Cmc08g0226261 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0226261
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrotransposon protein
Location	CMiso1.1chr08: 17994600 .. 17995691 (+)
RNA-Seq Expression	Cmc08g0226261
Synteny	Cmc08g0226261

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTCGGCAAAGCACGCGGATGAATAGGCGAACATTCGCAATTCTATGCCATTTACTTAGAAATGTCGCTGGTCTTTCTTCAACTGAAATTGTCGATGTTGAGGAAATGGTAGCAATGTTCTTGCACGTCCTCGCTCATGACGTGAAGAACCGCGTCATACAACGAGAATTTGTACGCTCCGGTGAGACAGTATCTCGACATTTCAACATCGTATTGTTGGCTGTTCTTCGACTGTACGAGGAGTTGATAAAGAGACCTGTTCCGGTAACAAGTAACTGCAATGATCAACGTTGGAAGTGTTTCGAGGTGGGCATCGTAGAAGTTTACTATAATTGACCTTTAGGTACATCGCAGTTAATTCATCGCGTTTCTTTCAACCTGCAGAACTGCCTTGACGCGTTAGACGGGACGTACATAAAGGTGAACGTCCCCGCAGGAGATCGGCCTACTTTCAGAACGCGTAAGGGGGAAATTGCCACAAACGTTCTTGGGGTCTGTGACACGAAAGGGGATTTCGTTTATGTCCTCGCCGGTTGGGAAGGATCTGCAGCAGACTCGCGGATCCTACGTGATGCGATTTCACGAGAAAATGGACTACAAGTGCCAAAGGGTATATCTTGTTTATAATAAAACACCGTCGCTTCCTACTTACCTATTTAAAGTTCATAAACAAACCATTTAATAACAGGATATTATTATCTGTGCGATGCTGGATATCCAAACGCGGAGGGGTTTCTCGCCCCGTACAGAGGCCAGCGGTACCATTTGCAAGAGTGGCATGGTGCTGCAAATGCGCCAACAAATGCAAAGGAGTACTTCAACATGAAGCACTCCTCCACAAGGAATGTTATTGAGCGCGCGTTCGGTGTTCTAAAGGGTCGTTGGGCCATTCTTCGTGGAAAGTCGTACTATCCCCTGCAAGTCCAGTGTCGCACCATTCTAGCATGTGCCTTGCTTCACAATTTGATCAACAGGGAAATGACATATTGTGACGACGTTGAGGACGAGGACGAGGGGGACTCCACGTACGCAACGACCACCGCTTCAGAAGACATTCAGTACATTGAGACAACAAACGAGTGGTCTTAG

mRNA sequence

ATGTGTCGGCAAAGCACGCGGATGAATAGGCGAACATTCGCAATTCTATGCCATTTACTTAGAAATGTCGCTGGTCTTTCTTCAACTGAAATTGTCGATGTTGAGGAAATGGTAGCAATGTTCTTGCACGTCCTCGCTCATGACGTGAAGAACCGCGTCATACAACGAGAATTTGTACGCTCCGGTGAGACAGTATCTCGACATTTCAACATCGTATTGTTGGCTGTTCTTCGACTGTACGAGGAGTTGATAAAGAGACCTGTTCCGAACTGCCTTGACGCGTTAGACGGGACGTACATAAAGGTGAACGTCCCCGCAGGAGATCGGCCTACTTTCAGAACGCGTAAGGGGGAAATTGCCACAAACGTTCTTGGGGTCTGTGACACGAAAGGGGATTTCGTTTATGTCCTCGCCGGTTGGGAAGGATCTGCAGCAGACTCGCGGATCCTACGTGATGCGATTTCACGAGAAAATGGACTACAAGTGCCAAAGGGATATTATTATCTGTGCGATGCTGGATATCCAAACGCGGAGGGGTTTCTCGCCCCGTACAGAGGCCAGCGGTACCATTTGCAAGAGTGGCATGGTGCTGCAAATGCGCCAACAAATGCAAAGGAGTACTTCAACATGAAGCACTCCTCCACAAGGAATGTTATTGAGCGCGCGTTCGGTGTTCTAAAGGGTCGTTGGGCCATTCTTCGTGGAAAGTCGTACTATCCCCTGCAAGTCCAGTGTCGCACCATTCTAGCATGTGCCTTGCTTCACAATTTGATCAACAGGGAAATGACATATTGTGACGACGTTGAGGACGAGGACGAGGGGGACTCCACGTACGCAACGACCACCGCTTCAGAAGACATTCAGTACATTGAGACAACAAACGAGTGGTCTTAG

Coding sequence (CDS)

ATGTGTCGGCAAAGCACGCGGATGAATAGGCGAACATTCGCAATTCTATGCCATTTACTTAGAAATGTCGCTGGTCTTTCTTCAACTGAAATTGTCGATGTTGAGGAAATGGTAGCAATGTTCTTGCACGTCCTCGCTCATGACGTGAAGAACCGCGTCATACAACGAGAATTTGTACGCTCCGGTGAGACAGTATCTCGACATTTCAACATCGTATTGTTGGCTGTTCTTCGACTGTACGAGGAGTTGATAAAGAGACCTGTTCCGAACTGCCTTGACGCGTTAGACGGGACGTACATAAAGGTGAACGTCCCCGCAGGAGATCGGCCTACTTTCAGAACGCGTAAGGGGGAAATTGCCACAAACGTTCTTGGGGTCTGTGACACGAAAGGGGATTTCGTTTATGTCCTCGCCGGTTGGGAAGGATCTGCAGCAGACTCGCGGATCCTACGTGATGCGATTTCACGAGAAAATGGACTACAAGTGCCAAAGGGATATTATTATCTGTGCGATGCTGGATATCCAAACGCGGAGGGGTTTCTCGCCCCGTACAGAGGCCAGCGGTACCATTTGCAAGAGTGGCATGGTGCTGCAAATGCGCCAACAAATGCAAAGGAGTACTTCAACATGAAGCACTCCTCCACAAGGAATGTTATTGAGCGCGCGTTCGGTGTTCTAAAGGGTCGTTGGGCCATTCTTCGTGGAAAGTCGTACTATCCCCTGCAAGTCCAGTGTCGCACCATTCTAGCATGTGCCTTGCTTCACAATTTGATCAACAGGGAAATGACATATTGTGACGACGTTGAGGACGAGGACGAGGGGGACTCCACGTACGCAACGACCACCGCTTCAGAAGACATTCAGTACATTGAGACAACAAACGAGTGGTCTTAG

Protein sequence

MCRQSTRMNRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPNCLDALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKGYYYLCDAGYPNAEGFLAPYRGQRYHLQEWHGAANAPTNAKEYFNMKHSSTRNVIERAFGVLKGRWAILRGKSYYPLQVQCRTILACALLHNLINREMTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWS

Homology

[Close]

BLAST of Cmc08g0226261 vs. NCBI nr
Match: KAA0035776.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 595.5 bits (1534), Expect = 2.5e-166
Identity = 296/311 (95.18%), Postives = 297/311 (95.50%), Query Frame = 0


Query: 1   MCRQSTRMNRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVR 60
           MCRQSTRM+RRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVR
Sbjct: 33  MCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVR 92

Query: 61  SGETVSRHFNIVLLAVLRLYEELIKRPVP--------------NCLDALDGTYIKVNVPA 120
           SGETVSRHFNIVLLAVLRLYEELIKRPVP              NCLDALDGTYIKVNVPA
Sbjct: 93  SGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFENCLDALDGTYIKVNVPA 152

Query: 121 GDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKGY 180
           GDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKGY
Sbjct: 153 GDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKGY 212

Query: 181 YYLCDAGYPNAEGFLAPYRGQRYHLQEWHGAANAPTNAKEYFNMKHSSTRNVIERAFGVL 240
           YYLCDAGYPNAEGFLAPYRGQRYHLQEWHGAANAPTNAKEYFNMKHSSTRNVIERAFGVL
Sbjct: 213 YYLCDAGYPNAEGFLAPYRGQRYHLQEWHGAANAPTNAKEYFNMKHSSTRNVIERAFGVL 272

Query: 241 KGRWAILRGKSYYPLQVQCRTILACALLHNLINREMTYCDDVEDEDEGDSTYATTTASED 298
           KGRWAILRGKSYYPLQVQCRTILACALLHNLINREMTYCDDVEDEDEGDSTYATTTASED
Sbjct: 273 KGRWAILRGKSYYPLQVQCRTILACALLHNLINREMTYCDDVEDEDEGDSTYATTTASED 332

[Close]

BLAST of Cmc08g0226261 vs. NCBI nr
Match: KAA0051443.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 594.3 bits (1531), Expect = 5.6e-166
Identity = 291/297 (97.98%), Postives = 293/297 (98.65%), Query Frame = 0


Query: 1   MCRQSTRMNRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVR 60
           +CRQSTRM+RRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVR
Sbjct: 33  VCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVR 92

Query: 61  SGETVSRHFNIVLLAVLRLYEELIKRPVPNCLDALDGTYIKVNVPAGDRPTFRTRKGEIA 120
           SGETVSRHFNIVLLAVLRLYEELIKRPVPNCL ALDGTYIKVNVP GDRPTFRTRKGEIA
Sbjct: 93  SGETVSRHFNIVLLAVLRLYEELIKRPVPNCLGALDGTYIKVNVPTGDRPTFRTRKGEIA 152

Query: 121 TNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKGYYYLCDAGYPNAEGF 180
           TNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKGYYYLCDAGYPNAEGF
Sbjct: 153 TNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKGYYYLCDAGYPNAEGF 212

Query: 181 LAPYRGQRYHLQEWHGAANAPTNAKEYFNMKHSSTRNVIERAFGVLKGRWAILRGKSYYP 240
           LAPYRGQRYHLQEW GAANAPTNAKEYFNMKHSS RNVIERAFGVLKGRWAILRGKSYYP
Sbjct: 213 LAPYRGQRYHLQEWRGAANAPTNAKEYFNMKHSSARNVIERAFGVLKGRWAILRGKSYYP 272

Query: 241 LQVQCRTILACALLHNLINREMTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWS 298
           LQVQCRTILACALLHNLINREMTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWS
Sbjct: 273 LQVQCRTILACALLHNLINREMTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWS 329

[Close]

BLAST of Cmc08g0226261 vs. NCBI nr
Match: KAA0062587.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 591.7 bits (1524), Expect = 3.6e-165
Identity = 289/297 (97.31%), Postives = 294/297 (98.99%), Query Frame = 0


Query: 1   MCRQSTRMNRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVR 60
           +CRQSTRM+RRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVR
Sbjct: 33  VCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVR 92

Query: 61  SGETVSRHFNIVLLAVLRLYEELIKRPVPNCLDALDGTYIKVNVPAGDRPTFRTRKGEIA 120
           SGETVSRHFNIVLLAVLRLYEELIKRPVPNCL ALDGTYIKVNVPAGDRPTFRTRKGEIA
Sbjct: 93  SGETVSRHFNIVLLAVLRLYEELIKRPVPNCLGALDGTYIKVNVPAGDRPTFRTRKGEIA 152

Query: 121 TNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKGYYYLCDAGYPNAEGF 180
           TNVLGVCDTKGDFVYVLAGWEGSAADS+ILRDAISRENGLQVPKGYYYLCDAGYPNAEGF
Sbjct: 153 TNVLGVCDTKGDFVYVLAGWEGSAADSQILRDAISRENGLQVPKGYYYLCDAGYPNAEGF 212

Query: 181 LAPYRGQRYHLQEWHGAANAPTNAKEYFNMKHSSTRNVIERAFGVLKGRWAILRGKSYYP 240
           LAPYRGQRYHLQEW GAANAPTNAKEYFNMKHSS +NVIERAFGVLKGRWAILRGKSYYP
Sbjct: 213 LAPYRGQRYHLQEWRGAANAPTNAKEYFNMKHSSAKNVIERAFGVLKGRWAILRGKSYYP 272

Query: 241 LQVQCRTILACALLHNLINREMTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWS 298
           LQVQCRTILACALLHNLINREMTYCDDVEDEDEGDSTYATTTASEDIQYI+TTNEWS
Sbjct: 273 LQVQCRTILACALLHNLINREMTYCDDVEDEDEGDSTYATTTASEDIQYIKTTNEWS 329

[Close]

BLAST of Cmc08g0226261 vs. NCBI nr
Match: KAA0056561.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 586.3 bits (1510), Expect = 1.5e-163
Identity = 292/311 (93.89%), Postives = 294/311 (94.53%), Query Frame = 0


Query: 1   MCRQSTRMNRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVR 60
           +CRQSTRM+RRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVR
Sbjct: 33  VCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVR 92

Query: 61  SGETVSRHFNIVLLAVLRLYEELIKRPVP--------------NCLDALDGTYIKVNVPA 120
           SGETVSRHFNIVLLAVLRLYEELIKRPVP              NCL ALDGTYIKVNVPA
Sbjct: 93  SGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFENCLGALDGTYIKVNVPA 152

Query: 121 GDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKGY 180
           GDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKGY
Sbjct: 153 GDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKGY 212

Query: 181 YYLCDAGYPNAEGFLAPYRGQRYHLQEWHGAANAPTNAKEYFNMKHSSTRNVIERAFGVL 240
           YYLCDAGYPNAEGFLAPYRGQRYHLQEW GAANAPTNAKEYFNMKHSS RNVIERAFGVL
Sbjct: 213 YYLCDAGYPNAEGFLAPYRGQRYHLQEWRGAANAPTNAKEYFNMKHSSARNVIERAFGVL 272

Query: 241 KGRWAILRGKSYYPLQVQCRTILACALLHNLINREMTYCDDVEDEDEGDSTYATTTASED 298
           KGRWAILRGKSYYPLQVQCRTILACALLHNLINREMTYCDDVEDEDEGDSTYATTTASED
Sbjct: 273 KGRWAILRGKSYYPLQVQCRTILACALLHNLINREMTYCDDVEDEDEGDSTYATTTASED 332

[Close]

BLAST of Cmc08g0226261 vs. NCBI nr
Match: KAA0031556.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0033743.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0036353.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0038064.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0038976.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 586.3 bits (1510), Expect = 1.5e-163
Identity = 292/311 (93.89%), Postives = 294/311 (94.53%), Query Frame = 0


Query: 1   MCRQSTRMNRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVR 60
           +CRQSTRM+RRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVR
Sbjct: 33  VCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVR 92

Query: 61  SGETVSRHFNIVLLAVLRLYEELIKRPVP--------------NCLDALDGTYIKVNVPA 120
           SGETVSRHFNIVLLAVLRLYEELIKRPVP              NCL ALDGTYIKVNVPA
Sbjct: 93  SGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFENCLGALDGTYIKVNVPA 152

Query: 121 GDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKGY 180
           GDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKGY
Sbjct: 153 GDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKGY 212

Query: 181 YYLCDAGYPNAEGFLAPYRGQRYHLQEWHGAANAPTNAKEYFNMKHSSTRNVIERAFGVL 240
           YYLCDAGYPNAEGFLAPYRGQRYHLQEW GAANAPTNAKEYFNMKHSS RNVIERAFGVL
Sbjct: 213 YYLCDAGYPNAEGFLAPYRGQRYHLQEWRGAANAPTNAKEYFNMKHSSARNVIERAFGVL 272

Query: 241 KGRWAILRGKSYYPLQVQCRTILACALLHNLINREMTYCDDVEDEDEGDSTYATTTASED 298
           KGRWAILRGKSYYPLQVQCRTILACALLHNLINREMTYCDDVEDEDEGDSTYATTTASED
Sbjct: 273 KGRWAILRGKSYYPLQVQCRTILACALLHNLINREMTYCDDVEDEDEGDSTYATTTASED 332

[Close]

BLAST of Cmc08g0226261 vs. ExPASy TrEMBL
Match: A0A5A7T0N7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold403G00590 PE=3 SV=1)

HSP 1 Score: 595.5 bits (1534), Expect = 1.2e-166
Identity = 296/311 (95.18%), Postives = 297/311 (95.50%), Query Frame = 0


Query: 1   MCRQSTRMNRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVR 60
           MCRQSTRM+RRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVR
Sbjct: 33  MCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVR 92

Query: 61  SGETVSRHFNIVLLAVLRLYEELIKRPVP--------------NCLDALDGTYIKVNVPA 120
           SGETVSRHFNIVLLAVLRLYEELIKRPVP              NCLDALDGTYIKVNVPA
Sbjct: 93  SGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFENCLDALDGTYIKVNVPA 152

Query: 121 GDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKGY 180
           GDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKGY
Sbjct: 153 GDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKGY 212

Query: 181 YYLCDAGYPNAEGFLAPYRGQRYHLQEWHGAANAPTNAKEYFNMKHSSTRNVIERAFGVL 240
           YYLCDAGYPNAEGFLAPYRGQRYHLQEWHGAANAPTNAKEYFNMKHSSTRNVIERAFGVL
Sbjct: 213 YYLCDAGYPNAEGFLAPYRGQRYHLQEWHGAANAPTNAKEYFNMKHSSTRNVIERAFGVL 272

Query: 241 KGRWAILRGKSYYPLQVQCRTILACALLHNLINREMTYCDDVEDEDEGDSTYATTTASED 298
           KGRWAILRGKSYYPLQVQCRTILACALLHNLINREMTYCDDVEDEDEGDSTYATTTASED
Sbjct: 273 KGRWAILRGKSYYPLQVQCRTILACALLHNLINREMTYCDDVEDEDEGDSTYATTTASED 332

[Close]

BLAST of Cmc08g0226261 vs. ExPASy TrEMBL
Match: A0A5A7U6C1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G001970 PE=3 SV=1)

HSP 1 Score: 594.3 bits (1531), Expect = 2.7e-166
Identity = 291/297 (97.98%), Postives = 293/297 (98.65%), Query Frame = 0


Query: 1   MCRQSTRMNRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVR 60
           +CRQSTRM+RRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVR
Sbjct: 33  VCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVR 92

Query: 61  SGETVSRHFNIVLLAVLRLYEELIKRPVPNCLDALDGTYIKVNVPAGDRPTFRTRKGEIA 120
           SGETVSRHFNIVLLAVLRLYEELIKRPVPNCL ALDGTYIKVNVP GDRPTFRTRKGEIA
Sbjct: 93  SGETVSRHFNIVLLAVLRLYEELIKRPVPNCLGALDGTYIKVNVPTGDRPTFRTRKGEIA 152

Query: 121 TNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKGYYYLCDAGYPNAEGF 180
           TNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKGYYYLCDAGYPNAEGF
Sbjct: 153 TNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKGYYYLCDAGYPNAEGF 212

Query: 181 LAPYRGQRYHLQEWHGAANAPTNAKEYFNMKHSSTRNVIERAFGVLKGRWAILRGKSYYP 240
           LAPYRGQRYHLQEW GAANAPTNAKEYFNMKHSS RNVIERAFGVLKGRWAILRGKSYYP
Sbjct: 213 LAPYRGQRYHLQEWRGAANAPTNAKEYFNMKHSSARNVIERAFGVLKGRWAILRGKSYYP 272

Query: 241 LQVQCRTILACALLHNLINREMTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWS 298
           LQVQCRTILACALLHNLINREMTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWS
Sbjct: 273 LQVQCRTILACALLHNLINREMTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWS 329

[Close]

BLAST of Cmc08g0226261 vs. ExPASy TrEMBL
Match: A0A5A7V6J9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G00810 PE=3 SV=1)

HSP 1 Score: 591.7 bits (1524), Expect = 1.8e-165
Identity = 289/297 (97.31%), Postives = 294/297 (98.99%), Query Frame = 0


Query: 1   MCRQSTRMNRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVR 60
           +CRQSTRM+RRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVR
Sbjct: 33  VCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVR 92

Query: 61  SGETVSRHFNIVLLAVLRLYEELIKRPVPNCLDALDGTYIKVNVPAGDRPTFRTRKGEIA 120
           SGETVSRHFNIVLLAVLRLYEELIKRPVPNCL ALDGTYIKVNVPAGDRPTFRTRKGEIA
Sbjct: 93  SGETVSRHFNIVLLAVLRLYEELIKRPVPNCLGALDGTYIKVNVPAGDRPTFRTRKGEIA 152

Query: 121 TNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKGYYYLCDAGYPNAEGF 180
           TNVLGVCDTKGDFVYVLAGWEGSAADS+ILRDAISRENGLQVPKGYYYLCDAGYPNAEGF
Sbjct: 153 TNVLGVCDTKGDFVYVLAGWEGSAADSQILRDAISRENGLQVPKGYYYLCDAGYPNAEGF 212

Query: 181 LAPYRGQRYHLQEWHGAANAPTNAKEYFNMKHSSTRNVIERAFGVLKGRWAILRGKSYYP 240
           LAPYRGQRYHLQEW GAANAPTNAKEYFNMKHSS +NVIERAFGVLKGRWAILRGKSYYP
Sbjct: 213 LAPYRGQRYHLQEWRGAANAPTNAKEYFNMKHSSAKNVIERAFGVLKGRWAILRGKSYYP 272

Query: 241 LQVQCRTILACALLHNLINREMTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWS 298
           LQVQCRTILACALLHNLINREMTYCDDVEDEDEGDSTYATTTASEDIQYI+TTNEWS
Sbjct: 273 LQVQCRTILACALLHNLINREMTYCDDVEDEDEGDSTYATTTASEDIQYIKTTNEWS 329

[Close]

BLAST of Cmc08g0226261 vs. ExPASy TrEMBL
Match: A0A5D3D7X8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001080 PE=3 SV=1)

HSP 1 Score: 586.3 bits (1510), Expect = 7.4e-164
Identity = 292/311 (93.89%), Postives = 294/311 (94.53%), Query Frame = 0


Query: 1   MCRQSTRMNRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVR 60
           +CRQSTRM+RRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVR
Sbjct: 33  VCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVR 92

Query: 61  SGETVSRHFNIVLLAVLRLYEELIKRPVP--------------NCLDALDGTYIKVNVPA 120
           SGETVSRHFNIVLLAVLRLYEELIKRPVP              NCL ALDGTYIKVNVPA
Sbjct: 93  SGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFENCLGALDGTYIKVNVPA 152

Query: 121 GDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKGY 180
           GDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKGY
Sbjct: 153 GDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKGY 212

Query: 181 YYLCDAGYPNAEGFLAPYRGQRYHLQEWHGAANAPTNAKEYFNMKHSSTRNVIERAFGVL 240
           YYLCDAGYPNAEGFLAPYRGQRYHLQEW GAANAPTNAKEYFNMKHSS RNVIERAFGVL
Sbjct: 213 YYLCDAGYPNAEGFLAPYRGQRYHLQEWRGAANAPTNAKEYFNMKHSSARNVIERAFGVL 272

Query: 241 KGRWAILRGKSYYPLQVQCRTILACALLHNLINREMTYCDDVEDEDEGDSTYATTTASED 298
           KGRWAILRGKSYYPLQVQCRTILACALLHNLINREMTYCDDVEDEDEGDSTYATTTASED
Sbjct: 273 KGRWAILRGKSYYPLQVQCRTILACALLHNLINREMTYCDDVEDEDEGDSTYATTTASED 332

[Close]

BLAST of Cmc08g0226261 vs. ExPASy TrEMBL
Match: A0A5A7UST8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold288G00660 PE=3 SV=1)

HSP 1 Score: 586.3 bits (1510), Expect = 7.4e-164
Identity = 292/311 (93.89%), Postives = 294/311 (94.53%), Query Frame = 0


Query: 1   MCRQSTRMNRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVR 60
           +CRQSTRM+RRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVR
Sbjct: 33  VCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVR 92

Query: 61  SGETVSRHFNIVLLAVLRLYEELIKRPVP--------------NCLDALDGTYIKVNVPA 120
           SGETVSRHFNIVLLAVLRLYEELIKRPVP              NCL ALDGTYIKVNVPA
Sbjct: 93  SGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFENCLGALDGTYIKVNVPA 152

Query: 121 GDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKGY 180
           GDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKGY
Sbjct: 153 GDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKGY 212

Query: 181 YYLCDAGYPNAEGFLAPYRGQRYHLQEWHGAANAPTNAKEYFNMKHSSTRNVIERAFGVL 240
           YYLCDAGYPNAEGFLAPYRGQRYHLQEW GAANAPTNAKEYFNMKHSS RNVIERAFGVL
Sbjct: 213 YYLCDAGYPNAEGFLAPYRGQRYHLQEWRGAANAPTNAKEYFNMKHSSARNVIERAFGVL 272

Query: 241 KGRWAILRGKSYYPLQVQCRTILACALLHNLINREMTYCDDVEDEDEGDSTYATTTASED 298
           KGRWAILRGKSYYPLQVQCRTILACALLHNLINREMTYCDDVEDEDEGDSTYATTTASED
Sbjct: 273 KGRWAILRGKSYYPLQVQCRTILACALLHNLINREMTYCDDVEDEDEGDSTYATTTASED 332

[Close]

BLAST of Cmc08g0226261 vs. TAIR 10
Match: AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 185.3 bits (469), Expect = 7.3e-47
Identity = 103/273 (37.73%), Postives = 146/273 (53.48%), Query Frame = 0


Query: 2   CRQSTRMNRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRS 61
           C ++ RM++  F  LC LL+    L  T  + +E  +A+FL ++ H+++ R +Q  F  S
Sbjct: 42  CFENFRMDKPVFYKLCDLLQTRGLLRHTNRIKIEAQLAIFLFIIGHNLRTRAVQELFCYS 101

Query: 62  GETVSRHFNIVLLAVLRLYEELIKRPVPN-------------CLDALDGTYIKVNVPAGD 121
           GET+SRHFN VL AV+ + ++   +P  N             C+  +D  +I V V   +
Sbjct: 102 GETISRHFNNVLNAVIAISKDFF-QPNSNSDTLENDDPYFKDCVGVVDSFHIPVMVGVDE 161

Query: 122 RPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKGYYY 181
           +  FR   G +  NVL        F YVLAGWEGSA+D ++L  A++R N LQVP+G YY
Sbjct: 162 QGPFRNGNGLLTQNVLAASSFDLRFNYVLAGWEGSASDQQVLNAALTRRNKLQVPQGKYY 221

Query: 182 LCDAGYPNAEGFLAPYRGQRYHLQEWHGAANAPTNAKEYFNMKHSSTRNVIERAFGVLKG 241
           + D  YPN  GF+APY G          + N+   AKE FN +H      I R FG LK 
Sbjct: 222 IVDNKYPNLPGFIAPYHGV---------STNSREEAKEMFNERHKLLHRAIHRTFGALKE 281

Query: 242 RWAILRGKSYYPLQVQCRTILACALLHNLINRE 262
           R+ IL     YPLQ Q + ++A   LHN +  E
Sbjct: 282 RFPILLSAPPYPLQTQVKLVIAACALHNYVRLE 304

[Close]

BLAST of Cmc08g0226261 vs. TAIR 10
Match: AT1G43722.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28730.1); Has 924 Blast hits to 912 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 222; Fungi - 31; Plants - 661; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 130.6 bits (327), Expect = 2.1e-30
Identity = 85/255 (33.33%), Postives = 124/255 (48.63%), Query Frame = 0


Query: 2   CRQSTRMNRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRS 61
           C Q  RM+   F  LC++L+    L  T  + +EE VAMFL +  H+   R +   F R+
Sbjct: 66  CLQLLRMSLPCFTTLCNMLQTNYDLQPTLNISIEESVAMFLRICGHNEVYRDVGLRFGRN 125

Query: 62  GETVSRHFNIVLLAVLRLYEELIKRP-------VPNCLD--------------ALDGTYI 121
            ETV R F  VL A   L  + I+ P       +P  L               A+DGT++
Sbjct: 126 QETVQRKFREVLTATELLACDYIRTPTRQELYRIPERLQVDQRYWPYFSGFVGAMDGTHV 185

Query: 122 KVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENGL 181
            V V    +  +  R    + N++ +CD K  F Y+  G  GS  D+ +L+ A   ++  
Sbjct: 186 CVKVKPDLQGMYWNRHDNASLNIMAICDLKMLFTYIWNGAPGSCYDTAVLQIAQQSDSEF 245

Query: 182 QVPKG-YYYLCDAGYPNAEGFLAPYRGQ-----RYHLQEWHGAANAPTNAKEYFNMKHSS 230
            +P    YYL D+GYPN +G LAPYR       RYH+ +++     P N  E FN  H+S
Sbjct: 246 PLPPSEKYYLVDSGYPNKQGLLAPYRSSRNRVVRYHMSQFYYGPR-PRNKHELFNQCHTS 305

[Close]

BLAST of Cmc08g0226261 vs. TAIR 10
Match: AT5G35695.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 124.8 bits (312), Expect = 1.2e-28
Identity = 66/146 (45.21%), Postives = 87/146 (59.59%), Query Frame = 0


Query: 133 FVYVLAGWEGSAADSRILRDAISRENGLQVPKGYYYLCDAGYPNAEGFLAPYRGQRYHLQ 192
           F+YVL+GWEGSA DSR+L DA+ +          +YL D G+ N   FLAP+RG RYHLQ
Sbjct: 25  FIYVLSGWEGSAHDSRVLSDALRK----------FYLVDCGFANRLNFLAPFRGVRYHLQ 84

Query: 193 EWHGAANAPTNAKEYFNMKHSSTRNVIERAFGVLKGRWAILRGKSYYPLQVQCRTILACA 252
           E+ G    P    E FN++H S RNVIER FG+ K R+AI +    +  + Q   +L CA
Sbjct: 85  EFAGQRRDPETPHELFNLRHVSLRNVIERIFGIFKSRFAIFKSAPPFSYKKQAGLVLTCA 144

Query: 253 LLHNLINREMTYCD-DVEDE--DEGD 276
            LHN + +E    + D  DE  +EGD
Sbjct: 145 ALHNFLRKECRSDEADFPDEVGNEGD 160

[Close]

BLAST of Cmc08g0226261 vs. TAIR 10
Match: AT5G28730.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 496 Blast hits to 496 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 23; Plants - 470; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 101.7 bits (252), Expect = 1.1e-21
Identity = 72/218 (33.03%), Postives = 101/218 (46.33%), Query Frame = 0


Query: 2   CRQSTRMNRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRS 61
           C+   RM+   F  LC +L    GL S+  + ++E VA+FL + A +   R I   F  +
Sbjct: 24  CQTLIRMSSEAFTQLCEILHGKYGLQSSTNISLDESVAIFLIICASNDTQRDIALRFGHA 83

Query: 62  GETVSRHFNIVLLAVLRLYEELIKRPVPNCLDALDGTYIKVNVPAGDRPTFRTRKGEIAT 121
            ET+ R F+ VL A+ RL  E I+   P  ++ L     ++       P      G  + 
Sbjct: 84  QETIWRKFHDVLKAMERLAVEYIR---PRKVEELRAISNRLQDDTRYWPFLMDLLGIASF 143

Query: 122 NVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENGLQV-PKGYYYLCDAGYPNAEGF 181
           NVL +CD    F Y   G  GS  D+R+L  AIS +    V P   YYL D+GY N  G+
Sbjct: 144 NVLAICDLDMLFTYCFVGMAGSTHDARVLSAAISDDPLFHVPPDSKYYLVDSGYANKRGY 203

Query: 182 LAPYRGQRYHLQEWHGAANAPTNAKEYFNMKHSSTRNV 219
           LAPYR +    Q+         N  E  N+K     NV
Sbjct: 204 LAPYRREHREAQDIISNNFLTVNLFETHNIKDYDFDNV 238

[Close]

BLAST of Cmc08g0226261 vs. TAIR 10
Match: AT5G28950.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 448 Blast hits to 446 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 21; Plants - 396; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 79.3 bits (194), Expect = 5.6e-15
Identity = 36/76 (47.37%), Postives = 53/76 (69.74%), Query Frame = 0


Query: 90  NCLDALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRI 149
           +C+ A+D T+I   V     P+FR RKG+I+ N+L  C+   +F+YVL+GWEGSA DS++
Sbjct: 24  DCVGAIDDTHIFAMVSQKKMPSFRNRKGDISQNMLAACNFDVEFMYVLSGWEGSAHDSKV 83

Query: 150 LRDAISR-ENGLQVPK 165
           L DA++R  N L VP+
Sbjct: 84  LNDALTRNSNRLPVPE 99

The following BLAST results are available for this feature:

BLAST of Cmc08g0226261 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0035776.1	2.5e-166	95.18	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0051443.1	5.6e-166	97.98	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0062587.1	3.6e-165	97.31	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0056561.1	1.5e-163	93.89	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0031556.1	1.5e-163	93.89	retrotransposon protein [Cucumis melo var. makuwa] >KAA0033743.1 retrotransposon...	[more]

BLAST of Cmc08g0226261 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc08g0226261 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T0N7	1.2e-166	95.18	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7U6C1	2.7e-166	97.98	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7V6J9	1.8e-165	97.31	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3D7X8	7.4e-164	93.89	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UST8	7.4e-164	93.89	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of Cmc08g0226261 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G41980.1	7.3e-47	37.73	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int...	[more]
AT1G43722.1	2.1e-30	33.33	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G35695.1	1.2e-28	45.21	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int...	[more]
AT5G28730.1	1.1e-21	33.03	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G28950.1	5.6e-15	47.37	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027806	Harbinger transposase-derived nuclease domain	PFAM	PF13359	DDE_Tnp_4	coord: 95..256 e-value: 2.5E-26 score: 92.2
None	No IPR available	PANTHER	PTHR22930:SF211	NUCLEASE HARBI1-RELATED	coord: 2..283
None	No IPR available	PANTHER	PTHR22930	UNCHARACTERIZED	coord: 2..283

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0226261.1	Cmc08g0226261.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0046872	metal ion binding