Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTGCTTGTTTATGAGTCTTCAATGCTTAATTACTACTCCCATTTCCCATGTATATATTCTTCGTATGCCATTCTTTAATTTGTGTCTTCTATCCGATTTTCATCTACACAGCAACGGTTGGTTCCTCATTTTTTTGGTACGTATGTGCATTCATGTCGTTTCAGTTCCATTGTGAAATTCTTCTTCGCAGTGTACCAATGCATTTCTCATTCATTCAACTTGCAATCCATGATACACCACTTGTTGTTGTTCATTTTACATGGCTTTCATATCTCCACATTTGACGAGGTCTCTGATTTGTAGCATTTTCTTCATTTTTTTAAATCATGTGCATGCGTTTCATATCTCCACATTTCCTACCATTGCATATGTGACAACACTTGGTTCACTCCATGAAGTTCGATTCCAAAATATTGGACGAACTTCCTCCCTCTGAGGCAATAATTCTTTTTTTAACATTGGTCACTTTTTTTCCGCACATAAATGTTAACTGTTTGTTTGTTTGTCATTTGTCCGTGTTCTAGGTCTATATTCAAATGTATGAACCCACATCCTTTGTTCCTTTTTTTCCCTACTCCATTATCAATAATTATCTGCTTCTTTAATGGCGTTTTTTCATTCTCGCTTCTGTAGTTAGCTCGAATACGTTGATTGAAAAGAAAAGGTACTGGGGTTTATACATCACTCCACTAAATTTTTTTATTTCGTGCGGCATGTGTTCATGTTTTTTCTTAGGCTATTTTAAACATTGTAAAATCTATAAACATTTTTCAGAACCATTCAGTATTTGGACTTTATACATAACTTCGGTAAATTAAAATTATAGTGTTTAGTATTTTTTTTTCTTTTGACAACGTTCTGCACGTGTTCTATTTTCTCGCTCCTTTATCCTATTCTTAGACCTTTTCCAAAGTATGCGTATTGTATAAAATGTACACCTACGACCCATAATTACAGTTCTTTAACTAAAAGATCACACTTTTTAATAAAGAAAATGCATACACAAAATGTTTGCCAAACAACATTCTTTTTAAGTTCGTTTTTAAAGGGAAAATAAAATTTGCACTTTTCATGTTGATTTAGGGAAGTTCTAAAATATATTTCTAAAAAAAAGGTCACGTGTGAAGTAGTTCAAGAAATGGGTGAAATTTTTCATTCCCAACAAATATTTATCTTTTCTTTTCTGCTTTGTAATGGAACACAATTTTCTTTTCCTCATTTCCAACGAATTCAACATTTTTAAGTTGCTTAAATTTTGATATGTAACTCATTTTGCAAAACTCGATATTTTTTTTTAATTTGCAGTTTCCTGCATAATAATAATTAAAAACAACTATTTACGATTGAACTTTCGGTCCACAGGCAAAAATCAGGTTTTCTAAATTTTGTGAATTATGCCAACTTTTATTAGAATTTACATTTTCCAGAGTTTTGGTTCTTCAATCTGTTAAACATTCAAATCAATACTTTCATGTTTTTCCTTTACCATCTTCAACATTTGTAAAGAAAAATGTATTTGGTTTAAATTGACTGCTAATATCGAAATCAACCAGTGATAAAATAGATAATTATTTCTAAACCCAATAGGAATATTTTACCACTTCCACCCGTCTTTGCAATGAGCCACAAATATGCCATTGTCTCGCGAACAAACATTGCTTTTAACCACGTTTACACCTCAATGTATGTGTTCCCTCTGTTCATTTTTTCGATGTCATTCTTATGCAACGTTATGTAGCAGGTTCTCCTTCCTGTAACTTCAAATGGATCTGTGGAAACTTGTTGTAGTTTTGTCTGCCTTCACAGTCAACCAACGTCTGATACTAATGACGTTGGATCAACTATTCTAAAAAGTAACATATCAGAGTATTACTACCTTTGTGGTGCAGGGTATCCAAAGCAAAGGGATTTCTTTCTCCTTATAGAGGACAACGATATCACGTCCAAGAGTGACGAGGAGCTGAAAACGCTCCAAAGACACTGAAGGAGTTCTTCAACATGAAACATTCATCCGTACGTAATGTTATTGAATGTGCGTTCAATATTTTGAAGGGTCGGTGGGCAATCCTCCACAGGAAGTCATACTACTCTGTTCAAGTGCAATGTCGCACTAGAATGGCGAGTTGTCTACTCCATAATCTAATAAATCGAGAGATGATGAATGTCGAAACTGAGGCCTCTAACGAATGGACTCAATGGAGGGATAGCCTTGCAGAGGCGATGTTCAGTGAATGGCAGTTACGTAACCACTAGTATTATCCTAGTTGTTGTAAAACCACTTTAATAATTTTATATGGAATATCATGTGTGTGACAATGGTTTTCATGTTATGTTTTTATGTATTGACTCATTTGTTTGACAAGTATCCTATTAATAGAATGGACTTTTTAATTCACAATGTGTTTTCTCTCCATATATGTCACTCACATTTATTTTTCGTAAAATCCATTTTCAGTATGGCCAACTCGTCGAGGAACCCAAAGCATTTATGGACGAAGGCAGTGGAGTCATGTCTCGTTGATTGCCTCGTGGACTTGGTTAACATGGAGGGAGGGAGGGCGGTGGAGGTCAGATAATGTGACCTTTAGACCTGGTTACCTACCCCAGTTGGTGAGAATGATGGGCGAGAGGATGCCAGGTTGCACTTTGACGTCCATAACTGTAATCGAAAGCAAGACCAAGCTATTGAAAAGAACGATCATGGCCATTGTCGAAATTCAGGGACCGACGTGTAGTGGCTTTGGATGGAACTATGAGCTTAAGTGCATCATTGCAGCAAAGGACGTCTTCGATAGTTGGGCCAGAGTAAGAAATTTTATGAATTTTGTGTTTACATCGATCTAATCAAATTGTGATTATGTTGTTTTAATTTTTCTTCATTTGTTTTTTTTTTTGCAGACGCATCTTGCATGCAAAGGCCTGCTTAACAAGCCCTTCCCCCATTACGATGAGTTGTCGTATGTCTTTGAGAAAGACTGCACCACGGGGGCCAGTGTAGAGATGTTCACTGATATAGGGTCAAATGTGCCAGGCGAAAGTGATGGAGTTCAAGCAGAAGATGGGTTGGATATGGAGTTCCCTACTATGTGCAGCCTGAGAATGAATGTGTCACTCGAGGACAGGATGGGTGCACGACCTAGTATGTCCACTGTCGATAGGATGGGTTTGAGTGGATCAAAGAGGAAGCGCAGAGGGCAGTTTGAGACTGTGGATGTTTTTCGCGATGCCATGCACATTTCCGATGACCAGCTCAGGGACATCGCATAATGGATAATGATAGCTAGGAAGGAGGAAGACTCTGTGCGGCGGGCCATCATTTACACATTTGCAGGTTATCCCTTAGCTCAATGTGGAGGACAGTGCACGCTGTATGATGGTCATAACCAAGAACTCCCTATCATGAAAGCTAGCCTTCTTGGACCTACCGGATGCGATGAAGCTCGCCTTTGCAACGTCAATTGGCACGATAACTCATAATTGGTCTACCACATCCACCGCATGACCCGTAGTTGTTTTGGCCTTCTGAACACTTTTTACTCTGAATTACTTTTTATGATCGCATTGACTTCACGTTTACCGTTATTTATAAGAATGACTTTTATTTTGTAACTCATGTTGTTTCAATGAATTTATGTTTGCACT
mRNA sequence
GTTGCTTGTTTATGAGTCTTCAATGCTTAATTACTACTCCCATTTCCCATGTATATATTCTTCGTATGCCATTCTTTAATTTGTGTCTTCTATCCGATTTTCATCTACACAGCAACGGTTGGTTCCTCATTTTTTTGGGTATCCAAAGCAAAGGGATTTCTTTCTCCTTATAGAGGACAACGATATCACGTCCAAGAGTGACGAGGAGCTGAAAACGCTCCAAAGACACTGAAGGAGTTCTTCAACATGAAACATTCATCCGTACGTAATGTTATTGAATGTGCGTTCAATATTTTGAAGGGTCGGTGGGCAATCCTCCACAGGAAGTCATACTACTCTGTTCAAGTGCAATGTCGCACTAGAATGGCGAGTTGTCTACTCCATAATCTAATAAATCGAGAGATGATGAATGTCGAAACTGAGGCCTCTAACGAATGGACTCAATGGAGGGATAGCCTTGCAGAGGCGATGTTCAGTGAATGGCAGTTACTATGGCCAACTCGTCGAGGAACCCAAAGCATTTATGGACGAAGGCAGTGGAGTCATGTCTCGTTGATTGCCTCGTGGACTTGGTTAACATGGAGGGAGGGAGGGCGGTGGAGGTCAGATAATGTGACCTTTAGACCTGGTTACCTACCCCAGTTGGTGAGAATGATGGGCGAGAGGATGCCAGGTTGCACTTTGACGTCCATAACTGTAATCGAAAGCAAGACCAAGCTATTGAAAAGAACGATCATGGCCATTGTCGAAATTCAGGGACCGACGTGTAGTGGCTTTGGATGGAACTATGAGCTTAAGTGCATCATTGCAGCAAAGGACGTCTTCGATAGTTGGGCCAGAACGCATCTTGCATGCAAAGGCCTGCTTAACAAGCCCTTCCCCCATTACGATGAGTTGTCGTATGTCTTTGAGAAAGACTGCACCACGGGGGCCAGTGTAGAGATGTTCACTGATATAGGGTCAAATGTGCCAGGCGAAAGTGATGGAGTTCAAGCAGAAGATGGGTTGGATATGGAGTTCCCTACTATGTGCAGCCTGAGAATGAATGTGTCACTCGAGGACAGGATGGGTGCACGACCTAGTATGTCCACTGTCGATAGGATGGGTTTGAGTGGATCAAAGAGGAAGCGCAGAGGGCAGTTTGAGACTGTGGATGTTTTTCGCGATGCCATGCACATTTCCGATGACCAGCTCAGGGACATCGCATAATGGATAATGATAGCTAGGAAGGAGGAAGACTCTGTGCGGCGGGCCATCATTTACACATTTGCAGGTTATCCCTTAGCTCAATGTGGAGGACAGTGCACGCTGTATGATGGTCATAACCAAGAACTCCCTATCATGAAAGCTAGCCTTCTTGGACCTACCGGATGCGATGAAGCTCGCCTTTGCAACGTCAATTGGCACGATAACTCATAATTGGTCTACCACATCCACCGCATGACCCGTAGTTGTTTTGGCCTTCTGAACACTTTTTACTCTGAATTACTTTTTATGATCGCATTGACTTCACGTTTACCGTTATTTATAAGAATGACTTTTATTTTGTAACTCATGTTGTTTCAATGAATTTATGTTTGCACT
Coding sequence (CDS)
ATGAAACATTCATCCGTACGTAATGTTATTGAATGTGCGTTCAATATTTTGAAGGGTCGGTGGGCAATCCTCCACAGGAAGTCATACTACTCTGTTCAAGTGCAATGTCGCACTAGAATGGCGAGTTGTCTACTCCATAATCTAATAAATCGAGAGATGATGAATGTCGAAACTGAGGCCTCTAACGAATGGACTCAATGGAGGGATAGCCTTGCAGAGGCGATGTTCAGTGAATGGCAGTTACTATGGCCAACTCGTCGAGGAACCCAAAGCATTTATGGACGAAGGCAGTGGAGTCATGTCTCGTTGATTGCCTCGTGGACTTGGTTAACATGGAGGGAGGGAGGGCGGTGGAGGTCAGATAATGTGACCTTTAGACCTGGTTACCTACCCCAGTTGGTGAGAATGATGGGCGAGAGGATGCCAGGTTGCACTTTGACGTCCATAACTGTAATCGAAAGCAAGACCAAGCTATTGAAAAGAACGATCATGGCCATTGTCGAAATTCAGGGACCGACGTGTAGTGGCTTTGGATGGAACTATGAGCTTAAGTGCATCATTGCAGCAAAGGACGTCTTCGATAGTTGGGCCAGAACGCATCTTGCATGCAAAGGCCTGCTTAACAAGCCCTTCCCCCATTACGATGAGTTGTCGTATGTCTTTGAGAAAGACTGCACCACGGGGGCCAGTGTAGAGATGTTCACTGATATAGGGTCAAATGTGCCAGGCGAAAGTGATGGAGTTCAAGCAGAAGATGGGTTGGATATGGAGTTCCCTACTATGTGCAGCCTGAGAATGAATGTGTCACTCGAGGACAGGATGGGTGCACGACCTAGTATGTCCACTGTCGATAGGATGGGTTTGAGTGGATCAAAGAGGAAGCGCAGAGGGCAGTTTGAGACTGTGGATGTTTTTCGCGATGCCATGCACATTTCCGATGACCAGCTCAGGGACATCGCATAA
Protein sequence
MKHSSVRNVIECAFNILKGRWAILHRKSYYSVQVQCRTRMASCLLHNLINREMMNVETEASNEWTQWRDSLAEAMFSEWQLLWPTRRGTQSIYGRRQWSHVSLIASWTWLTWREGGRWRSDNVTFRPGYLPQLVRMMGERMPGCTLTSITVIESKTKLLKRTIMAIVEIQGPTCSGFGWNYELKCIIAAKDVFDSWARTHLACKGLLNKPFPHYDELSYVFEKDCTTGASVEMFTDIGSNVPGESDGVQAEDGLDMEFPTMCSLRMNVSLEDRMGARPSMSTVDRMGLSGSKRKRRGQFETVDVFRDAMHISDDQLRDIA
Homology
BLAST of Cmc08g0226631 vs. NCBI nr
Match:
TYK29878.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 491.1 bits (1263), Expect = 7.2e-135
Identity = 235/239 (98.33%), Postives = 237/239 (99.16%), Query Frame = 0
Query: 82 LWPTRRGTQSIYGRRQWSHVSLIASWTWLTWREGGRWRSDNVTFRPGYLPQLVRMMGERM 141
LWPTRRGTQSIYGRRQWSHVSLIASWTWLTWREGGRWRSDNVTFRPGYLPQLVRMMGERM
Sbjct: 73 LWPTRRGTQSIYGRRQWSHVSLIASWTWLTWREGGRWRSDNVTFRPGYLPQLVRMMGERM 132
Query: 142 PGCTLTSITVIESKTKLLKRTIMAIVEIQGPTCSGFGWNYELKCIIAAKDVFDSWARTHL 201
PGCTLTSITVIESKTKLLKRTIMAIVEIQGPTCSGFGW+YELKCIIAAKDVFDSWARTHL
Sbjct: 133 PGCTLTSITVIESKTKLLKRTIMAIVEIQGPTCSGFGWHYELKCIIAAKDVFDSWARTHL 192
Query: 202 ACKGLLNKPFPHYDELSYVFEKDCTTGASVEMFTDIGSNVPGESDGVQAEDGLDMEFPTM 261
ACKGLLNKPFPHYDELSYVFEKD TTGASVEMFTDIGSNVPGESDGVQAEDGLDMEFPTM
Sbjct: 193 ACKGLLNKPFPHYDELSYVFEKDRTTGASVEMFTDIGSNVPGESDGVQAEDGLDMEFPTM 252
Query: 262 CSLRMNVSLEDRMGARPSMSTVDRMGLSGSKRKRRGQFETVDVFRDAMHISDDQLRDIA 321
CSLRMNVSLEDRMGARPSMSTVDRMG SGSKRKRRGQFETVDVFRDAMHIS+DQLRDIA
Sbjct: 253 CSLRMNVSLEDRMGARPSMSTVDRMGSSGSKRKRRGQFETVDVFRDAMHISNDQLRDIA 311
BLAST of Cmc08g0226631 vs. NCBI nr
Match:
KAA0060069.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 336.3 bits (861), Expect = 3.0e-88
Identity = 174/239 (72.80%), Postives = 175/239 (73.22%), Query Frame = 0
Query: 82 LWPTRRGTQSIYGRRQWSHVSLIASWTWLTWREGGRWRSDNVTFRPGYLPQLVRMMGERM 141
LWPTRRGTQSIYGRRQWSHVSLIASWTWLTWREGGRWRSDNVTFRPGYLPQLVRMMGERM
Sbjct: 73 LWPTRRGTQSIYGRRQWSHVSLIASWTWLTWREGGRWRSDNVTFRPGYLPQLVRMMGERM 132
Query: 142 PGCTLTSITVIESKTKLLKRTIMAIVEIQGPTCSGFGWNYELKCIIAAKDVFDSWARTHL 201
P
Sbjct: 133 P----------------------------------------------------------- 192
Query: 202 ACKGLLNKPFPHYDELSYVFEKDCTTGASVEMFTDIGSNVPGESDGVQAEDGLDMEFPTM 261
GLLNKPFPHYDELSYVFEKD TTGASVEMFTDIGSNVPGESDGVQAEDGLDMEFPTM
Sbjct: 193 ---GLLNKPFPHYDELSYVFEKDRTTGASVEMFTDIGSNVPGESDGVQAEDGLDMEFPTM 249
Query: 262 CSLRMNVSLEDRMGARPSMSTVDRMGLSGSKRKRRGQFETVDVFRDAMHISDDQLRDIA 321
CSLRMNVSLEDRMGARPSMSTVDRMG SGSKRKRRGQFETVDVFRDAMHIS+DQLRDIA
Sbjct: 253 CSLRMNVSLEDRMGARPSMSTVDRMGSSGSKRKRRGQFETVDVFRDAMHISNDQLRDIA 249
BLAST of Cmc08g0226631 vs. NCBI nr
Match:
ADN33754.1 (retrotransposon protein [Cucumis melo subsp. melo])
HSP 1 Score: 291.6 bits (745), Expect = 8.4e-75
Identity = 164/345 (47.54%), Postives = 210/345 (60.87%), Query Frame = 0
Query: 1 MKHSSVRNVIECAFNILKGRWAILHRKSYYSVQVQCRTRMASCLLHNLINREMM---NVE 60
MKHSS RNVIE AF +LKGRW IL KSYY +QVQCRT +A LLHNLINREM +VE
Sbjct: 231 MKHSSARNVIERAFGVLKGRWTILRGKSYYPLQVQCRTILACTLLHNLINREMTYCNDVE 290
Query: 61 --------------------TEASNEWTQWRDSLAEAMFSEWQLLWPTRRGTQSIYGRRQ 120
E +NEW+QWRD LA +MF++WQ RG S
Sbjct: 291 DEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLATSMFTDWQF-----RGGDS------ 350
Query: 121 WSHVSLIASWTWLTWREGGRWRSDNVTFRPGYLPQLVRMMGERMPGCTLTSITVIESKTK 180
+ L++ G W+SDN TFRPGYL QLVRMM E++ GC + + TVI+ + K
Sbjct: 351 -CGMELVSM---------GGWKSDNGTFRPGYLAQLVRMMAEKLSGCQVRATTVIDCRIK 410
Query: 181 LLKRTIMAIVEIQGPTCSGFGWNYELKCIIAAKDVFDSWARTHLACKGLLNKPFPHYDEL 240
LKRT AI E+ GP CSGFGWN E KCI+A K++FD+W R+ A KGLLN PFP+YDEL
Sbjct: 411 TLKRTFQAIAEMLGPACSGFGWNDEEKCIVAEKELFDNWVRSPPAAKGLLNNPFPYYDEL 470
Query: 241 SYVFEKDCTTGASVEMFTDIGSNVPGES-DGVQAEDGLDMEFPTMCSLRMNVSLEDRMGA 300
+YVF +D TG E F D+GSN PG D DG + +FP + S +++ +D +
Sbjct: 471 TYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDG-NEDFPPVYSRGVDILQDDVRAS 530
Query: 301 RPSMSTVDRMGLSGSKRKRRGQFE-TVDVFRDAMHISDDQLRDIA 321
RPS ++ + G SGSKRKR Q + V+ A+ +++QLR IA
Sbjct: 531 RPSRASEGKTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQLRQIA 553
BLAST of Cmc08g0226631 vs. NCBI nr
Match:
ADN34114.1 (retrotransposon protein [Cucumis melo subsp. melo])
HSP 1 Score: 283.1 bits (723), Expect = 3.0e-72
Identity = 165/343 (48.10%), Postives = 201/343 (58.60%), Query Frame = 0
Query: 1 MKHSSVRNVIECAFNILKGRWAILHRKSYYSVQVQCRTRMASCLLHNLINREMMNVE--- 60
MKH S RNVIE AF +LKGRWAIL KSYY V+VQCRT +A CLLHNLINREM N +
Sbjct: 259 MKHYSARNVIERAFGVLKGRWAILRGKSYYPVEVQCRTILACCLLHNLINREMTNFDIED 318
Query: 61 -------------------TEASNEWTQWRDSLAEAMFSEWQLLWPTRRGTQSIYGRRQW 120
E SNEW+QWRD+LAE + + L P T+
Sbjct: 319 NIDEVDSTHATTAADDIHYIETSNEWSQWRDNLAEEIMTSSSRL-PKHTWTKE------- 378
Query: 121 SHVSLIASWTWLTWREGGRWRSDNVTFRPGYLPQLVRMMGERMPGCTLTSITVIESKTKL 180
L+ L G WRSDN TFRPGYL QL RMM ++PG + + T I+S+ KL
Sbjct: 379 EEAGLVECLVELV--NAGGWRSDNGTFRPGYLNQLARMMAFKIPGSNIHAST-IDSRIKL 438
Query: 181 LKRTIMAIVEIQGPTCSGFGWNYELKCIIAAKDVFDSWARTHLACKGLLNKPFPHYDELS 240
+KR A+ E++GP CSGFGWN E KCI+A K+VFD W +H A KGLLNK F HYDELS
Sbjct: 439 MKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKGLLNKSFVHYDELS 498
Query: 241 YVFEKDCTTGASVEMFTDIGSNVPGESDGVQAEDGLDMEFPTMCSLRMNVSLEDRMGARP 300
YVF KD TG E F DIGSN P D A+ D +FP M S +N+S +D M R
Sbjct: 499 YVFGKDRATGGRAESFADIGSNDPPGYDAGAADAMPDTDFPPMYSPGLNMSPDDLMETRT 558
Query: 301 SMSTVDRMGLSGSKRKRRGQ-FETVDVFRDAMHISDDQLRDIA 321
+ + R SGSKRKR G ++ D+ R A+ ++QL IA
Sbjct: 559 ARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIA 588
BLAST of Cmc08g0226631 vs. NCBI nr
Match:
TYK03086.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 274.6 bits (701), Expect = 1.1e-69
Identity = 156/344 (45.35%), Postives = 197/344 (57.27%), Query Frame = 0
Query: 1 MKHSSVRNVIECAFNILKGRWAILHRKSYYSVQVQCRTRMASCLLHNLINREMMNVE--- 60
M HSSVRNVIE AF++LK RW IL+ KSYY +QVQC T +A CLLHNLINREM +
Sbjct: 104 MSHSSVRNVIERAFDVLKDRWTILNGKSYYPLQVQCHTILACCLLHNLINREMTYCDDVD 163
Query: 61 --------------------TEASNEWTQWRDSLAEAMFSEWQLLWPTRRGTQSIYGRRQ 120
E +NEW+QWRD LAE+MF+ WQL
Sbjct: 164 YVDEGDSRYATTTASEDIQYIETTNEWSQWRDELAESMFTNWQLY--------------- 223
Query: 121 WSHVSLIASWTWLTWREGGRWRSDNVTFRPGYLPQLVRMMGERMPGCTLTSITVIESKTK 180
N TFRPGYL QLV MM E++P C + + TVI+ + K
Sbjct: 224 ------------------------NGTFRPGYLDQLVHMMAEKLPECQVRATTVIDYRIK 283
Query: 181 LLKRTIMAIVEIQGPTCSGFGWNYELKCIIAAKDVFDSWARTHLACKGLLNKPFPHYDEL 240
LKR AI E++GP SGFGWN E KCIIA K++FD+W R+H A KGLLNK FP+Y+EL
Sbjct: 284 TLKRIFQAIAEMRGPAYSGFGWNNEEKCIIAEKELFDNWVRSHPAAKGLLNKLFPYYNEL 343
Query: 241 SYVFEKDCTTGASVEMFTDIGSNVPGESDGVQAEDGLDMEFPTMCSLRMNVSLEDRMGAR 300
+YVF +D TTG E F D+GSN PG D DG + EF + S M++S +D +R
Sbjct: 344 TYVFSRDRTTGRFAETFADLGSNEPGRYDRFDMGDG-NKEFLPVYSQGMDLSQDDVRASR 403
Query: 301 PSMSTVDRMGLSGSKRKRRGQFE-TVDVFRDAMHISDDQLRDIA 321
PS ++ R LSGSK+KR Q + V A+ +++QLR IA
Sbjct: 404 PSRASEGRTELSGSKKKRGSQRDLDVKGIHLALDQTNEQLRQIA 407
BLAST of Cmc08g0226631 vs. ExPASy TrEMBL
Match:
A0A5D3E267 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G001310 PE=4 SV=1)
HSP 1 Score: 491.1 bits (1263), Expect = 3.5e-135
Identity = 235/239 (98.33%), Postives = 237/239 (99.16%), Query Frame = 0
Query: 82 LWPTRRGTQSIYGRRQWSHVSLIASWTWLTWREGGRWRSDNVTFRPGYLPQLVRMMGERM 141
LWPTRRGTQSIYGRRQWSHVSLIASWTWLTWREGGRWRSDNVTFRPGYLPQLVRMMGERM
Sbjct: 73 LWPTRRGTQSIYGRRQWSHVSLIASWTWLTWREGGRWRSDNVTFRPGYLPQLVRMMGERM 132
Query: 142 PGCTLTSITVIESKTKLLKRTIMAIVEIQGPTCSGFGWNYELKCIIAAKDVFDSWARTHL 201
PGCTLTSITVIESKTKLLKRTIMAIVEIQGPTCSGFGW+YELKCIIAAKDVFDSWARTHL
Sbjct: 133 PGCTLTSITVIESKTKLLKRTIMAIVEIQGPTCSGFGWHYELKCIIAAKDVFDSWARTHL 192
Query: 202 ACKGLLNKPFPHYDELSYVFEKDCTTGASVEMFTDIGSNVPGESDGVQAEDGLDMEFPTM 261
ACKGLLNKPFPHYDELSYVFEKD TTGASVEMFTDIGSNVPGESDGVQAEDGLDMEFPTM
Sbjct: 193 ACKGLLNKPFPHYDELSYVFEKDRTTGASVEMFTDIGSNVPGESDGVQAEDGLDMEFPTM 252
Query: 262 CSLRMNVSLEDRMGARPSMSTVDRMGLSGSKRKRRGQFETVDVFRDAMHISDDQLRDIA 321
CSLRMNVSLEDRMGARPSMSTVDRMG SGSKRKRRGQFETVDVFRDAMHIS+DQLRDIA
Sbjct: 253 CSLRMNVSLEDRMGARPSMSTVDRMGSSGSKRKRRGQFETVDVFRDAMHISNDQLRDIA 311
BLAST of Cmc08g0226631 vs. ExPASy TrEMBL
Match:
A0A5A7V2R5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold160G00370 PE=4 SV=1)
HSP 1 Score: 336.3 bits (861), Expect = 1.4e-88
Identity = 174/239 (72.80%), Postives = 175/239 (73.22%), Query Frame = 0
Query: 82 LWPTRRGTQSIYGRRQWSHVSLIASWTWLTWREGGRWRSDNVTFRPGYLPQLVRMMGERM 141
LWPTRRGTQSIYGRRQWSHVSLIASWTWLTWREGGRWRSDNVTFRPGYLPQLVRMMGERM
Sbjct: 73 LWPTRRGTQSIYGRRQWSHVSLIASWTWLTWREGGRWRSDNVTFRPGYLPQLVRMMGERM 132
Query: 142 PGCTLTSITVIESKTKLLKRTIMAIVEIQGPTCSGFGWNYELKCIIAAKDVFDSWARTHL 201
P
Sbjct: 133 P----------------------------------------------------------- 192
Query: 202 ACKGLLNKPFPHYDELSYVFEKDCTTGASVEMFTDIGSNVPGESDGVQAEDGLDMEFPTM 261
GLLNKPFPHYDELSYVFEKD TTGASVEMFTDIGSNVPGESDGVQAEDGLDMEFPTM
Sbjct: 193 ---GLLNKPFPHYDELSYVFEKDRTTGASVEMFTDIGSNVPGESDGVQAEDGLDMEFPTM 249
Query: 262 CSLRMNVSLEDRMGARPSMSTVDRMGLSGSKRKRRGQFETVDVFRDAMHISDDQLRDIA 321
CSLRMNVSLEDRMGARPSMSTVDRMG SGSKRKRRGQFETVDVFRDAMHIS+DQLRDIA
Sbjct: 253 CSLRMNVSLEDRMGARPSMSTVDRMGSSGSKRKRRGQFETVDVFRDAMHISNDQLRDIA 249
BLAST of Cmc08g0226631 vs. ExPASy TrEMBL
Match:
E5GBB2 (Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)
HSP 1 Score: 291.6 bits (745), Expect = 4.0e-75
Identity = 164/345 (47.54%), Postives = 210/345 (60.87%), Query Frame = 0
Query: 1 MKHSSVRNVIECAFNILKGRWAILHRKSYYSVQVQCRTRMASCLLHNLINREMM---NVE 60
MKHSS RNVIE AF +LKGRW IL KSYY +QVQCRT +A LLHNLINREM +VE
Sbjct: 231 MKHSSARNVIERAFGVLKGRWTILRGKSYYPLQVQCRTILACTLLHNLINREMTYCNDVE 290
Query: 61 --------------------TEASNEWTQWRDSLAEAMFSEWQLLWPTRRGTQSIYGRRQ 120
E +NEW+QWRD LA +MF++WQ RG S
Sbjct: 291 DEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLATSMFTDWQF-----RGGDS------ 350
Query: 121 WSHVSLIASWTWLTWREGGRWRSDNVTFRPGYLPQLVRMMGERMPGCTLTSITVIESKTK 180
+ L++ G W+SDN TFRPGYL QLVRMM E++ GC + + TVI+ + K
Sbjct: 351 -CGMELVSM---------GGWKSDNGTFRPGYLAQLVRMMAEKLSGCQVRATTVIDCRIK 410
Query: 181 LLKRTIMAIVEIQGPTCSGFGWNYELKCIIAAKDVFDSWARTHLACKGLLNKPFPHYDEL 240
LKRT AI E+ GP CSGFGWN E KCI+A K++FD+W R+ A KGLLN PFP+YDEL
Sbjct: 411 TLKRTFQAIAEMLGPACSGFGWNDEEKCIVAEKELFDNWVRSPPAAKGLLNNPFPYYDEL 470
Query: 241 SYVFEKDCTTGASVEMFTDIGSNVPGES-DGVQAEDGLDMEFPTMCSLRMNVSLEDRMGA 300
+YVF +D TG E F D+GSN PG D DG + +FP + S +++ +D +
Sbjct: 471 TYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDG-NEDFPPVYSRGVDILQDDVRAS 530
Query: 301 RPSMSTVDRMGLSGSKRKRRGQFE-TVDVFRDAMHISDDQLRDIA 321
RPS ++ + G SGSKRKR Q + V+ A+ +++QLR IA
Sbjct: 531 RPSRASEGKTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQLRQIA 553
BLAST of Cmc08g0226631 vs. ExPASy TrEMBL
Match:
E5GCB5 (Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)
HSP 1 Score: 283.1 bits (723), Expect = 1.4e-72
Identity = 165/343 (48.10%), Postives = 201/343 (58.60%), Query Frame = 0
Query: 1 MKHSSVRNVIECAFNILKGRWAILHRKSYYSVQVQCRTRMASCLLHNLINREMMNVE--- 60
MKH S RNVIE AF +LKGRWAIL KSYY V+VQCRT +A CLLHNLINREM N +
Sbjct: 259 MKHYSARNVIERAFGVLKGRWAILRGKSYYPVEVQCRTILACCLLHNLINREMTNFDIED 318
Query: 61 -------------------TEASNEWTQWRDSLAEAMFSEWQLLWPTRRGTQSIYGRRQW 120
E SNEW+QWRD+LAE + + L P T+
Sbjct: 319 NIDEVDSTHATTAADDIHYIETSNEWSQWRDNLAEEIMTSSSRL-PKHTWTKE------- 378
Query: 121 SHVSLIASWTWLTWREGGRWRSDNVTFRPGYLPQLVRMMGERMPGCTLTSITVIESKTKL 180
L+ L G WRSDN TFRPGYL QL RMM ++PG + + T I+S+ KL
Sbjct: 379 EEAGLVECLVELV--NAGGWRSDNGTFRPGYLNQLARMMAFKIPGSNIHAST-IDSRIKL 438
Query: 181 LKRTIMAIVEIQGPTCSGFGWNYELKCIIAAKDVFDSWARTHLACKGLLNKPFPHYDELS 240
+KR A+ E++GP CSGFGWN E KCI+A K+VFD W +H A KGLLNK F HYDELS
Sbjct: 439 MKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKGLLNKSFVHYDELS 498
Query: 241 YVFEKDCTTGASVEMFTDIGSNVPGESDGVQAEDGLDMEFPTMCSLRMNVSLEDRMGARP 300
YVF KD TG E F DIGSN P D A+ D +FP M S +N+S +D M R
Sbjct: 499 YVFGKDRATGGRAESFADIGSNDPPGYDAGAADAMPDTDFPPMYSPGLNMSPDDLMETRT 558
Query: 301 SMSTVDRMGLSGSKRKRRGQ-FETVDVFRDAMHISDDQLRDIA 321
+ + R SGSKRKR G ++ D+ R A+ ++QL IA
Sbjct: 559 ARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIA 588
BLAST of Cmc08g0226631 vs. ExPASy TrEMBL
Match:
A0A5D3BY22 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46G001930 PE=3 SV=1)
HSP 1 Score: 274.6 bits (701), Expect = 5.1e-70
Identity = 156/344 (45.35%), Postives = 197/344 (57.27%), Query Frame = 0
Query: 1 MKHSSVRNVIECAFNILKGRWAILHRKSYYSVQVQCRTRMASCLLHNLINREMMNVE--- 60
M HSSVRNVIE AF++LK RW IL+ KSYY +QVQC T +A CLLHNLINREM +
Sbjct: 104 MSHSSVRNVIERAFDVLKDRWTILNGKSYYPLQVQCHTILACCLLHNLINREMTYCDDVD 163
Query: 61 --------------------TEASNEWTQWRDSLAEAMFSEWQLLWPTRRGTQSIYGRRQ 120
E +NEW+QWRD LAE+MF+ WQL
Sbjct: 164 YVDEGDSRYATTTASEDIQYIETTNEWSQWRDELAESMFTNWQLY--------------- 223
Query: 121 WSHVSLIASWTWLTWREGGRWRSDNVTFRPGYLPQLVRMMGERMPGCTLTSITVIESKTK 180
N TFRPGYL QLV MM E++P C + + TVI+ + K
Sbjct: 224 ------------------------NGTFRPGYLDQLVHMMAEKLPECQVRATTVIDYRIK 283
Query: 181 LLKRTIMAIVEIQGPTCSGFGWNYELKCIIAAKDVFDSWARTHLACKGLLNKPFPHYDEL 240
LKR AI E++GP SGFGWN E KCIIA K++FD+W R+H A KGLLNK FP+Y+EL
Sbjct: 284 TLKRIFQAIAEMRGPAYSGFGWNNEEKCIIAEKELFDNWVRSHPAAKGLLNKLFPYYNEL 343
Query: 241 SYVFEKDCTTGASVEMFTDIGSNVPGESDGVQAEDGLDMEFPTMCSLRMNVSLEDRMGAR 300
+YVF +D TTG E F D+GSN PG D DG + EF + S M++S +D +R
Sbjct: 344 TYVFSRDRTTGRFAETFADLGSNEPGRYDRFDMGDG-NKEFLPVYSQGMDLSQDDVRASR 403
Query: 301 PSMSTVDRMGLSGSKRKRRGQFE-TVDVFRDAMHISDDQLRDIA 321
PS ++ R LSGSK+KR Q + V A+ +++QLR IA
Sbjct: 404 PSRASEGRTELSGSKKKRGSQRDLDVKGIHLALDQTNEQLRQIA 407
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| TYK29878.1 | 7.2e-135 | 98.33 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| KAA0060069.1 | 3.0e-88 | 72.80 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| ADN33754.1 | 8.4e-75 | 47.54 | retrotransposon protein [Cucumis melo subsp. melo] | [more] |
| ADN34114.1 | 3.0e-72 | 48.10 | retrotransposon protein [Cucumis melo subsp. melo] | [more] |
| TYK03086.1 | 1.1e-69 | 45.35 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5D3E267 | 3.5e-135 | 98.33 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A5A7V2R5 | 1.4e-88 | 72.80 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| E5GBB2 | 4.0e-75 | 47.54 | Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1 | [more] |
| E5GCB5 | 1.4e-72 | 48.10 | Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1 | [more] |
| A0A5D3BY22 | 5.1e-70 | 45.35 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
