Cmc08g0226671 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0226671
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	40S ribosomal protein S25
Location	CMiso1.1chr08: 19056760 .. 19058834 (-)
RNA-Seq Expression	Cmc08g0226671
Synteny	Cmc08g0226671

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATGGAGCAAGGGAAAGCAGAAGGAGAAGGTGAACAACATGGTATTGTTTGATCAGGGAACCTATGACAAGCTTCTTTCAGAAGCTCCAAAGTTCAAGCTTATTACTCCTTCCATCCTTTCTGACAGATTAAGGGTATGGCTTGCTCAATCCCATTTGGCTTGTATGTTCACGTCTTATAAATATGCATGTCTTTTGATTGTTAAATGTGGACCAAGTTTCTTAACACTCGTTTGAAATTTGTGTGCCCCACTACTTCATTTTTCGATCACTTGGTTTGTTTAAAAGTAAGATTTTGATCCATTAAAAATAGAATGGAAAAGAAATGGGGGCTGGGCGATTATAAGTTGAGCTTTCTTTCTCAGTTTTTATGAACTCCAATGTATGATAATCACATAATTTGAAATCCAAGTCAAAAACTGCATTTACTATACTGGTATATATCAAACTTCATTTGTTAGATCTTCATTTAATGAAACACGTTATTGTATTTTTGTAATCTATGGTTCCCAAACACGTTGGATTTGTTCTGGGATGACTCAAATTATAGATACATAGTTTATGTATTGCCTATGAAGCACAGATTCCTCATGTGAGGCAAAGAATTTGCATCGGATACCAATACTTCTCAGATGCGAATTTGATACTCAATTTGGCCGATGTATTTGACACACATCTGATGCACGATTTAACGTATCTATTTTTATGTTAACCTTTATTTAAAGAAAAATATAAGTAACTCATGTAATATTTTCCGACCAAAAACTAAACAACTTATTTAAAACCCAAAACTAAAAGGACAAAAATAAATAAAAAAACCAAATATTAGAATCTTCTGATCATCATCATTGCATTTGAGTCCCCACTATGTCTTGTAAAATATATTCTTCTTGAATATATTCAACAATTTAACAAAGAAGTTTATACTTTTTCTCTAATCTTCTTCCTCTTTCCAGATCAATTTGTCTCTTTTTTACTGAATTCCATTGATTATTGTACTTCTATATATCTATATCCTAGAATTTTTAAAGAAAAAATATTGTATCTTCAAACGTGTCCGTATCCTAGTTGTCTAGAAATTTACGTATCGACCTATCCTATCATATTCGTATTTCGTATTTATATCTACTTCATAAATACAAAACTGTATTGGATAACTTATCCCCTTTTCTTACCTACCATATTCCAAATGTGTCACTCACTTAAGATGCTGCAGTACTCCCATTTTTATACTACATATTCATATGGTTAACACAATTACCAAGTGTTCTCTTTCAATTTGATATCTCATGTCAGCAGGGGGTATATTTTGTACATTATTATTTATTACTCCATTTGAGGATAAACAAATTTTCGTTAGCCACTTAAACTCCAATTAAACCATAAGAGTAGTGCATCTTTTGTAACTGCTTCTTGTTGTGAAGTATATGATATCTTCATCCAAAGCAAAGTGGGTTTTCTTTGGTTAGCATGTCATTCCAACAAAACTTTGACTCGTTCTATTTGGATGGATTGTTATGGAGACGGTAAGTTTCTAAAATCCTGTTTGTTTGTTGACTGTTTTTATCAGATCAATGGATCATTGGCACGTCGGGCGATCAAGGATTTAATGGCGAGAGGTTCTATCCGGCTCATATCTGCTCATTCTAGCCAGCAAATATACACTAGAGCCACAAATACATGATCAAAGAATTGCCATTTAAAGGAGGAACATCTTGGTTTTCTTGCATCTCGTCAGAAACTATCTATGATTTTGAATATCCGCATGTTTGCATTTAGAACTGGATGAATTATTTGCACTGCTTGATCGGATATATTTTTATATAATTTGCATTTTTGCTTTCATTTCTTTGAGTTCCTCTAGCAAATGAGCAAGCATGTACTATTGATTTTGGATTAGAGATTCGTGGTCTCTACTTTGTCGATGGAAGAAAAAATACTGAAACATCTTATGTAAAGGGTCGTAAGGCACTATTTTAATGGCTCATTGAATTCACTTTGACTTTTCATTTCTTTCAATTTATCTAATTTTTTTTCTTACATCAAGTCACAATATATTGGAAAAATTATTTTTT

mRNA sequence

AAATGGAGCAAGGGAAAGCAGAAGGAGAAGGTGAACAACATGGTATTGTTTGATCAGGGAACCTATGACAAGCTTCTTTCAGAAGCTCCAAAGTTCAAGCTTATTACTCCTTCCATCCTTTCTGACAGATTAAGGATCAATGGATCATTGGCACGTCGGGCGATCAAGGATTTAATGGCGAGAGGTTCTATCCGGCTCATATCTGCTCATTCTAGCCAGCAAATATACACTAGAGCCACAAATACATGATCAAAGAATTGCCATTTAAAGGAGGAACATCTTGGTTTTCTTGCATCTCGTCAGAAACTATCTATGATTTTGAATATCCGCATGTTTGCATTTAGAACTGGATGAATTATTTGCACTGCTTGATCGGATATATTTTTATATAATTTGCATTTTTGCTTTCATTTCTTTGAGTTCCTCTAGCAAATGAGCAAGCATGTACTATTGATTTTGGATTAGAGATTCGTGGTCTCTACTTTGTCGATGGAAGAAAAAATACTGAAACATCTTATGTAAAGGGTCGTAAGGCACTATTTTAATGGCTCATTGAATTCACTTTGACTTTTCATTTCTTTCAATTTATCTAATTTTTTTTCTTACATCAAGTCACAATATATTGGAAAAATTATTTTTT

Coding sequence (CDS)

ATGGTATTGTTTGATCAGGGAACCTATGACAAGCTTCTTTCAGAAGCTCCAAAGTTCAAGCTTATTACTCCTTCCATCCTTTCTGACAGATTAAGGATCAATGGATCATTGGCACGTCGGGCGATCAAGGATTTAATGGCGAGAGGTTCTATCCGGCTCATATCTGCTCATTCTAGCCAGCAAATATACACTAGAGCCACAAATACATGA

Protein sequence

MVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT

Homology

[Close]

BLAST of Cmc08g0226671 vs. NCBI nr
Match: KAA0060056.1 (40S ribosomal protein S25-2 [Cucumis melo var. makuwa] >TYK29867.1 40S ribosomal protein S25-2 [Cucumis melo var. makuwa])

HSP 1 Score: 132.5 bits (332), Expect = 1.4e-27
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1   MVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQ 60
           MVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQ
Sbjct: 64  MVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQ 123

Query: 61  QIYTRATNT 70
           QIYTRATNT
Sbjct: 124 QIYTRATNT 132

[Close]

BLAST of Cmc08g0226671 vs. NCBI nr
Match: XP_008442240.1 (PREDICTED: 40S ribosomal protein S25-2 [Cucumis melo])

HSP 1 Score: 132.5 bits (332), Expect = 1.4e-27
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1   MVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQ 60
           MVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQ
Sbjct: 40  MVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQ 99

Query: 61  QIYTRATNT 70
           QIYTRATNT
Sbjct: 100 QIYTRATNT 108

[Close]

BLAST of Cmc08g0226671 vs. NCBI nr
Match: XP_004291591.1 (PREDICTED: 40S ribosomal protein S25-2 [Fragaria vesca subsp. vesca])

HSP 1 Score: 130.6 bits (327), Expect = 5.3e-27
Identity = 67/69 (97.10%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1   MVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQ 60
           MVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIR+ISAH+SQ
Sbjct: 40  MVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQ 99

Query: 61  QIYTRATNT 70
           QIYTRATNT
Sbjct: 100 QIYTRATNT 108

[Close]

BLAST of Cmc08g0226671 vs. NCBI nr
Match: XP_022142384.1 (40S ribosomal protein S25-2 [Momordica charantia])

HSP 1 Score: 130.2 bits (326), Expect = 6.9e-27
Identity = 67/69 (97.10%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1   MVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQ 60
           +VLFDQGTYDKLLSEAPK+KLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQ
Sbjct: 40  LVLFDQGTYDKLLSEAPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQ 99

Query: 61  QIYTRATNT 70
           QIYTRATNT
Sbjct: 100 QIYTRATNT 108

[Close]

BLAST of Cmc08g0226671 vs. NCBI nr
Match: XP_004144662.1 (40S ribosomal protein S25-2 [Cucumis sativus] >KGN54880.1 hypothetical protein Csa_012054 [Cucumis sativus])

HSP 1 Score: 129.4 bits (324), Expect = 1.2e-26
Identity = 66/69 (95.65%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1   MVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQ 60
           MVLFDQGTYDKL+SEAPKFKLITP+I+SDRLRINGSLARRAIKDLMARGSIRLISAHSSQ
Sbjct: 40  MVLFDQGTYDKLVSEAPKFKLITPAIISDRLRINGSLARRAIKDLMARGSIRLISAHSSQ 99

Query: 61  QIYTRATNT 70
           QIYTRATNT
Sbjct: 100 QIYTRATNT 108

[Close]

BLAST of Cmc08g0226671 vs. ExPASy Swiss-Prot
Match: Q9SIK2 (40S ribosomal protein S25-2 OS=Arabidopsis thaliana OX=3702 GN=RPS25B PE=3 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 1.1e-27
Identity = 61/69 (88.41%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 1   MVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQ 60
           MVLFDQGTYDKLL+EAPKFKLITPSILSDR+RINGSLARRAI++LMA+G IR++SAHSSQ
Sbjct: 40  MVLFDQGTYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELMAKGLIRMVSAHSSQ 99

Query: 61  QIYTRATNT 70
           QIYTRATNT
Sbjct: 100 QIYTRATNT 108

[Close]

BLAST of Cmc08g0226671 vs. ExPASy Swiss-Prot
Match: Q8GYL5 (40S ribosomal protein S25-3 OS=Arabidopsis thaliana OX=3702 GN=RPS25D PE=3 SV=2)

HSP 1 Score: 120.6 bits (301), Expect = 7.2e-27
Identity = 60/68 (88.24%), Postives = 67/68 (98.53%), Query Frame = 0


Query: 1   MVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQ 60
           MVLFDQ TYDKLLSEAPKFKLITPSILSDRLRINGSLARRAI++LMA+G+IR++SAHSSQ
Sbjct: 40  MVLFDQATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRELMAKGTIRMVSAHSSQ 99

Query: 61  QIYTRATN 69
           QIYTRAT+
Sbjct: 100 QIYTRATH 107

[Close]

BLAST of Cmc08g0226671 vs. ExPASy Swiss-Prot
Match: P46301 (40S ribosomal protein S25 OS=Solanum lycopersicum OX=4081 GN=RPS25 PE=3 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 7.2e-27
Identity = 59/69 (85.51%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 1   MVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQ 60
           MVLFD+ TYDKLLSEAPK+KLITPS+LSDRLRI+GSLAR+AI+DLMARGSIR++SAH+SQ
Sbjct: 40  MVLFDKSTYDKLLSEAPKYKLITPSVLSDRLRISGSLARKAIRDLMARGSIRMVSAHASQ 99

Query: 61  QIYTRATNT 70
           QIYTRATNT
Sbjct: 100 QIYTRATNT 108

[Close]

BLAST of Cmc08g0226671 vs. ExPASy Swiss-Prot
Match: Q9T029 (40S ribosomal protein S25-4 OS=Arabidopsis thaliana OX=3702 GN=RPS25E PE=3 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 1.2e-26
Identity = 59/69 (85.51%), Postives = 67/69 (97.10%), Query Frame = 0


Query: 1   MVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQ 60
           MVLFDQ TYDKLL+EAPKFKLITPSILSDR+RINGSLARRAI++LMA+G IR+++AHSSQ
Sbjct: 40  MVLFDQATYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELMAKGVIRMVAAHSSQ 99

Query: 61  QIYTRATNT 70
           QIYTRATNT
Sbjct: 100 QIYTRATNT 108

[Close]

BLAST of Cmc08g0226671 vs. ExPASy Swiss-Prot
Match: Q9SIW5 (40S ribosomal protein S25-1 OS=Arabidopsis thaliana OX=3702 GN=RPS25A PE=3 SV=3)

HSP 1 Score: 113.2 bits (282), Expect = 1.2e-24
Identity = 56/67 (83.58%), Postives = 63/67 (94.03%), Query Frame = 0


Query: 1   MVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQ 60
           MVLFDQ TYDKL+SEAPKFKLITPSILSDRLRINGSLAR+AI+DLM +G+IR++S HSSQ
Sbjct: 40  MVLFDQATYDKLMSEAPKFKLITPSILSDRLRINGSLARKAIRDLMVKGTIRMVSTHSSQ 99

Query: 61  QIYTRAT 68
           QI TRAT
Sbjct: 100 QINTRAT 106

[Close]

BLAST of Cmc08g0226671 vs. ExPASy TrEMBL
Match: A0A5A7V0P8 (40S ribosomal protein S25 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G001160 PE=3 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 6.8e-28
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1   MVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQ 60
           MVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQ
Sbjct: 64  MVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQ 123

Query: 61  QIYTRATNT 70
           QIYTRATNT
Sbjct: 124 QIYTRATNT 132

[Close]

BLAST of Cmc08g0226671 vs. ExPASy TrEMBL
Match: A0A1S3B608 (40S ribosomal protein S25 OS=Cucumis melo OX=3656 GN=LOC103486154 PE=3 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 6.8e-28
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1   MVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQ 60
           MVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQ
Sbjct: 40  MVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQ 99

Query: 61  QIYTRATNT 70
           QIYTRATNT
Sbjct: 100 QIYTRATNT 108

[Close]

BLAST of Cmc08g0226671 vs. ExPASy TrEMBL
Match: A0A6J1CLE7 (40S ribosomal protein S25 OS=Momordica charantia OX=3673 GN=LOC111012531 PE=3 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 3.4e-27
Identity = 67/69 (97.10%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1   MVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQ 60
           +VLFDQGTYDKLLSEAPK+KLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQ
Sbjct: 40  LVLFDQGTYDKLLSEAPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQ 99

Query: 61  QIYTRATNT 70
           QIYTRATNT
Sbjct: 100 QIYTRATNT 108

[Close]

BLAST of Cmc08g0226671 vs. ExPASy TrEMBL
Match: A0A0A0KYW1 (40S ribosomal protein S25 OS=Cucumis sativus OX=3659 GN=Csa_4G571760 PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 5.7e-27
Identity = 66/69 (95.65%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1   MVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQ 60
           MVLFDQGTYDKL+SEAPKFKLITP+I+SDRLRINGSLARRAIKDLMARGSIRLISAHSSQ
Sbjct: 40  MVLFDQGTYDKLVSEAPKFKLITPAIISDRLRINGSLARRAIKDLMARGSIRLISAHSSQ 99

Query: 61  QIYTRATNT 70
           QIYTRATNT
Sbjct: 100 QIYTRATNT 108

[Close]

BLAST of Cmc08g0226671 vs. ExPASy TrEMBL
Match: A0A5D3CKR9 (40S ribosomal protein S25 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold304G00850 PE=3 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 9.8e-27
Identity = 65/69 (94.20%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 1   MVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQ 60
           MVLFDQGTYDKLLSE PK+KL+TPSILSDRLRINGSLARRAIKDLMARGSIR+ISAHSSQ
Sbjct: 40  MVLFDQGTYDKLLSEVPKYKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQ 99

Query: 61  QIYTRATNT 70
           QIYTRATNT
Sbjct: 100 QIYTRATNT 108

[Close]

BLAST of Cmc08g0226671 vs. TAIR 10
Match: AT2G21580.1 (Ribosomal protein S25 family protein )

HSP 1 Score: 123.2 bits (308), Expect = 7.9e-29
Identity = 61/69 (88.41%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 1   MVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQ 60
           MVLFDQGTYDKLL+EAPKFKLITPSILSDR+RINGSLARRAI++LMA+G IR++SAHSSQ
Sbjct: 40  MVLFDQGTYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELMAKGLIRMVSAHSSQ 99

Query: 61  QIYTRATNT 70
           QIYTRATNT
Sbjct: 100 QIYTRATNT 108

[Close]

BLAST of Cmc08g0226671 vs. TAIR 10
Match: AT2G21580.2 (Ribosomal protein S25 family protein )

HSP 1 Score: 123.2 bits (308), Expect = 7.9e-29
Identity = 61/69 (88.41%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 1   MVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQ 60
           MVLFDQGTYDKLL+EAPKFKLITPSILSDR+RINGSLARRAI++LMA+G IR++SAHSSQ
Sbjct: 39  MVLFDQGTYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELMAKGLIRMVSAHSSQ 98

Query: 61  QIYTRATNT 70
           QIYTRATNT
Sbjct: 99  QIYTRATNT 107

[Close]

BLAST of Cmc08g0226671 vs. TAIR 10
Match: AT4G34555.1 (Ribosomal protein S25 family protein )

HSP 1 Score: 120.6 bits (301), Expect = 5.1e-28
Identity = 60/68 (88.24%), Postives = 67/68 (98.53%), Query Frame = 0


Query: 1   MVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQ 60
           MVLFDQ TYDKLLSEAPKFKLITPSILSDRLRINGSLARRAI++LMA+G+IR++SAHSSQ
Sbjct: 40  MVLFDQATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRELMAKGTIRMVSAHSSQ 99

Query: 61  QIYTRATN 69
           QIYTRAT+
Sbjct: 100 QIYTRATH 107

[Close]

BLAST of Cmc08g0226671 vs. TAIR 10
Match: AT4G39200.1 (Ribosomal protein S25 family protein )

HSP 1 Score: 119.8 bits (299), Expect = 8.7e-28
Identity = 59/69 (85.51%), Postives = 67/69 (97.10%), Query Frame = 0


Query: 1   MVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQ 60
           MVLFDQ TYDKLL+EAPKFKLITPSILSDR+RINGSLARRAI++LMA+G IR+++AHSSQ
Sbjct: 40  MVLFDQATYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELMAKGVIRMVAAHSSQ 99

Query: 61  QIYTRATNT 70
           QIYTRATNT
Sbjct: 100 QIYTRATNT 108

[Close]

BLAST of Cmc08g0226671 vs. TAIR 10
Match: AT4G39200.2 (Ribosomal protein S25 family protein )

HSP 1 Score: 119.8 bits (299), Expect = 8.7e-28
Identity = 59/69 (85.51%), Postives = 67/69 (97.10%), Query Frame = 0


Query: 1   MVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQ 60
           MVLFDQ TYDKLL+EAPKFKLITPSILSDR+RINGSLARRAI++LMA+G IR+++AHSSQ
Sbjct: 39  MVLFDQATYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELMAKGVIRMVAAHSSQ 98

Query: 61  QIYTRATNT 70
           QIYTRATNT
Sbjct: 99  QIYTRATNT 107

The following BLAST results are available for this feature:

BLAST of Cmc08g0226671 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0060056.1	1.4e-27	100.00	40S ribosomal protein S25-2 [Cucumis melo var. makuwa] >TYK29867.1 40S ribosomal...	[more]
XP_008442240.1	1.4e-27	100.00	PREDICTED: 40S ribosomal protein S25-2 [Cucumis melo]	[more]
XP_004291591.1	5.3e-27	97.10	PREDICTED: 40S ribosomal protein S25-2 [Fragaria vesca subsp. vesca]	[more]
XP_022142384.1	6.9e-27	97.10	40S ribosomal protein S25-2 [Momordica charantia]	[more]
XP_004144662.1	1.2e-26	95.65	40S ribosomal protein S25-2 [Cucumis sativus] >KGN54880.1 hypothetical protein C...	[more]

BLAST of Cmc08g0226671 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SIK2	1.1e-27	88.41	40S ribosomal protein S25-2 OS=Arabidopsis thaliana OX=3702 GN=RPS25B PE=3 SV=1	[more]
Q8GYL5	7.2e-27	88.24	40S ribosomal protein S25-3 OS=Arabidopsis thaliana OX=3702 GN=RPS25D PE=3 SV=2	[more]
P46301	7.2e-27	85.51	40S ribosomal protein S25 OS=Solanum lycopersicum OX=4081 GN=RPS25 PE=3 SV=1	[more]
Q9T029	1.2e-26	85.51	40S ribosomal protein S25-4 OS=Arabidopsis thaliana OX=3702 GN=RPS25E PE=3 SV=1	[more]
Q9SIW5	1.2e-24	83.58	40S ribosomal protein S25-1 OS=Arabidopsis thaliana OX=3702 GN=RPS25A PE=3 SV=3	[more]

BLAST of Cmc08g0226671 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V0P8	6.8e-28	100.00	40S ribosomal protein S25 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3B608	6.8e-28	100.00	40S ribosomal protein S25 OS=Cucumis melo OX=3656 GN=LOC103486154 PE=3 SV=1	[more]
A0A6J1CLE7	3.4e-27	97.10	40S ribosomal protein S25 OS=Momordica charantia OX=3673 GN=LOC111012531 PE=3 SV...	[more]
A0A0A0KYW1	5.7e-27	95.65	40S ribosomal protein S25 OS=Cucumis sativus OX=3659 GN=Csa_4G571760 PE=3 SV=1	[more]
A0A5D3CKR9	9.8e-27	94.20	40S ribosomal protein S25 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]

BLAST of Cmc08g0226671 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G21580.1	7.9e-29	88.41	Ribosomal protein S25 family protein	[more]
AT2G21580.2	7.9e-29	88.41	Ribosomal protein S25 family protein	[more]
AT4G34555.1	5.1e-28	88.24	Ribosomal protein S25 family protein	[more]
AT4G39200.1	8.7e-28	85.51	Ribosomal protein S25 family protein	[more]
AT4G39200.2	8.7e-28	85.51	Ribosomal protein S25 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004977	Ribosomal protein S25	PFAM	PF03297	Ribosomal_S25	coord: 1..66 e-value: 4.8E-26 score: 90.9
IPR004977	Ribosomal protein S25	PANTHER	PTHR12850	40S RIBOSOMAL PROTEIN S25	coord: 1..69
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 1..69 e-value: 1.9E-34 score: 119.4
None	No IPR available	PANTHER	PTHR12850:SF31	BNAA04G12260D PROTEIN	coord: 1..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0226671.1	Cmc08g0226671.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0022627	cytosolic small ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome