK +STPL  
Sbjct: 26  QLSSTFSMKDLGPVHYFLGIQIK-THPSGLF-LSQTKYAEQILNNAGMLDCKPMSTPLPL 85

Query: 77  RFRFSLSQCP----------VTEQERLEMSNIPYCYAMSMISRFMSNPKKEHWNAVKWVL 136
           +   S+S             V   + L ++     YA++++ + M  P    ++ +K VL
Sbjct: 86  KLNSSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYAVNIVCQRMHEPTLADFDLLKRVL 145

Query: 137 RYFKGSASVSLCYSKDRDKSTLLEGFTDVDYVADLDKRRSLSGHIFRLYGNVVSWKVTLQ 196
           RY KG+    L   K+   +  ++ F D D+      RRS +G    L  N++SW    Q
Sbjct: 146 RYVKGTIFHGLYIHKNSKLN--VQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQ 205

Query: 197 PVVALSTIESEYISLGEAVKEVVW 211
           P V+ S+ E+EY +L     E+ W
Sbjct: 206 PTVSRSSTETEYRALALTAAELTW 225

The following BLAST results are available for this feature:
BLAST of Cmc08g0226711 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0047995.11.7e-9880.67retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa... [more]
TYK13826.16.3e-9880.25putative polyprotein [Cucumis melo var. makuwa][more]
KAA0050719.14.1e-9779.83putative gag-pol polyprotein [Cucumis melo var. makuwa][more]
KAA0067607.12.6e-8380.49retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa]... [more]
TYK21344.11.7e-7168.64retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa][more]
BLAST of Cmc08g0226711 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P109783.1e-4740.68Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
P041462.5e-2529.91Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3[more]
P0CV721.4e-1842.20Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P... [more]
Q9ZT943.0e-1828.38Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
Q94HW29.7e-1728.82Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
BLAST of Cmc08g0226711 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7U2U78.0e-9980.67Retrotransposon protein, putative, Ty1-copia sub-class OS=Cucumis melo var. maku... [more]
A0A5D3CTV23.1e-9880.25Putative polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold488... [more]
A0A5A7UB252.0e-9779.83Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca... [more]
A0A5A7VKC21.2e-8380.49Retrotransposon protein, putative, Ty1-copia subclass OS=Cucumis melo var. makuw... [more]
A0A5D3DCM98.4e-7268.64Retrotransposon protein, putative, Ty1-copia subclass OS=Cucumis melo var. makuw... [more]
BLAST of Cmc08g0226711 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G23160.11.9e-2329.69cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [more]
ATMG00810.17.6e-1729.41DNA/RNA polymerases superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 1..74
e-value: 8.7E-11
score: 41.9
NoneNo IPR availableCDDcd09272RNase_HI_RT_Ty1coord: 150..218
e-value: 4.19404E-28
score: 101.391

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc08g0226711.1Cmc08g0226711.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0050896 response to stimulus
cellular_component GO:0016020 membrane
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0016740 transferase activity
molecular_function GO:0008270 zinc ion binding