Cmc08g0225821 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0225821
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Pol protein
Location	CMiso1.1chr08: 17145235 .. 17145846 (+)
RNA-Seq Expression	Cmc08g0225821
Synteny	Cmc08g0225821

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAGAGAGGTGGCGGAATTTGTTAGTAAATGCTTGGTGTGTCAGCAGGTTAAGGCACCAAGGCAGAAACCAGCGGGTTTATTACAACCCTTGAGCGTACCGGAATGGAAGTGGGAAAACGTGTCCATGGATTTCATTACAGGACTGCCAAGAACTCTGAGGGGTTTTACAGTGATTTGGGTTGCAGTTGACAGACTTACCAAATCAGCGCACTTCGTTCCTGGTAAATCCACCTACACCGCTAGTAAGTGGGCACAGCTGTACATGTCTGAGATAGTGAGACTACATGGAGTGCCAGTGTCATTTGTTTCTGATAGAAATGCCCGTTTCACTTCCAAATTCTGGAGGGGTTTGCAGACTGCTATGGGCACGAAGTTAGACTTTAGTACAGCTTTCCATCCACAGACTGACGGTCAGACTAAGCGTCTGAACCAAATTTTAGAGGATATGTTGCGAGCGTGTGCATTGGAATTTCCAGGTAGTTGGGACTCCCACTTGTATTTGATGGAATTAGATCACGTATGCAGACTGCACAGAGTAGGCAGAAGAGTTATGCTGATGTTAGACGGAAGGATCTTGAGTTTGATGTGGGGGACAAGGTGTTCTTGA

mRNA sequence

ATGAAGAGAGAGGTGGCGGAATTTGTTAGTAAATGCTTGGTGTGTCAGCAGGTTAAGGCACCAAGGCAGAAACCAGCGGGTTTATTACAACCCTTGAGCGTACCGGAATGGAAGTGGGAAAACGTGTCCATGGATTTCATTACAGGACTGCCAAGAACTCTGAGGGGTTTTACAGTGATTTGGGTTGCAGTTGACAGACTTACCAAATCAGCGCACTTCGTTCCTGGTAAATCCACCTACACCGCTAGTAAGTGGGCACAGCTGTACATGTCTGAGATAGTGAGACTACATGGAGTGCCAGTGTCATTTGTTTCTGATAGAAATGCCCGTTTCACTTCCAAATTCTGGAGGGGTTTGCAGACTGCTATGGGCACGAAGTTAGACTTTAGTACAGCTTTCCATCCACAGACTGACGGTCAGACTAAGCGTCTGAACCAAATTTTAGAGGATATGTTGCGAGCGTGTGCATTGGAATTTCCAGGTAGTTGGGACTCCCACTTGTATTTGATGGAATTAGATCACGTATGCAGACTGCACAGAGTAGGCAGAAGAGTTATGCTGATGTTAGACGGAAGGATCTTGAGTTTGATGTGGGGGACAAGGTGTTCTTGA

Coding sequence (CDS)

ATGAAGAGAGAGGTGGCGGAATTTGTTAGTAAATGCTTGGTGTGTCAGCAGGTTAAGGCACCAAGGCAGAAACCAGCGGGTTTATTACAACCCTTGAGCGTACCGGAATGGAAGTGGGAAAACGTGTCCATGGATTTCATTACAGGACTGCCAAGAACTCTGAGGGGTTTTACAGTGATTTGGGTTGCAGTTGACAGACTTACCAAATCAGCGCACTTCGTTCCTGGTAAATCCACCTACACCGCTAGTAAGTGGGCACAGCTGTACATGTCTGAGATAGTGAGACTACATGGAGTGCCAGTGTCATTTGTTTCTGATAGAAATGCCCGTTTCACTTCCAAATTCTGGAGGGGTTTGCAGACTGCTATGGGCACGAAGTTAGACTTTAGTACAGCTTTCCATCCACAGACTGACGGTCAGACTAAGCGTCTGAACCAAATTTTAGAGGATATGTTGCGAGCGTGTGCATTGGAATTTCCAGGTAGTTGGGACTCCCACTTGTATTTGATGGAATTAGATCACGTATGCAGACTGCACAGAGTAGGCAGAAGAGTTATGCTGATGTTAGACGGAAGGATCTTGAGTTTGATGTGGGGGACAAGGTGTTCTTGA

