Cmc08g0225921 (gene) Melon (Charmono) v1.1

Overview
NameCmc08g0225921
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
LocationCMiso1.1chr08: 17286249 .. 17286947 (-)
RNA-Seq ExpressionCmc08g0225921
SyntenyCmc08g0225921
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAAGGGACTATCCGGATGTCTTTCCTGAAGAACTTTCAGGGTTACCTCCTCACAGAGAGATTAAGTTTGCCATAGAGTTGGAGTCGGGCACGGTTCCTATATCGAGAGCCCCATATAGAATGGCCCCAGCAGAATTGAAAGAGTTGAAAGTGCAGTTACAGGAGTTGCTTGATAAAGGCTTCATTCGACTGAGTGTGTCACCTTGGGGTGCGCCAGTTTTATTTGTGAAGAGGAAGGATGGATCGATGCGCCTATGTCATGATTATAGGGAGTTGAATAAGGTAACCGTTAAGAACAGATATCCCTTGCCCAGGATCAACGATCTGTTTGACCAGTTACATGGAGCTACAGTGTTCTCTAGGATTGATCTTCGGTCGGGATATCATCAACTGAGGATTAAGGATGGTGATGTACCGAAGACATCCTTTCGTTCCAGATACGGACACTATGAGTTTATTGTGATGTCTTTTGGTTTGACAAATGCTCCGGCAGTGTTTATGGACTTGATGAACAGAGTGTTTAGGGAGTTCCTAGACACTTTTGTGATTGTGTTTATTGATGATATTTTGATATATTCCAAGACAGAGGCCGAGCATGAGGAGCATTTACGTATGGTTCTACAAACTCTTCGAGATAATAAATTGTATGCAAAGTTCTCGAAATGTGAGTTTTGGTTGAGGCAGGTTCCTTTCTAG

mRNA sequence

ATGGTAAGGGACTATCCGGATGTCTTTCCTGAAGAACTTTCAGGGTTACCTCCTCACAGAGAGATTAAGTTTGCCATAGAGTTGGAGTCGGGCACGGTTCCTATATCGAGAGCCCCATATAGAATGGCCCCAGCAGAATTGAAAGAGTTGAAAGTGCAGTTACAGGAGTTGCTTGATAAAGGCTTCATTCGACTGAGTGTGTCACCTTGGGGTGCGCCAGTTTTATTTGTGAAGAGGAAGGATGGATCGATGCGCCTATGTCATGATTATAGGGAGTTGAATAAGGTAACCGTTAAGAACAGATATCCCTTGCCCAGGATCAACGATCTGTTTGACCAGTTACATGGAGCTACAGTGTTCTCTAGGATTGATCTTCGGTCGGGATATCATCAACTGAGGATTAAGGATGGTGATGTACCGAAGACATCCTTTCGTTCCAGATACGGACACTATGAGTTTATTGTGATGTCTTTTGGTTTGACAAATGCTCCGGCAGTGTTTATGGACTTGATGAACAGAGTGTTTAGGGAGTTCCTAGACACTTTTGTGATTGTGTTTATTGATGATATTTTGATATATTCCAAGACAGAGGCCGAGCATGAGGAGCATTTACGTATGGTTCTACAAACTCTTCGAGATAATAAATTGTATGCAAAGTTCTCGAAATGTGAGTTTTGGTTGAGGCAGGTTCCTTTCTAG

Coding sequence (CDS)

ATGGTAAGGGACTATCCGGATGTCTTTCCTGAAGAACTTTCAGGGTTACCTCCTCACAGAGAGATTAAGTTTGCCATAGAGTTGGAGTCGGGCACGGTTCCTATATCGAGAGCCCCATATAGAATGGCCCCAGCAGAATTGAAAGAGTTGAAAGTGCAGTTACAGGAGTTGCTTGATAAAGGCTTCATTCGACTGAGTGTGTCACCTTGGGGTGCGCCAGTTTTATTTGTGAAGAGGAAGGATGGATCGATGCGCCTATGTCATGATTATAGGGAGTTGAATAAGGTAACCGTTAAGAACAGATATCCCTTGCCCAGGATCAACGATCTGTTTGACCAGTTACATGGAGCTACAGTGTTCTCTAGGATTGATCTTCGGTCGGGATATCATCAACTGAGGATTAAGGATGGTGATGTACCGAAGACATCCTTTCGTTCCAGATACGGACACTATGAGTTTATTGTGATGTCTTTTGGTTTGACAAATGCTCCGGCAGTGTTTATGGACTTGATGAACAGAGTGTTTAGGGAGTTCCTAGACACTTTTGTGATTGTGTTTATTGATGATATTTTGATATATTCCAAGACAGAGGCCGAGCATGAGGAGCATTTACGTATGGTTCTACAAACTCTTCGAGATAATAAATTGTATGCAAAGTTCTCGAAATGTGAGTTTTGGTTGAGGCAGGTTCCTTTCTAG

Protein sequence

MVRDYPDVFPEELSGLPPHREIKFAIELESGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRLSVSPWGAPVLFVKRKDGSMRLCHDYRELNKVTVKNRYPLPRINDLFDQLHGATVFSRIDLRSGYHQLRIKDGDVPKTSFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLRQVPF
Homology
[Close]
BLAST of Cmc08g0225921 vs. NCBI nr
Match: KAA0047433.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 449.1 bits (1154), Expect = 2.3e-122
Identity = 217/232 (93.53%), Postives = 226/232 (97.41%), Query Frame = 0 

Query: 1    MVRDYPDVFPEELSGLPPHREIKFAIELESGTVPISRAPYRMAPAELKELKVQLQELLDK 60
            +VRDYPDVFPEEL GLPPHRE++FAIELE GTVPISRAPYRMAPAELKELKVQLQELLDK
Sbjct: 1022 VVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDK 1081

Query: 61   GFIRLSVSPWGAPVLFVKRKDGSMRLCHDYRELNKVTVKNRYPLPRINDLFDQLHGATVF 120
            GFIR SVSPWGAPVLFVK+KDGSMRLC DYRELNKVTVKNRYPLPRI+DLFDQL GATVF
Sbjct: 1082 GFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVF 1141

Query: 121  SRIDLRSGYHQLRIKDGDVPKTSFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLD 180
            S+IDLRSGYHQLRIKDGDVPKT+FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLD
Sbjct: 1142 SKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLD 1201

Query: 181  TFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLRQVPF 233
            TFVIVFIDDILIYSKTEAEHEEHLR+VLQTLRDNKLYAKFSKCEFWL+QV F
Sbjct: 1202 TFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKQVSF 1253

[Close]
BLAST of Cmc08g0225921 vs. NCBI nr
Match: KAA0032356.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 448.7 bits (1153), Expect = 3.0e-122
Identity = 216/232 (93.10%), Postives = 226/232 (97.41%), Query Frame = 0 

Query: 1   MVRDYPDVFPEELSGLPPHREIKFAIELESGTVPISRAPYRMAPAELKELKVQLQELLDK 60
           +VRDYPDVFPEEL GLPPHRE++FAIELE GTVPISRAPYRMAPAELKELKVQLQELLDK
Sbjct: 521 VVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDK 580

Query: 61  GFIRLSVSPWGAPVLFVKRKDGSMRLCHDYRELNKVTVKNRYPLPRINDLFDQLHGATVF 120
           GFIR SVSPWGAP+LFVK+KDGSMRLC DYRELNKVTVKNRYPLPRI+DLFDQL GATVF
Sbjct: 581 GFIRPSVSPWGAPILFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVF 640

Query: 121 SRIDLRSGYHQLRIKDGDVPKTSFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLD 180
           S+IDLRSGYHQLRIKDGDVPKT+FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLD
Sbjct: 641 SKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLD 700

Query: 181 TFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLRQVPF 233
           TFVIVFIDDILIYSKTEAEHEEHLR+VLQTLRDNKLYAKFSKCEFWL+QV F
Sbjct: 701 TFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKQVSF 752

[Close]
BLAST of Cmc08g0225921 vs. NCBI nr
Match: KAA0043070.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 448.4 bits (1152), Expect = 3.9e-122
Identity = 216/232 (93.10%), Postives = 227/232 (97.84%), Query Frame = 0 

Query: 1   MVRDYPDVFPEELSGLPPHREIKFAIELESGTVPISRAPYRMAPAELKELKVQLQELLDK 60
           +VRDYPDVFPEEL GLPPHRE++FAIELESGTVPISRAPYRMAPA+LKELKVQLQELLDK
Sbjct: 449 VVRDYPDVFPEELPGLPPHREVEFAIELESGTVPISRAPYRMAPAQLKELKVQLQELLDK 508

Query: 61  GFIRLSVSPWGAPVLFVKRKDGSMRLCHDYRELNKVTVKNRYPLPRINDLFDQLHGATVF 120
           GFIR SVSPWGAPVLFVK+KDGSMRLC DYRELNKVTVKNRYPLPRI+DLFDQL GATVF
Sbjct: 509 GFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVF 568

Query: 121 SRIDLRSGYHQLRIKDGDVPKTSFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLD 180
           S+IDL+SGYHQLRIKDGDVPKT+FRSRYGH+EFIVMSFGLTNAPAVFMDLMNRVFREFLD
Sbjct: 569 SKIDLQSGYHQLRIKDGDVPKTAFRSRYGHFEFIVMSFGLTNAPAVFMDLMNRVFREFLD 628

Query: 181 TFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLRQVPF 233
           TFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWL+QV F
Sbjct: 629 TFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSF 680

[Close]
BLAST of Cmc08g0225921 vs. NCBI nr
Match: KAA0031931.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 448.0 bits (1151), Expect = 5.1e-122
Identity = 216/232 (93.10%), Postives = 226/232 (97.41%), Query Frame = 0 

Query: 1    MVRDYPDVFPEELSGLPPHREIKFAIELESGTVPISRAPYRMAPAELKELKVQLQELLDK 60
            +VRDYPDVFPEEL GLPPHRE++FAIELE GTVPISRAPYRMAPAELKELKVQLQELLDK
Sbjct: 911  VVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDK 970

Query: 61   GFIRLSVSPWGAPVLFVKRKDGSMRLCHDYRELNKVTVKNRYPLPRINDLFDQLHGATVF 120
            GFIR S+SPWGAPVLFVK+KDGSMRLC DYRELNKVTVKNRYPLPRI+DLFDQL GATVF
Sbjct: 971  GFIRPSMSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVF 1030

Query: 121  SRIDLRSGYHQLRIKDGDVPKTSFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLD 180
            S+IDLRSGYHQLRIKDGDVPKT+FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLD
Sbjct: 1031 SKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLD 1090

Query: 181  TFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLRQVPF 233
            TFVIVFIDDILIYSKTEAEHEEHLR+VLQTLRDNKLYAKFSKCEFWL+QV F
Sbjct: 1091 TFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKQVSF 1142

[Close]
BLAST of Cmc08g0225921 vs. NCBI nr
Match: KAA0036671.1 (gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 447.6 bits (1150), Expect = 6.6e-122
Identity = 217/232 (93.53%), Postives = 225/232 (96.98%), Query Frame = 0 

Query: 1    MVRDYPDVFPEELSGLPPHREIKFAIELESGTVPISRAPYRMAPAELKELKVQLQELLDK 60
            +VRDYPDVFPEEL GLPPHRE++FAIELE GTVPISRAPYRMAPAELKELKVQLQELLDK
Sbjct: 792  VVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDK 851

Query: 61   GFIRLSVSPWGAPVLFVKRKDGSMRLCHDYRELNKVTVKNRYPLPRINDLFDQLHGATVF 120
            GFIR SVSPWGAPVLFVK+KDGSMRLC DYRELNKVTVKNRYPLPRI+DLFDQL GATVF
Sbjct: 852  GFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVF 911

Query: 121  SRIDLRSGYHQLRIKDGDVPKTSFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLD 180
            S+IDLRSGYHQLRIKD DVPKT+FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLD
Sbjct: 912  SKIDLRSGYHQLRIKDEDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLD 971

Query: 181  TFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLRQVPF 233
            TFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWL+QV F
Sbjct: 972  TFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSF 1023

[Close]
BLAST of Cmc08g0225921 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 172.9 bits (437), Expect = 4.1e-42
Identity = 90/223 (40.36%), Postives = 135/223 (60.54%), Query Frame = 0 

Query: 10  PEELSGLPPHREIKFAIELESGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRLSVSP 69
           P +++ +P    +K  IE++ G       PY +     +E+   +Q+LLD  FI  S SP
Sbjct: 576 PADINNIP----VKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSP 635

Query: 70  WGAPVLFVKRKDGSMRLCHDYRELNKVTVKNRYPLPRINDLFDQLHGATVFSRIDLRSGY 129
             +PV+ V +KDG+ RLC DYR LNK T+ + +PLPRI++L  ++  A +F+ +DL SGY
Sbjct: 636 CSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGY 695

Query: 130 HQLRIKDGDVPKTSFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDD 189
           HQ+ ++  D  KT+F +  G YE+ VM FGL NAP+ F   M   FR+    FV V++DD
Sbjct: 696 HQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL--RFVNVYLDD 755

Query: 190 ILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLRQVPF 233
           ILI+S++  EH +HL  VL+ L++  L  K  KC+F   +  F
Sbjct: 756 ILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFASEETEF 792

[Close]
BLAST of Cmc08g0225921 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 172.9 bits (437), Expect = 4.1e-42
Identity = 90/223 (40.36%), Postives = 135/223 (60.54%), Query Frame = 0 

Query: 10  PEELSGLPPHREIKFAIELESGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRLSVSP 69
           P +++ +P    +K  IE++ G       PY +     +E+   +Q+LLD  FI  S SP
Sbjct: 602 PADINNIP----VKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSP 661

Query: 70  WGAPVLFVKRKDGSMRLCHDYRELNKVTVKNRYPLPRINDLFDQLHGATVFSRIDLRSGY 129
             +PV+ V +KDG+ RLC DYR LNK T+ + +PLPRI++L  ++  A +F+ +DL SGY
Sbjct: 662 CSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGY 721

Query: 130 HQLRIKDGDVPKTSFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDD 189
           HQ+ ++  D  KT+F +  G YE+ VM FGL NAP+ F   M   FR+    FV V++DD
Sbjct: 722 HQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL--RFVNVYLDD 781

Query: 190 ILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLRQVPF 233
           ILI+S++  EH +HL  VL+ L++  L  K  KC+F   +  F
Sbjct: 782 ILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFASEETEF 818

[Close]
BLAST of Cmc08g0225921 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 1.0e-40
Identity = 83/232 (35.78%), Postives = 142/232 (61.21%), Query Frame = 0 

Query: 3   RDYPDVFPE-ELSGLP-PHREIKFAIELESGTVPISRAPYRMAPAELKELKVQLQELLDK 62
           +++ D+  E     LP P + ++F +EL      +    Y + P +++ +  ++ + L  
Sbjct: 379 KEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIRNYPLPPGKMQAMNDEINQGLKS 438

Query: 63  GFIRLSVSPWGAPVLFVKRKDGSMRLCHDYRELNKVTVKNRYPLPRINDLFDQLHGATVF 122
           G IR S +    PV+FV +K+G++R+  DY+ LNK    N YPLP I  L  ++ G+T+F
Sbjct: 439 GIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIF 498

Query: 123 SRIDLRSGYHQLRIKDGDVPKTSFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLD 182
           +++DL+S YH +R++ GD  K +FR   G +E++VM +G++ APA F   +N +  E  +
Sbjct: 499 TKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKE 558

Query: 183 TFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLRQVPF 233
           + V+ ++DDILI+SK+E+EH +H++ VLQ L++  L    +KCEF   QV F
Sbjct: 559 SHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKF 610

[Close]
BLAST of Cmc08g0225921 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 1.0e-40
Identity = 83/232 (35.78%), Postives = 142/232 (61.21%), Query Frame = 0 

Query: 3   RDYPDVFPE-ELSGLP-PHREIKFAIELESGTVPISRAPYRMAPAELKELKVQLQELLDK 62
           +++ D+  E     LP P + ++F +EL      +    Y + P +++ +  ++ + L  
Sbjct: 379 KEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIRNYPLPPGKMQAMNDEINQGLKS 438

Query: 63  GFIRLSVSPWGAPVLFVKRKDGSMRLCHDYRELNKVTVKNRYPLPRINDLFDQLHGATVF 122
           G IR S +    PV+FV +K+G++R+  DY+ LNK    N YPLP I  L  ++ G+T+F
Sbjct: 439 GIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIF 498

Query: 123 SRIDLRSGYHQLRIKDGDVPKTSFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLD 182
           +++DL+S YH +R++ GD  K +FR   G +E++VM +G++ APA F   +N +  E  +
Sbjct: 499 TKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKE 558

Query: 183 TFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLRQVPF 233
           + V+ ++DDILI+SK+E+EH +H++ VLQ L++  L    +KCEF   QV F
Sbjct: 559 SHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKF 610

[Close]
BLAST of Cmc08g0225921 vs. ExPASy Swiss-Prot
Match: P0CT35 (Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-2 PE=3 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 1.0e-40
Identity = 83/232 (35.78%), Postives = 142/232 (61.21%), Query Frame = 0 

Query: 3   RDYPDVFPE-ELSGLP-PHREIKFAIELESGTVPISRAPYRMAPAELKELKVQLQELLDK 62
           +++ D+  E     LP P + ++F +EL      +    Y + P +++ +  ++ + L  
Sbjct: 379 KEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIRNYPLPPGKMQAMNDEINQGLKS 438

Query: 63  GFIRLSVSPWGAPVLFVKRKDGSMRLCHDYRELNKVTVKNRYPLPRINDLFDQLHGATVF 122
           G IR S +    PV+FV +K+G++R+  DY+ LNK    N YPLP I  L  ++ G+T+F
Sbjct: 439 GIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIF 498

Query: 123 SRIDLRSGYHQLRIKDGDVPKTSFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLD 182
           +++DL+S YH +R++ GD  K +FR   G +E++VM +G++ APA F   +N +  E  +
Sbjct: 499 TKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKE 558

Query: 183 TFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLRQVPF 233
           + V+ ++DDILI+SK+E+EH +H++ VLQ L++  L    +KCEF   QV F
Sbjct: 559 SHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKF 610

[Close]
BLAST of Cmc08g0225921 vs. ExPASy TrEMBL
Match: A0A5A7TV57 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00240 PE=4 SV=1)

HSP 1 Score: 449.1 bits (1154), Expect = 1.1e-122
Identity = 217/232 (93.53%), Postives = 226/232 (97.41%), Query Frame = 0 

Query: 1    MVRDYPDVFPEELSGLPPHREIKFAIELESGTVPISRAPYRMAPAELKELKVQLQELLDK 60
            +VRDYPDVFPEEL GLPPHRE++FAIELE GTVPISRAPYRMAPAELKELKVQLQELLDK
Sbjct: 1022 VVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDK 1081

Query: 61   GFIRLSVSPWGAPVLFVKRKDGSMRLCHDYRELNKVTVKNRYPLPRINDLFDQLHGATVF 120
            GFIR SVSPWGAPVLFVK+KDGSMRLC DYRELNKVTVKNRYPLPRI+DLFDQL GATVF
Sbjct: 1082 GFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVF 1141

Query: 121  SRIDLRSGYHQLRIKDGDVPKTSFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLD 180
            S+IDLRSGYHQLRIKDGDVPKT+FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLD
Sbjct: 1142 SKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLD 1201

Query: 181  TFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLRQVPF 233
            TFVIVFIDDILIYSKTEAEHEEHLR+VLQTLRDNKLYAKFSKCEFWL+QV F
Sbjct: 1202 TFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKQVSF 1253

[Close]
BLAST of Cmc08g0225921 vs. ExPASy TrEMBL
Match: A0A5A7SQP5 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002220 PE=4 SV=1)

HSP 1 Score: 448.7 bits (1153), Expect = 1.4e-122
Identity = 216/232 (93.10%), Postives = 226/232 (97.41%), Query Frame = 0 

Query: 1   MVRDYPDVFPEELSGLPPHREIKFAIELESGTVPISRAPYRMAPAELKELKVQLQELLDK 60
           +VRDYPDVFPEEL GLPPHRE++FAIELE GTVPISRAPYRMAPAELKELKVQLQELLDK
Sbjct: 521 VVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDK 580

Query: 61  GFIRLSVSPWGAPVLFVKRKDGSMRLCHDYRELNKVTVKNRYPLPRINDLFDQLHGATVF 120
           GFIR SVSPWGAP+LFVK+KDGSMRLC DYRELNKVTVKNRYPLPRI+DLFDQL GATVF
Sbjct: 581 GFIRPSVSPWGAPILFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVF 640

Query: 121 SRIDLRSGYHQLRIKDGDVPKTSFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLD 180
           S+IDLRSGYHQLRIKDGDVPKT+FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLD
Sbjct: 641 SKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLD 700

Query: 181 TFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLRQVPF 233
           TFVIVFIDDILIYSKTEAEHEEHLR+VLQTLRDNKLYAKFSKCEFWL+QV F
Sbjct: 701 TFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKQVSF 752

[Close]
BLAST of Cmc08g0225921 vs. ExPASy TrEMBL
Match: A0A5A7TIB4 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold158G00050 PE=4 SV=1)

HSP 1 Score: 448.4 bits (1152), Expect = 1.9e-122
Identity = 216/232 (93.10%), Postives = 227/232 (97.84%), Query Frame = 0 

Query: 1   MVRDYPDVFPEELSGLPPHREIKFAIELESGTVPISRAPYRMAPAELKELKVQLQELLDK 60
           +VRDYPDVFPEEL GLPPHRE++FAIELESGTVPISRAPYRMAPA+LKELKVQLQELLDK
Sbjct: 449 VVRDYPDVFPEELPGLPPHREVEFAIELESGTVPISRAPYRMAPAQLKELKVQLQELLDK 508

Query: 61  GFIRLSVSPWGAPVLFVKRKDGSMRLCHDYRELNKVTVKNRYPLPRINDLFDQLHGATVF 120
           GFIR SVSPWGAPVLFVK+KDGSMRLC DYRELNKVTVKNRYPLPRI+DLFDQL GATVF
Sbjct: 509 GFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVF 568

Query: 121 SRIDLRSGYHQLRIKDGDVPKTSFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLD 180
           S+IDL+SGYHQLRIKDGDVPKT+FRSRYGH+EFIVMSFGLTNAPAVFMDLMNRVFREFLD
Sbjct: 569 SKIDLQSGYHQLRIKDGDVPKTAFRSRYGHFEFIVMSFGLTNAPAVFMDLMNRVFREFLD 628

Query: 181 TFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLRQVPF 233
           TFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWL+QV F
Sbjct: 629 TFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSF 680

[Close]
BLAST of Cmc08g0225921 vs. ExPASy TrEMBL
Match: A0A5A7SQU8 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold134G00040 PE=4 SV=1)

HSP 1 Score: 448.0 bits (1151), Expect = 2.4e-122
Identity = 216/232 (93.10%), Postives = 226/232 (97.41%), Query Frame = 0 

Query: 1    MVRDYPDVFPEELSGLPPHREIKFAIELESGTVPISRAPYRMAPAELKELKVQLQELLDK 60
            +VRDYPDVFPEEL GLPPHRE++FAIELE GTVPISRAPYRMAPAELKELKVQLQELLDK
Sbjct: 911  VVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDK 970

Query: 61   GFIRLSVSPWGAPVLFVKRKDGSMRLCHDYRELNKVTVKNRYPLPRINDLFDQLHGATVF 120
            GFIR S+SPWGAPVLFVK+KDGSMRLC DYRELNKVTVKNRYPLPRI+DLFDQL GATVF
Sbjct: 971  GFIRPSMSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVF 1030

Query: 121  SRIDLRSGYHQLRIKDGDVPKTSFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLD 180
            S+IDLRSGYHQLRIKDGDVPKT+FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLD
Sbjct: 1031 SKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLD 1090

Query: 181  TFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLRQVPF 233
            TFVIVFIDDILIYSKTEAEHEEHLR+VLQTLRDNKLYAKFSKCEFWL+QV F
Sbjct: 1091 TFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKQVSF 1142

[Close]
BLAST of Cmc08g0225921 vs. ExPASy TrEMBL
Match: A0A5A7VIT9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G003090 PE=4 SV=1)

HSP 1 Score: 447.6 bits (1150), Expect = 3.2e-122
Identity = 217/232 (93.53%), Postives = 225/232 (96.98%), Query Frame = 0 

Query: 1   MVRDYPDVFPEELSGLPPHREIKFAIELESGTVPISRAPYRMAPAELKELKVQLQELLDK 60
           +VRDYPDVFPEEL GLPPHRE++FAIELE GTVPISRAPYRMAPAELKELKVQLQELLDK
Sbjct: 113 VVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDK 172

Query: 61  GFIRLSVSPWGAPVLFVKRKDGSMRLCHDYRELNKVTVKNRYPLPRINDLFDQLHGATVF 120
           GFIR SVSPWGAPVLFVK+KDGSMRLC DYRELNKVTVKNRYPLPRI+DLFDQL GATVF
Sbjct: 173 GFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVF 232

Query: 121 SRIDLRSGYHQLRIKDGDVPKTSFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLD 180
           S+IDLRSGYHQLRIKD DVPKT+FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLD
Sbjct: 233 SKIDLRSGYHQLRIKDEDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLD 292

Query: 181 TFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLRQVPF 233
           TFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWL+QV F
Sbjct: 293 TFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSF 344

The following BLAST results are available for this feature:
BLAST of Cmc08g0225921 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0047433.12.3e-12293.53ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0032356.13.0e-12293.10ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0043070.13.9e-12293.10reverse transcriptase [Cucumis melo var. makuwa][more]
KAA0031931.15.1e-12293.10pol protein [Cucumis melo var. makuwa][more]
KAA0036671.16.6e-12293.53gag protease polyprotein [Cucumis melo var. makuwa][more]
BLAST of Cmc08g0225921 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q993154.1e-4240.36Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20... [more]
Q7LHG54.1e-4240.36Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20... [more]
P0CT411.0e-4035.78Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24... [more]
P0CT341.0e-4035.78Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248... [more]
P0CT351.0e-4035.78Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248... [more]
BLAST of Cmc08g0225921 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TV571.1e-12293.53Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5A7SQP51.4e-12293.10Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5A7TIB41.9e-12293.10Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold15... [more]
A0A5A7SQU82.4e-12293.10Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13... [more]
A0A5A7VIT93.2e-12293.53Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21... [more]
BLAST of Cmc08g0225921 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.10.10.10HIV Type 1 Reverse Transcriptase, subunit A, domain 1coord: 22..162
e-value: 1.2E-86
score: 291.4
NoneNo IPR availablePANTHERPTHR24559TRANSPOSON TY3-I GAG-POL POLYPROTEINcoord: 34..232
NoneNo IPR availablePANTHERPTHR24559:SF324TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEINcoord: 34..232
NoneNo IPR availableCDDcd01647RT_LTRcoord: 61..232
e-value: 1.69935E-88
score: 257.139
IPR043128Reverse transcriptase/Diguanylate cyclase domainGENE3D3.30.70.270coord: 102..232
e-value: 1.2E-86
score: 291.4
IPR000477Reverse transcriptase domainPFAMPF00078RVT_1coord: 78..227
e-value: 8.5E-25
score: 87.6
IPR000477Reverse transcriptase domainPROSITEPS50878RT_POLcoord: 58..232
score: 8.547633
IPR043502DNA/RNA polymerase superfamilySUPERFAMILY56672DNA/RNA polymerasescoord: 2..232

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc08g0225921.1Cmc08g0225921.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0006508 proteolysis
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0006278 RNA-dependent DNA biosynthetic process
cellular_component GO:0016020 membrane
cellular_component GO:0043227 membrane-bounded organelle
molecular_function GO:0004190 aspartic-type endopeptidase activity
molecular_function GO:0003700 DNA-binding transcription factor activity
molecular_function GO:0003964 RNA-directed DNA polymerase activity
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0008270 zinc ion binding