Protein sequence

MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVAVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSFVSDRNARFTSKFWRGLQTAMGTKLDFSTAFHPQTDGQTKRLNQILEDMLRACALEFPGSWDSHLYLMELDHVCRLHRVGRRVMLMLDGRILSLMWGTRCS

Homology

[Close]

BLAST of Cmc08g0225821 vs. NCBI nr
Match: AAO45752.1 (pol protein [Cucumis melo subsp. melo])

HSP 1 Score: 346.3 bits (887), Expect = 1.8e-91
Identity = 162/171 (94.74%), Postives = 169/171 (98.83%), Query Frame = 0


Query: 1   MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVI 60
           MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLS+PEWKWENVSMDFITGLPRTLRGFTVI
Sbjct: 534 MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVI 593

Query: 61  WVAVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSFVSDRNARFTSKFWRGLQ 120
           WV VDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVS VSDR+ARFTSKFW+GLQ
Sbjct: 594 WVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQ 653

Query: 121 TAMGTKLDFSTAFHPQTDGQTKRLNQILEDMLRACALEFPGSWDSHLYLME 172
           TAMGT+LDFSTAFHPQTDGQT+RLNQ+LEDMLRACALEFPGSWDSHL+LME
Sbjct: 654 TAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLME 704

[Close]

BLAST of Cmc08g0225821 vs. NCBI nr
Match: KAA0053631.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 346.3 bits (887), Expect = 1.8e-91
Identity = 162/171 (94.74%), Postives = 169/171 (98.83%), Query Frame = 0


Query: 1   MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVI 60
           MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLS+PEWKWENVSMDFITGLPRTLRGFTVI
Sbjct: 21  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVI 80

Query: 61  WVAVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSFVSDRNARFTSKFWRGLQ 120
           WV VDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVS VSDR+ARFTSKFW+GLQ
Sbjct: 81  WVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQ 140

Query: 121 TAMGTKLDFSTAFHPQTDGQTKRLNQILEDMLRACALEFPGSWDSHLYLME 172
           TAMGT+LDFSTAFHPQTDGQT+RLNQ+LEDMLRACALEFPGSWDSHL+LME
Sbjct: 141 TAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLME 191

[Close]

BLAST of Cmc08g0225821 vs. NCBI nr
Match: KAA0064005.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 346.3 bits (887), Expect = 1.8e-91
Identity = 162/171 (94.74%), Postives = 169/171 (98.83%), Query Frame = 0


Query: 1   MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVI 60
           MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLS+PEWKWENVSMDFITGLPRTLRGFTVI
Sbjct: 229 MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVI 288

Query: 61  WVAVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSFVSDRNARFTSKFWRGLQ 120
           WV VDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVS VSDR+ARFTSKFW+GLQ
Sbjct: 289 WVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQ 348

Query: 121 TAMGTKLDFSTAFHPQTDGQTKRLNQILEDMLRACALEFPGSWDSHLYLME 172
           TAMGT+LDFSTAFHPQTDGQT+RLNQ+LEDMLRACALEFPGSWDSHL+LME
Sbjct: 349 TAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLME 399

[Close]

BLAST of Cmc08g0225821 vs. NCBI nr
Match: KAA0066456.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 346.3 bits (887), Expect = 1.8e-91
Identity = 162/171 (94.74%), Postives = 169/171 (98.83%), Query Frame = 0


Query: 1    MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVI 60
            MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLS+PEWKWENVSMDFITGLPRTLRGFTVI
Sbjct: 1109 MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVI 1168

Query: 61   WVAVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSFVSDRNARFTSKFWRGLQ 120
            WV VDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVS VSDR+ARFTSKFW+GLQ
Sbjct: 1169 WVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQ 1228

Query: 121  TAMGTKLDFSTAFHPQTDGQTKRLNQILEDMLRACALEFPGSWDSHLYLME 172
            TAMGT+LDFSTAFHPQTDGQT+RLNQ+LEDMLRACALEFPGSWDSHL+LME
Sbjct: 1229 TAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLME 1279

[Close]

BLAST of Cmc08g0225821 vs. NCBI nr
Match: KAA0043401.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 346.3 bits (887), Expect = 1.8e-91
Identity = 162/171 (94.74%), Postives = 169/171 (98.83%), Query Frame = 0


Query: 1   MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVI 60
           MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLS+PEWKWENVSMDFITGLPRTLRGFTVI
Sbjct: 1   MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVI 60

Query: 61  WVAVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSFVSDRNARFTSKFWRGLQ 120
           WV VDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVS VSDR+ARFTSKFW+GLQ
Sbjct: 61  WVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQ 120

Query: 121 TAMGTKLDFSTAFHPQTDGQTKRLNQILEDMLRACALEFPGSWDSHLYLME 172
           TAMGT+LDFSTAFHPQTDGQT+RLNQ+LEDMLRACALEFPGSWDSHL+LME
Sbjct: 121 TAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLME 171

[Close]

BLAST of Cmc08g0225821 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 135.2 bits (339), Expect = 8.3e-31
Identity = 67/175 (38.29%), Postives = 103/175 (58.86%), Query Frame = 0


Query: 1    MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVI 60
            ++  + +++  C+ CQ +K+ R +  GLLQPL + E +W ++SMDF+TGLP T     +I
Sbjct: 1131 LQHSIIQYIRTCVQCQLIKSHRPRLHGLLQPLPIAEGRWLDISMDFVTGLPPTSNNLNMI 1190

Query: 61   WVAVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSFVSDRNARFTSKFWRGLQ 120
             V VDR +K AHF+  + T  A++   L    I   HG P +  SDR+ R T+  ++ L 
Sbjct: 1191 LVVVDRFSKRAHFIATRKTLDATQLIDLLFRYIFSYHGFPRTITSDRDVRMTADKYQELT 1250

Query: 121  TAMGTKLDFSTAFHPQTDGQTKRLNQILEDMLRACALEFPGSWDSHLYLMELDHV 176
              +G K   S+A HPQTDGQ++R  Q L  +LRA A     +W  H+YL +++ V
Sbjct: 1251 KRLGIKSTMSSANHPQTDGQSERTIQTLNRLLRAYASTNIQNW--HVYLPQIEFV 1303

[Close]

BLAST of Cmc08g0225821 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 133.7 bits (335), Expect = 2.4e-30
Identity = 66/175 (37.71%), Postives = 102/175 (58.29%), Query Frame = 0


Query: 1    MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVI 60
            ++  + +++  C+ CQ +K+ R +  GLLQPL + E +W ++SMDF+TGLP T     +I
Sbjct: 1157 LQHSIIQYIRTCVQCQLIKSHRPRLHGLLQPLPIAEGRWLDISMDFVTGLPPTSNNLNMI 1216

Query: 61   WVAVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSFVSDRNARFTSKFWRGLQ 120
             V VDR +K AHF+  + T  A++   L    I   HG P +  SDR+ R T+  ++ L 
Sbjct: 1217 LVVVDRFSKRAHFIATRKTLDATQLIDLLFRYIFSYHGFPRTITSDRDVRMTADKYQELT 1276

Query: 121  TAMGTKLDFSTAFHPQTDGQTKRLNQILEDMLRACALEFPGSWDSHLYLMELDHV 176
              +G K   S+A HPQTDGQ++R  Q L  +LRA       +W  H+YL +++ V
Sbjct: 1277 KRLGIKSTMSSANHPQTDGQSERTIQTLNRLLRAYVSTNIQNW--HVYLPQIEFV 1329

[Close]

BLAST of Cmc08g0225821 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.2e-29
Identity = 62/179 (34.64%), Postives = 100/179 (55.87%), Query Frame = 0


Query: 1    MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVI 60
            +++++ E+V  C  CQ  K+   KP G LQP+   E  WE++SMDFIT LP +  G+  +
Sbjct: 946  IRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPES-SGYNAL 1005

Query: 61   WVAVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSFVSDRNARFTSKFWRGLQ 120
            +V VDR +K A  VP   + TA + A+++   ++   G P   ++D +  FTS+ W+   
Sbjct: 1006 FVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFA 1065

Query: 121  TAMGTKLDFSTAFHPQTDGQTKRLNQILEDMLRACALEFPGSWDSHLYLMELDHVCRLH 180
                  + FS  + PQTDGQT+R NQ +E +LR      P +W  H+ L++  +   +H
Sbjct: 1066 HKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIH 1123

[Close]

BLAST of Cmc08g0225821 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.2e-29
Identity = 62/179 (34.64%), Postives = 100/179 (55.87%), Query Frame = 0


Query: 1    MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVI 60
            +++++ E+V  C  CQ  K+   KP G LQP+   E  WE++SMDFIT LP +  G+  +
Sbjct: 946  IRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPES-SGYNAL 1005

Query: 61   WVAVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSFVSDRNARFTSKFWRGLQ 120
            +V VDR +K A  VP   + TA + A+++   ++   G P   ++D +  FTS+ W+   
Sbjct: 1006 FVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFA 1065

Query: 121  TAMGTKLDFSTAFHPQTDGQTKRLNQILEDMLRACALEFPGSWDSHLYLMELDHVCRLH 180
                  + FS  + PQTDGQT+R NQ +E +LR      P +W  H+ L++  +   +H
Sbjct: 1066 HKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIH 1123

[Close]

BLAST of Cmc08g0225821 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.2e-29
Identity = 62/179 (34.64%), Postives = 100/179 (55.87%), Query Frame = 0


Query: 1    MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVI 60
            +++++ E+V  C  CQ  K+   KP G LQP+   E  WE++SMDFIT LP +  G+  +
Sbjct: 946  IRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPES-SGYNAL 1005

Query: 61   WVAVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSFVSDRNARFTSKFWRGLQ 120
            +V VDR +K A  VP   + TA + A+++   ++   G P   ++D +  FTS+ W+   
Sbjct: 1006 FVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFA 1065

Query: 121  TAMGTKLDFSTAFHPQTDGQTKRLNQILEDMLRACALEFPGSWDSHLYLMELDHVCRLH 180
                  + FS  + PQTDGQT+R NQ +E +LR      P +W  H+ L++  +   +H
Sbjct: 1066 HKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIH 1123

[Close]

BLAST of Cmc08g0225821 vs. ExPASy TrEMBL
Match: A0A5A7VDP3 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1536G00010 PE=4 SV=1)

HSP 1 Score: 346.3 bits (887), Expect = 8.8e-92
Identity = 162/171 (94.74%), Postives = 169/171 (98.83%), Query Frame = 0


Query: 1   MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVI 60
           MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLS+PEWKWENVSMDFITGLPRTLRGFTVI
Sbjct: 229 MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVI 288

Query: 61  WVAVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSFVSDRNARFTSKFWRGLQ 120
           WV VDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVS VSDR+ARFTSKFW+GLQ
Sbjct: 289 WVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQ 348

Query: 121 TAMGTKLDFSTAFHPQTDGQTKRLNQILEDMLRACALEFPGSWDSHLYLME 172
           TAMGT+LDFSTAFHPQTDGQT+RLNQ+LEDMLRACALEFPGSWDSHL+LME
Sbjct: 349 TAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLME 399

[Close]

BLAST of Cmc08g0225821 vs. ExPASy TrEMBL
Match: A0A5A7VJE2 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G005560 PE=4 SV=1)

HSP 1 Score: 346.3 bits (887), Expect = 8.8e-92
Identity = 162/171 (94.74%), Postives = 169/171 (98.83%), Query Frame = 0


Query: 1    MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVI 60
            MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLS+PEWKWENVSMDFITGLPRTLRGFTVI
Sbjct: 1109 MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVI 1168

Query: 61   WVAVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSFVSDRNARFTSKFWRGLQ 120
            WV VDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVS VSDR+ARFTSKFW+GLQ
Sbjct: 1169 WVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQ 1228

Query: 121  TAMGTKLDFSTAFHPQTDGQTKRLNQILEDMLRACALEFPGSWDSHLYLME 172
            TAMGT+LDFSTAFHPQTDGQT+RLNQ+LEDMLRACALEFPGSWDSHL+LME
Sbjct: 1229 TAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLME 1279

[Close]

BLAST of Cmc08g0225821 vs. ExPASy TrEMBL
Match: A0A5A7U7V9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G00950 PE=4 SV=1)

HSP 1 Score: 346.3 bits (887), Expect = 8.8e-92
Identity = 162/171 (94.74%), Postives = 169/171 (98.83%), Query Frame = 0


Query: 1    MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVI 60
            MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLS+PEWKWENVSMDFITGLPRTLRGFTVI
Sbjct: 1059 MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVI 1118

Query: 61   WVAVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSFVSDRNARFTSKFWRGLQ 120
            WV VDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVS VSDR+ARFTSKFW+GLQ
Sbjct: 1119 WVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQ 1178

Query: 121  TAMGTKLDFSTAFHPQTDGQTKRLNQILEDMLRACALEFPGSWDSHLYLME 172
            TAMGT+LDFSTAFHPQTDGQT+RLNQ+LEDMLRACALEFPGSWDSHL+LME
Sbjct: 1179 TAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLME 1229

[Close]

BLAST of Cmc08g0225821 vs. ExPASy TrEMBL
Match: A0A5A7UJG5 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold31080G00010 PE=4 SV=1)

HSP 1 Score: 346.3 bits (887), Expect = 8.8e-92
Identity = 162/171 (94.74%), Postives = 169/171 (98.83%), Query Frame = 0


Query: 1   MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVI 60
           MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLS+PEWKWENVSMDFITGLPRTLRGFTVI
Sbjct: 21  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVI 80

Query: 61  WVAVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSFVSDRNARFTSKFWRGLQ 120
           WV VDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVS VSDR+ARFTSKFW+GLQ
Sbjct: 81  WVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQ 140

Query: 121 TAMGTKLDFSTAFHPQTDGQTKRLNQILEDMLRACALEFPGSWDSHLYLME 172
           TAMGT+LDFSTAFHPQTDGQT+RLNQ+LEDMLRACALEFPGSWDSHL+LME
Sbjct: 141 TAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLME 191

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BLAST of Cmc08g0225821 vs. ExPASy TrEMBL
Match: A0A5A7SLT0 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold417G00090 PE=4 SV=1)

HSP 1 Score: 346.3 bits (887), Expect = 8.8e-92
Identity = 162/171 (94.74%), Postives = 169/171 (98.83%), Query Frame = 0


Query: 1   MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVI 60
           MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLS+PEWKWENVSMDFITGLPRTLRGFTVI
Sbjct: 98  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVI 157

Query: 61  WVAVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSFVSDRNARFTSKFWRGLQ 120
           WV VDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVS VSDR+ARFTSKFW+GLQ
Sbjct: 158 WVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQ 217

Query: 121 TAMGTKLDFSTAFHPQTDGQTKRLNQILEDMLRACALEFPGSWDSHLYLME 172
           TAMGT+LDFSTAFHPQTDGQT+RLNQ+LEDMLRACALEFPGSWDSHL+LME
Sbjct: 218 TAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLME 268

The following BLAST results are available for this feature:

BLAST of Cmc08g0225821 vs. NCBI nr


Match Name	E-value	Identity	Description
AAO45752.1	1.8e-91	94.74	pol protein [Cucumis melo subsp. melo]	[more]
KAA0053631.1	1.8e-91	94.74	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0064005.1	1.8e-91	94.74	pol protein [Cucumis melo var. makuwa]	[more]
KAA0066456.1	1.8e-91	94.74	pol protein [Cucumis melo var. makuwa]	[more]
KAA0043401.1	1.8e-91	94.74	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc08g0225821 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q99315	8.3e-31	38.29	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	2.4e-30	37.71	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q9UR07	1.2e-29	34.64	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT41	1.2e-29	34.64	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	1.2e-29	34.64	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Cmc08g0225821 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VDP3	8.8e-92	94.74	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1536G00010 P...	[more]
A0A5A7VJE2	8.8e-92	94.74	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21...	[more]
A0A5A7U7V9	8.8e-92	94.74	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55...	[more]
A0A5A7UJG5	8.8e-92	94.74	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7SLT0	8.8e-92	94.74	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold417G00090 PE...	[more]

BLAST of Cmc08g0225821 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 29..192 e-value: 4.2E-33 score: 116.3
None	No IPR available	PANTHER	PTHR45835	YALI0A06105P	coord: 5..174
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 31..153 score: 14.153082
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 32..179

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0225821.1	Cmc08g0225821.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0043227	membrane-bounded organelle
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding