Cmc08g0225741 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0225741
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr08: 17049384 .. 17050208 (+)
RNA-Seq Expression	Cmc08g0225741
Synteny	Cmc08g0225741

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACCTTGTGTTTACAAAAGGATCATCAAATCCAGTTTTGTATGTAGATGACATTCTACTGATTGGAAATGATATAGGTCATCTAACTGATATTAAGAAATGGCTAGCTACGCAATTCCAAATGAAAGATTTGGGAAATGCTCAATACGTTCTTGGTATCCAAATAGTTCGAAACCGAAAGAACAAAACACTAGTCATGTCTCAAACATCTTATATAGACAAAATGTTGGCAAGATATAAGATGCAGAATTCCAAGAAAGGTTTGTTGCCGTACAGATATGAAATTCATTTATCAAAAGAACAATGTCCAAAAACACCTCAAGAAGTTGAGCATATGACTAACATTCCCTATGCTTCTGCTGTTGGGAGCCTGACGTATGCAATGTTATGTATTAGACCTGACATTTGCTATTCAATAGGGATAGTTAGTAGATATCAGTCCAATCCTGGACGTGATCATTGGACAACTGTTAAGAATATTCTAAAATATCTTAGAAGAACAAAAGACTACAAGCTTGTGTATGGTTCTAAGGATCTGATCCTTACTGGATACACTAACTTTGATTTTCAATCTGATAAAGATGTTAGAAAGTCTACATCGGGATCAATTTTCACTCTGAATGGAGGAACAGTAGTATGGAGAAGCATAAAACAATCCTGTATTGATGACTTCACTATGGAAGCTGAATATTTAGCAGCCTGTGAAGCAGCAAAGGAAGCAGTATGGCTTAAAAAGTTCTTAACATATTTAGAAATTGTTCCAAATATGCATCTGTCAATCACCTTATACTGCGACAACAGTGGTGCAGTTGCAAATTCATGA

mRNA sequence

ATGAACCTTGTGTTTACAAAAGGATCATCAAATCCAGTTTTGTATGTAGATGACATTCTACTGATTGGAAATGATATAGGTCATCTAACTGATATTAAGAAATGGCTAGCTACGCAATTCCAAATGAAAGATTTGGGAAATGCTCAATACGTTCTTGGTATCCAAATAGTTCGAAACCGAAAGAACAAAACACTAGTCATGTCTCAAACATCTTATATAGACAAAATGTTGGCAAGATATAAGATGCAGAATTCCAAGAAAGGTTTGTTGCCGTACAGATATGAAATTCATTTATCAAAAGAACAATGTCCAAAAACACCTCAAGAAGTTGAGCATATGACTAACATTCCCTATGCTTCTGCTGTTGGGAGCCTGACGTATGCAATGTTATGTATTAGACCTGACATTTGCTATTCAATAGGGATAGTTAGTAGATATCAGTCCAATCCTGGACGTGATCATTGGACAACTGTTAAGAATATTCTAAAATATCTTAGAAGAACAAAAGACTACAAGCTTGTGTATGGTTCTAAGGATCTGATCCTTACTGGATACACTAACTTTGATTTTCAATCTGATAAAGATGTTAGAAAGTCTACATCGGGATCAATTTTCACTCTGAATGGAGGAACAGTAGTATGGAGAAGCATAAAACAATCCTGTATTGATGACTTCACTATGGAAGCTGAATATTTAGCAGCCTGTGAAGCAGCAAAGGAAGCAGTATGGCTTAAAAAGTTCTTAACATATTTAGAAATTGTTCCAAATATGCATCTGTCAATCACCTTATACTGCGACAACAGTGGTGCAGTTGCAAATTCATGA

Coding sequence (CDS)

ATGAACCTTGTGTTTACAAAAGGATCATCAAATCCAGTTTTGTATGTAGATGACATTCTACTGATTGGAAATGATATAGGTCATCTAACTGATATTAAGAAATGGCTAGCTACGCAATTCCAAATGAAAGATTTGGGAAATGCTCAATACGTTCTTGGTATCCAAATAGTTCGAAACCGAAAGAACAAAACACTAGTCATGTCTCAAACATCTTATATAGACAAAATGTTGGCAAGATATAAGATGCAGAATTCCAAGAAAGGTTTGTTGCCGTACAGATATGAAATTCATTTATCAAAAGAACAATGTCCAAAAACACCTCAAGAAGTTGAGCATATGACTAACATTCCCTATGCTTCTGCTGTTGGGAGCCTGACGTATGCAATGTTATGTATTAGACCTGACATTTGCTATTCAATAGGGATAGTTAGTAGATATCAGTCCAATCCTGGACGTGATCATTGGACAACTGTTAAGAATATTCTAAAATATCTTAGAAGAACAAAAGACTACAAGCTTGTGTATGGTTCTAAGGATCTGATCCTTACTGGATACACTAACTTTGATTTTCAATCTGATAAAGATGTTAGAAAGTCTACATCGGGATCAATTTTCACTCTGAATGGAGGAACAGTAGTATGGAGAAGCATAAAACAATCCTGTATTGATGACTTCACTATGGAAGCTGAATATTTAGCAGCCTGTGAAGCAGCAAAGGAAGCAGTATGGCTTAAAAAGTTCTTAACATATTTAGAAATTGTTCCAAATATGCATCTGTCAATCACCTTATACTGCGACAACAGTGGTGCAGTTGCAAATTCATGA

Protein sequence

MNLVFTKGSSNPVLYVDDILLIGNDIGHLTDIKKWLATQFQMKDLGNAQYVLGIQIVRNRKNKTLVMSQTSYIDKMLARYKMQNSKKGLLPYRYEIHLSKEQCPKTPQEVEHMTNIPYASAVGSLTYAMLCIRPDICYSIGIVSRYQSNPGRDHWTTVKNILKYLRRTKDYKLVYGSKDLILTGYTNFDFQSDKDVRKSTSGSIFTLNGGTVVWRSIKQSCIDDFTMEAEYLAACEAAKEAVWLKKFLTYLEIVPNMHLSITLYCDNSGAVANS

Homology

[Close]

BLAST of Cmc08g0225741 vs. NCBI nr
Match: KAA0067828.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 558.1 bits (1437), Expect = 4.1e-155
Identity = 274/274 (100.00%), Postives = 274/274 (100.00%), Query Frame = 0


Query: 1   MNLVFTKGSSNPVLYVDDILLIGNDIGHLTDIKKWLATQFQMKDLGNAQYVLGIQIVRNR 60
           MNLVFTKGSSNPVLYVDDILLIGNDIGHLTDIKKWLATQFQMKDLGNAQYVLGIQIVRNR
Sbjct: 3   MNLVFTKGSSNPVLYVDDILLIGNDIGHLTDIKKWLATQFQMKDLGNAQYVLGIQIVRNR 62

Query: 61  KNKTLVMSQTSYIDKMLARYKMQNSKKGLLPYRYEIHLSKEQCPKTPQEVEHMTNIPYAS 120
           KNKTLVMSQTSYIDKMLARYKMQNSKKGLLPYRYEIHLSKEQCPKTPQEVEHMTNIPYAS
Sbjct: 63  KNKTLVMSQTSYIDKMLARYKMQNSKKGLLPYRYEIHLSKEQCPKTPQEVEHMTNIPYAS 122

Query: 121 AVGSLTYAMLCIRPDICYSIGIVSRYQSNPGRDHWTTVKNILKYLRRTKDYKLVYGSKDL 180
           AVGSLTYAMLCIRPDICYSIGIVSRYQSNPGRDHWTTVKNILKYLRRTKDYKLVYGSKDL
Sbjct: 123 AVGSLTYAMLCIRPDICYSIGIVSRYQSNPGRDHWTTVKNILKYLRRTKDYKLVYGSKDL 182

Query: 181 ILTGYTNFDFQSDKDVRKSTSGSIFTLNGGTVVWRSIKQSCIDDFTMEAEYLAACEAAKE 240
           ILTGYTNFDFQSDKDVRKSTSGSIFTLNGGTVVWRSIKQSCIDDFTMEAEYLAACEAAKE
Sbjct: 183 ILTGYTNFDFQSDKDVRKSTSGSIFTLNGGTVVWRSIKQSCIDDFTMEAEYLAACEAAKE 242

Query: 241 AVWLKKFLTYLEIVPNMHLSITLYCDNSGAVANS 275
           AVWLKKFLTYLEIVPNMHLSITLYCDNSGAVANS
Sbjct: 243 AVWLKKFLTYLEIVPNMHLSITLYCDNSGAVANS 276

[Close]

BLAST of Cmc08g0225741 vs. NCBI nr
Match: TYK03644.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 468.4 bits (1204), Expect = 4.3e-128
Identity = 227/262 (86.64%), Postives = 239/262 (91.22%), Query Frame = 0


Query: 13  VLYVDDILLIGNDIGHLTDIKKWLATQFQMKDLGNAQYVLGIQIVRNRKNKTLVMSQTSY 72
           VLYVDDILLIGND+GHL DIKKWLA QFQMKDLGNAQYVLG+QIVRNRKNKTL MSQTSY
Sbjct: 423 VLYVDDILLIGNDVGHLADIKKWLAMQFQMKDLGNAQYVLGVQIVRNRKNKTLAMSQTSY 482

Query: 73  IDKMLARYKMQNSKKGLLPYRYEIHLSKEQCPKTPQEVEHMTNIPYASAVGSLTYAMLCI 132
           IDKML+RYKM NSKKGLLPYRY IHLSKEQCPKTPQEVE M+NIPYASAVGSL Y MLC 
Sbjct: 483 IDKMLSRYKMHNSKKGLLPYRYGIHLSKEQCPKTPQEVEDMSNIPYASAVGSLMYVMLCT 542

Query: 133 RPDICYSIGIVSRYQSNPGRDHWTTVKNILKYLRRTKDYKLVYGSKDLILTGYTNFDFQS 192
           RP+ICYS+GIVSR QS PGRDHWTTVKNILKYLRRTKDY LVYGSKDLILTGYT+F FQ+
Sbjct: 543 RPNICYSVGIVSRCQSKPGRDHWTTVKNILKYLRRTKDYMLVYGSKDLILTGYTDFYFQT 602

Query: 193 DKDVRKSTSGSIFTLNGGTVVWRSIKQSCIDDFTMEAEYLAACEAAKEAVWLKKFLTYLE 252
           DKD RKSTSG +FT+NGG VVWRSIKQSCI D TMEAEY+A CEAAKEAVWLKKFLT LE
Sbjct: 603 DKDARKSTSGLVFTMNGGAVVWRSIKQSCIADSTMEAEYVATCEAAKEAVWLKKFLTDLE 662

Query: 253 IVPNMHLSITLYCDNSGAVANS 275
           +VPNMHL  TLYCDNSGAV NS
Sbjct: 663 VVPNMHLPFTLYCDNSGAVVNS 684

[Close]

BLAST of Cmc08g0225741 vs. NCBI nr
Match: KAA0046768.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 463.8 bits (1192), Expect = 1.1e-126
Identity = 228/262 (87.02%), Postives = 240/262 (91.60%), Query Frame = 0


Query: 13  VLYVDDILLIGNDIGHLTDIKKWLATQFQMKDLGNAQYVLGIQIVRNRKNKTLVMSQTSY 72
           VLYVDDILLIGN+IGHLTDIK+WLATQFQMK LGNAQYVLGIQIVRN KNKTL MSQTSY
Sbjct: 273 VLYVDDILLIGNNIGHLTDIKEWLATQFQMKYLGNAQYVLGIQIVRNEKNKTLAMSQTSY 332

Query: 73  IDKMLARYKMQNSKKGLLPYRYEIHLSKEQCPKTPQEVEHMTNIPYASAVGSLTYAMLCI 132
           IDKML+RYKMQNSKKGLLPYRY I LSKEQCPKTPQEVE M+NIPYASA+GSL YAMLC 
Sbjct: 333 IDKMLSRYKMQNSKKGLLPYRYGIDLSKEQCPKTPQEVEDMSNIPYASAIGSLMYAMLCT 392

Query: 133 RPDICYSIGIVSRYQSNPGRDHWTTVKNILKYLRRTKDYKLVYGSKDLILTGYTNFDFQS 192
           RPDICYS+GIVSRYQSNP RDHWT VKNILKY RRTKDY LVYGSKDLILTGYT+ DFQ+
Sbjct: 393 RPDICYSVGIVSRYQSNPRRDHWTAVKNILKYHRRTKDYMLVYGSKDLILTGYTDSDFQT 452

Query: 193 DKDVRKSTSGSIFTLNGGTVVWRSIKQSCIDDFTMEAEYLAACEAAKEAVWLKKFLTYLE 252
           DKD RKST GS+FTLNG  VVWRSIKQSCI D TMEA Y+AACEA+KEAVWLKKFLT LE
Sbjct: 453 DKDARKSTLGSVFTLNGAAVVWRSIKQSCIADSTMEAGYVAACEASKEAVWLKKFLTDLE 512

Query: 253 IVPNMHLSITLYCDNSGAVANS 275
           +VPNMHL ITLYCDNSGAVANS
Sbjct: 513 VVPNMHLPITLYCDNSGAVANS 534

[Close]

BLAST of Cmc08g0225741 vs. NCBI nr
Match: ADJ18449.1 (gag/pol protein, partial [Bryonia dioica])

HSP 1 Score: 462.2 bits (1188), Expect = 3.1e-126
Identity = 221/262 (84.35%), Postives = 242/262 (92.37%), Query Frame = 0


Query: 13   VLYVDDILLIGNDIGHLTDIKKWLATQFQMKDLGNAQYVLGIQIVRNRKNKTLVMSQTSY 72
            +LYVDDILLIGND+ +LTD+KKWL TQFQMKDLG AQY+LGIQIVRNRKNKTL MSQ SY
Sbjct: 999  ILYVDDILLIGNDVEYLTDVKKWLNTQFQMKDLGEAQYILGIQIVRNRKNKTLAMSQASY 1058

Query: 73   IDKMLARYKMQNSKKGLLPYRYEIHLSKEQCPKTPQEVEHMTNIPYASAVGSLTYAMLCI 132
            IDK+L+RYKMQNSKKG LP+R+ IHLSKEQCPKTPQEVE M NIPY+SAVGSL YAMLC 
Sbjct: 1059 IDKVLSRYKMQNSKKGQLPFRHGIHLSKEQCPKTPQEVEDMRNIPYSSAVGSLMYAMLCT 1118

Query: 133  RPDICYSIGIVSRYQSNPGRDHWTTVKNILKYLRRTKDYKLVYGSKDLILTGYTNFDFQS 192
            RPDICYS+GIVSRYQSNPGRDHWT VKNILKYLRRT++Y LVYG+KDLILTGYT+ DFQS
Sbjct: 1119 RPDICYSVGIVSRYQSNPGRDHWTAVKNILKYLRRTRNYMLVYGAKDLILTGYTDSDFQS 1178

Query: 193  DKDVRKSTSGSIFTLNGGTVVWRSIKQSCIDDFTMEAEYLAACEAAKEAVWLKKFLTYLE 252
            DKD RKSTSGS+FTLNGG VVWRS+KQ+CI D TMEAEY+AACEAAKEAVWL+KFLT LE
Sbjct: 1179 DKDARKSTSGSVFTLNGGAVVWRSVKQTCIADSTMEAEYVAACEAAKEAVWLRKFLTDLE 1238

Query: 253  IVPNMHLSITLYCDNSGAVANS 275
            +VPNMHL ITLYCDNSGAVANS
Sbjct: 1239 VVPNMHLPITLYCDNSGAVANS 1260

[Close]

BLAST of Cmc08g0225741 vs. NCBI nr
Match: KAA0043372.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 461.5 bits (1186), Expect = 5.2e-126
Identity = 226/262 (86.26%), Postives = 239/262 (91.22%), Query Frame = 0


Query: 13  VLYVDDILLIGNDIGHLTDIKKWLATQFQMKDLGNAQYVLGIQIVRNRKNKTLVMSQTSY 72
           VLYVDDILLIGND+ HLTDIKKWLATQF+MKDLGNAQYV+GIQIV+NRKNKTLVMSQTSY
Sbjct: 289 VLYVDDILLIGNDVVHLTDIKKWLATQFRMKDLGNAQYVVGIQIVQNRKNKTLVMSQTSY 348

Query: 73  IDKMLARYKMQNSKKGLLPYRYEIHLSKEQCPKTPQEVEHMTNIPYASAVGSLTYAMLCI 132
           IDKML+RYKMQNSKK LLPYRY IHLSKEQ PKTPQEVE M+NIPYASAVGSL YAMLC 
Sbjct: 349 IDKMLSRYKMQNSKKDLLPYRYGIHLSKEQWPKTPQEVEDMSNIPYASAVGSLMYAMLCT 408

Query: 133 RPDICYSIGIVSRYQSNPGRDHWTTVKNILKYLRRTKDYKLVYGSKDLILTGYTNFDFQS 192
           R DICY +GIVSRYQSNPGRDHW  VKNILKYLRRTKDY LVYGSKDLILTGY + DFQS
Sbjct: 409 RRDICYLVGIVSRYQSNPGRDHWRVVKNILKYLRRTKDYMLVYGSKDLILTGYIDSDFQS 468

Query: 193 DKDVRKSTSGSIFTLNGGTVVWRSIKQSCIDDFTMEAEYLAACEAAKEAVWLKKFLTYLE 252
           DKD +KS SGS+FTLNGG VVWRSIKQSCI + TMEAEY+A CEAAKEA+WLKKFLTYLE
Sbjct: 469 DKDAKKSISGSVFTLNGGAVVWRSIKQSCIANSTMEAEYVATCEAAKEAIWLKKFLTYLE 528

Query: 253 IVPNMHLSITLYCDNSGAVANS 275
           I PNMHLSITLYCDNSG V NS
Sbjct: 529 IFPNMHLSITLYCDNSGIVVNS 550

[Close]

BLAST of Cmc08g0225741 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 2.2e-63
Identity = 120/259 (46.33%), Postives = 172/259 (66.41%), Query Frame = 0


Query: 13   VLYVDDILLIGNDIGHLTDIKKWLATQFQMKDLGNAQYVLGIQIVRNRKNKTLVMSQTSY 72
            +LYVDD+L++G D G +  +K  L+  F MKDLG AQ +LG++IVR R ++ L +SQ  Y
Sbjct: 1006 LLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRERTSRKLWLSQEKY 1065

Query: 73   IDKMLARYKMQNSKKGLLPYRYEIHLSKEQCPKTPQEVEHMTNIPYASAVGSLTYAMLCI 132
            I+++L R+ M+N+K    P    + LSK+ CP T +E  +M  +PY+SAVGSL YAM+C 
Sbjct: 1066 IERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKVPYSSAVGSLMYAMVCT 1125

Query: 133  RPDICYSIGIVSRYQSNPGRDHWTTVKNILKYLRRTKDYKLVYGSKDLILTGYTNFDFQS 192
            RPDI +++G+VSR+  NPG++HW  VK IL+YLR T    L +G  D IL GYT+ D   
Sbjct: 1126 RPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFGGSDPILKGYTDADMAG 1185

Query: 193  DKDVRKSTSGSIFTLNGGTVVWRSIKQSCIDDFTMEAEYLAACEAAKEAVWLKKFLTYLE 252
            D D RKS++G +FT +GG + W+S  Q C+   T EAEY+AA E  KE +WLK+FL  L 
Sbjct: 1186 DIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWLKRFLQELG 1245

Query: 253  IVPNMHLSITLYCDNSGAV 272
            +    ++   +YCD+  A+
Sbjct: 1246 LHQKEYV---VYCDSQSAI 1261

[Close]

BLAST of Cmc08g0225741 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 151.0 bits (380), Expect = 2.0e-35
Identity = 90/282 (31.91%), Postives = 154/282 (54.61%), Query Frame = 0


Query: 4    VFTKGSSNP----VLYVDDILLIGNDIGHLTDIKKWLATQFQMKDLGNAQYVLGIQIVRN 63
            +  KG+ N     +LYVDD+++   D+  + + K++L  +F+M DL   ++ +GI+I   
Sbjct: 1072 ILDKGNINENIYVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRI--E 1131

Query: 64   RKNKTLVMSQTSYIDKMLARYKMQNSKKGLLP----YRYEIHLSKEQCPKTPQEVEHMTN 123
             +   + +SQ++Y+ K+L+++ M+N      P      YE+  S E C           N
Sbjct: 1132 MQEDKIYLSQSAYVKKILSKFNMENCNAVSTPLPSKINYELLNSDEDC-----------N 1191

Query: 124  IPYASAVGSLTYAMLCIRPDICYSIGIVSRYQSNPGRDHWTTVKNILKYLRRTKDYKLVY 183
             P  S +G L Y MLC RPD+  ++ I+SRY S    + W  +K +L+YL+ T D KL++
Sbjct: 1192 TPCRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIF 1251

Query: 184  GSKDLI----LTGYTNFDFQSDKDVRKSTSGSIFTL-NGGTVVWRSIKQSCIDDFTMEAE 243
              K+L     + GY + D+   +  RKST+G +F + +   + W + +Q+ +   + EAE
Sbjct: 1252 -KKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAE 1311

Query: 244  YLAACEAAKEAVWLKKFLTYLEIVPNMHLSITLYCDNSGAVA 273
            Y+A  EA +EA+WLK  LT + I   +   I +Y DN G ++
Sbjct: 1312 YMALFEAVREALWLKFLLTSINI--KLENPIKIYEDNQGCIS 1337

[Close]

BLAST of Cmc08g0225741 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 2.9e-26
Identity = 58/133 (43.61%), Postives = 86/133 (64.66%), Query Frame = 0


Query: 113 MTNIPYASAVGSLTYAMLCIRPDICYSIGIVSRYQSNPGRDHWTTVKNILKYLRRTKDYK 172
           M N+PY SAVG++ Y M+  RPD+  ++G++S++ S+P   HW  +K +L+YL+ T+ Y 
Sbjct: 1   MKNVPYLSAVGAIMYLMVVTRPDLAAAVGVLSQFASDPCPTHWQALKRVLRYLQSTQTYG 60

Query: 173 LVYGSKDLI-LTGYTNFDFQSDKDVRKSTSGSIFTLNGGTVVWRSIKQSCIDDFTMEAEY 232
           L +       L GY++ D+  D + R+STSG +F LNGG V WRS KQ  +   + E EY
Sbjct: 61  LEFTRAGTAKLVGYSDADWAGDVESRRSTSGYLFKLNGGCVSWRSKKQRTVALSSTEDEY 120

Query: 233 LAACEAAKEAVWL 245
           +A  EA +EAVWL
Sbjct: 121 MALSEATQEAVWL 133

[Close]

BLAST of Cmc08g0225741 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 6.4e-26
Identity = 85/259 (32.82%), Postives = 123/259 (47.49%), Query Frame = 0


Query: 13   VLYVDDILLIGNDIGHLTDIKKWLATQFQMKDLGNAQYVLGIQIVRNRKNKTLVMSQTSY 72
            ++YVDDIL+ GND   L      L+ +F +K+  +  Y LGI+    R  + L +SQ  Y
Sbjct: 1131 LVYVDDILITGNDTVLLKHTLDALSQRFSVKEHEDLHYFLGIE--AKRVPQGLHLSQRRY 1190

Query: 73   IDKMLARYKMQNSKKGLLPYRYEIHLSKEQCPKTPQEVEHMTNIPYASAVGSLTYAMLCI 132
               +LAR  M  +K    P      L+     K P   E      Y   VGSL Y +   
Sbjct: 1191 TLDLLARTNMLTAKPVATPMATSPKLTLHSGTKLPDPTE------YRGIVGSLQY-LAFT 1250

Query: 133  RPDICYSIGIVSRYQSNPGRDHWTTVKNILKYLRRTKDYKL-VYGSKDLILTGYTNFDFQ 192
            RPD+ Y++  +S+Y   P  DHW  +K +L+YL  T D+ + +     L L  Y++ D+ 
Sbjct: 1251 RPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFLKKGNTLSLHAYSDADWA 1310

Query: 193  SDKDVRKSTSGSIFTLNGGTVVWRSIKQSCIDDFTMEAEYLAACEAAKEAVWLKKFLTYL 252
             D D   ST+G I  L    + W S KQ  +   + EAEY +    + E  W+   LT L
Sbjct: 1311 GDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSELQWICSLLTEL 1370

Query: 253  EIVPNMHLSITLYCDNSGA 271
             I   +     +YCDN GA
Sbjct: 1371 GI--QLSHPPVIYCDNVGA 1378

[Close]

BLAST of Cmc08g0225741 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.3e-23
Identity = 86/259 (33.20%), Postives = 122/259 (47.10%), Query Frame = 0


Query: 13   VLYVDDILLIGNDIGHLTDIKKWLATQFQMKDLGNAQYVLGIQIVRNRKNKTLVMSQTSY 72
            ++YVDDIL+ GND   L +    L+ +F +KD     Y LGI+    R    L +SQ  Y
Sbjct: 1148 LVYVDDILITGNDPTLLHNTLDNLSQRFSVKDHEELHYFLGIE--AKRVPTGLHLSQRRY 1207

Query: 73   IDKMLARYKMQNSKKGLLPYRYEIHLSKEQCPKTPQEVEHMTNIPYASAVGSLTYAMLCI 132
            I  +LAR  M  +K    P      LS     K     E      Y   VGSL Y +   
Sbjct: 1208 ILDLLARTNMITAKPVTTPMAPSPKLSLYSGTKLTDPTE------YRGIVGSLQY-LAFT 1267

Query: 133  RPDICYSIGIVSRYQSNPGRDHWTTVKNILKYLRRTKDYKL-VYGSKDLILTGYTNFDFQ 192
            RPDI Y++  +S++   P  +H   +K IL+YL  T ++ + +     L L  Y++ D+ 
Sbjct: 1268 RPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLKKGNTLSLHAYSDADWA 1327

Query: 193  SDKDVRKSTSGSIFTLNGGTVVWRSIKQSCIDDFTMEAEYLAACEAAKEAVWLKKFLTYL 252
             DKD   ST+G I  L    + W S KQ  +   + EAEY +    + E  W+   LT L
Sbjct: 1328 GDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSEMQWICSLLTEL 1387

Query: 253  EIVPNMHLSITLYCDNSGA 271
             I   +     +YCDN GA
Sbjct: 1388 GI--RLTRPPVIYCDNVGA 1395

[Close]

BLAST of Cmc08g0225741 vs. ExPASy TrEMBL
Match: A0A5A7VJ67 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2484G00350 PE=4 SV=1)

HSP 1 Score: 558.1 bits (1437), Expect = 2.0e-155
Identity = 274/274 (100.00%), Postives = 274/274 (100.00%), Query Frame = 0


Query: 1   MNLVFTKGSSNPVLYVDDILLIGNDIGHLTDIKKWLATQFQMKDLGNAQYVLGIQIVRNR 60
           MNLVFTKGSSNPVLYVDDILLIGNDIGHLTDIKKWLATQFQMKDLGNAQYVLGIQIVRNR
Sbjct: 3   MNLVFTKGSSNPVLYVDDILLIGNDIGHLTDIKKWLATQFQMKDLGNAQYVLGIQIVRNR 62

Query: 61  KNKTLVMSQTSYIDKMLARYKMQNSKKGLLPYRYEIHLSKEQCPKTPQEVEHMTNIPYAS 120
           KNKTLVMSQTSYIDKMLARYKMQNSKKGLLPYRYEIHLSKEQCPKTPQEVEHMTNIPYAS
Sbjct: 63  KNKTLVMSQTSYIDKMLARYKMQNSKKGLLPYRYEIHLSKEQCPKTPQEVEHMTNIPYAS 122

Query: 121 AVGSLTYAMLCIRPDICYSIGIVSRYQSNPGRDHWTTVKNILKYLRRTKDYKLVYGSKDL 180
           AVGSLTYAMLCIRPDICYSIGIVSRYQSNPGRDHWTTVKNILKYLRRTKDYKLVYGSKDL
Sbjct: 123 AVGSLTYAMLCIRPDICYSIGIVSRYQSNPGRDHWTTVKNILKYLRRTKDYKLVYGSKDL 182

Query: 181 ILTGYTNFDFQSDKDVRKSTSGSIFTLNGGTVVWRSIKQSCIDDFTMEAEYLAACEAAKE 240
           ILTGYTNFDFQSDKDVRKSTSGSIFTLNGGTVVWRSIKQSCIDDFTMEAEYLAACEAAKE
Sbjct: 183 ILTGYTNFDFQSDKDVRKSTSGSIFTLNGGTVVWRSIKQSCIDDFTMEAEYLAACEAAKE 242

Query: 241 AVWLKKFLTYLEIVPNMHLSITLYCDNSGAVANS 275
           AVWLKKFLTYLEIVPNMHLSITLYCDNSGAVANS
Sbjct: 243 AVWLKKFLTYLEIVPNMHLSITLYCDNSGAVANS 276

[Close]

BLAST of Cmc08g0225741 vs. ExPASy TrEMBL
Match: A0A5D3BX45 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1369G00740 PE=4 SV=1)

HSP 1 Score: 468.4 bits (1204), Expect = 2.1e-128
Identity = 227/262 (86.64%), Postives = 239/262 (91.22%), Query Frame = 0


Query: 13  VLYVDDILLIGNDIGHLTDIKKWLATQFQMKDLGNAQYVLGIQIVRNRKNKTLVMSQTSY 72
           VLYVDDILLIGND+GHL DIKKWLA QFQMKDLGNAQYVLG+QIVRNRKNKTL MSQTSY
Sbjct: 423 VLYVDDILLIGNDVGHLADIKKWLAMQFQMKDLGNAQYVLGVQIVRNRKNKTLAMSQTSY 482

Query: 73  IDKMLARYKMQNSKKGLLPYRYEIHLSKEQCPKTPQEVEHMTNIPYASAVGSLTYAMLCI 132
           IDKML+RYKM NSKKGLLPYRY IHLSKEQCPKTPQEVE M+NIPYASAVGSL Y MLC 
Sbjct: 483 IDKMLSRYKMHNSKKGLLPYRYGIHLSKEQCPKTPQEVEDMSNIPYASAVGSLMYVMLCT 542

Query: 133 RPDICYSIGIVSRYQSNPGRDHWTTVKNILKYLRRTKDYKLVYGSKDLILTGYTNFDFQS 192
           RP+ICYS+GIVSR QS PGRDHWTTVKNILKYLRRTKDY LVYGSKDLILTGYT+F FQ+
Sbjct: 543 RPNICYSVGIVSRCQSKPGRDHWTTVKNILKYLRRTKDYMLVYGSKDLILTGYTDFYFQT 602

Query: 193 DKDVRKSTSGSIFTLNGGTVVWRSIKQSCIDDFTMEAEYLAACEAAKEAVWLKKFLTYLE 252
           DKD RKSTSG +FT+NGG VVWRSIKQSCI D TMEAEY+A CEAAKEAVWLKKFLT LE
Sbjct: 603 DKDARKSTSGLVFTMNGGAVVWRSIKQSCIADSTMEAEYVATCEAAKEAVWLKKFLTDLE 662

Query: 253 IVPNMHLSITLYCDNSGAVANS 275
           +VPNMHL  TLYCDNSGAV NS
Sbjct: 663 VVPNMHLPFTLYCDNSGAVVNS 684

[Close]

BLAST of Cmc08g0225741 vs. ExPASy TrEMBL
Match: A0A5A7TV73 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold216G00520 PE=4 SV=1)

HSP 1 Score: 463.8 bits (1192), Expect = 5.1e-127
Identity = 228/262 (87.02%), Postives = 240/262 (91.60%), Query Frame = 0


Query: 13  VLYVDDILLIGNDIGHLTDIKKWLATQFQMKDLGNAQYVLGIQIVRNRKNKTLVMSQTSY 72
           VLYVDDILLIGN+IGHLTDIK+WLATQFQMK LGNAQYVLGIQIVRN KNKTL MSQTSY
Sbjct: 273 VLYVDDILLIGNNIGHLTDIKEWLATQFQMKYLGNAQYVLGIQIVRNEKNKTLAMSQTSY 332

Query: 73  IDKMLARYKMQNSKKGLLPYRYEIHLSKEQCPKTPQEVEHMTNIPYASAVGSLTYAMLCI 132
           IDKML+RYKMQNSKKGLLPYRY I LSKEQCPKTPQEVE M+NIPYASA+GSL YAMLC 
Sbjct: 333 IDKMLSRYKMQNSKKGLLPYRYGIDLSKEQCPKTPQEVEDMSNIPYASAIGSLMYAMLCT 392

Query: 133 RPDICYSIGIVSRYQSNPGRDHWTTVKNILKYLRRTKDYKLVYGSKDLILTGYTNFDFQS 192
           RPDICYS+GIVSRYQSNP RDHWT VKNILKY RRTKDY LVYGSKDLILTGYT+ DFQ+
Sbjct: 393 RPDICYSVGIVSRYQSNPRRDHWTAVKNILKYHRRTKDYMLVYGSKDLILTGYTDSDFQT 452

Query: 193 DKDVRKSTSGSIFTLNGGTVVWRSIKQSCIDDFTMEAEYLAACEAAKEAVWLKKFLTYLE 252
           DKD RKST GS+FTLNG  VVWRSIKQSCI D TMEA Y+AACEA+KEAVWLKKFLT LE
Sbjct: 453 DKDARKSTLGSVFTLNGAAVVWRSIKQSCIADSTMEAGYVAACEASKEAVWLKKFLTDLE 512

Query: 253 IVPNMHLSITLYCDNSGAVANS 275
           +VPNMHL ITLYCDNSGAVANS
Sbjct: 513 VVPNMHLPITLYCDNSGAVANS 534

[Close]

BLAST of Cmc08g0225741 vs. ExPASy TrEMBL
Match: E2GK51 (Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1)

HSP 1 Score: 462.2 bits (1188), Expect = 1.5e-126
Identity = 221/262 (84.35%), Postives = 242/262 (92.37%), Query Frame = 0


Query: 13   VLYVDDILLIGNDIGHLTDIKKWLATQFQMKDLGNAQYVLGIQIVRNRKNKTLVMSQTSY 72
            +LYVDDILLIGND+ +LTD+KKWL TQFQMKDLG AQY+LGIQIVRNRKNKTL MSQ SY
Sbjct: 999  ILYVDDILLIGNDVEYLTDVKKWLNTQFQMKDLGEAQYILGIQIVRNRKNKTLAMSQASY 1058

Query: 73   IDKMLARYKMQNSKKGLLPYRYEIHLSKEQCPKTPQEVEHMTNIPYASAVGSLTYAMLCI 132
            IDK+L+RYKMQNSKKG LP+R+ IHLSKEQCPKTPQEVE M NIPY+SAVGSL YAMLC 
Sbjct: 1059 IDKVLSRYKMQNSKKGQLPFRHGIHLSKEQCPKTPQEVEDMRNIPYSSAVGSLMYAMLCT 1118

Query: 133  RPDICYSIGIVSRYQSNPGRDHWTTVKNILKYLRRTKDYKLVYGSKDLILTGYTNFDFQS 192
            RPDICYS+GIVSRYQSNPGRDHWT VKNILKYLRRT++Y LVYG+KDLILTGYT+ DFQS
Sbjct: 1119 RPDICYSVGIVSRYQSNPGRDHWTAVKNILKYLRRTRNYMLVYGAKDLILTGYTDSDFQS 1178

Query: 193  DKDVRKSTSGSIFTLNGGTVVWRSIKQSCIDDFTMEAEYLAACEAAKEAVWLKKFLTYLE 252
            DKD RKSTSGS+FTLNGG VVWRS+KQ+CI D TMEAEY+AACEAAKEAVWL+KFLT LE
Sbjct: 1179 DKDARKSTSGSVFTLNGGAVVWRSVKQTCIADSTMEAEYVAACEAAKEAVWLRKFLTDLE 1238

Query: 253  IVPNMHLSITLYCDNSGAVANS 275
            +VPNMHL ITLYCDNSGAVANS
Sbjct: 1239 VVPNMHLPITLYCDNSGAVANS 1260

[Close]

BLAST of Cmc08g0225741 vs. ExPASy TrEMBL
Match: A0A5A7TJA8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold588G00330 PE=4 SV=1)

HSP 1 Score: 461.5 bits (1186), Expect = 2.5e-126
Identity = 226/262 (86.26%), Postives = 239/262 (91.22%), Query Frame = 0


Query: 13  VLYVDDILLIGNDIGHLTDIKKWLATQFQMKDLGNAQYVLGIQIVRNRKNKTLVMSQTSY 72
           VLYVDDILLIGND+ HLTDIKKWLATQF+MKDLGNAQYV+GIQIV+NRKNKTLVMSQTSY
Sbjct: 289 VLYVDDILLIGNDVVHLTDIKKWLATQFRMKDLGNAQYVVGIQIVQNRKNKTLVMSQTSY 348

Query: 73  IDKMLARYKMQNSKKGLLPYRYEIHLSKEQCPKTPQEVEHMTNIPYASAVGSLTYAMLCI 132
           IDKML+RYKMQNSKK LLPYRY IHLSKEQ PKTPQEVE M+NIPYASAVGSL YAMLC 
Sbjct: 349 IDKMLSRYKMQNSKKDLLPYRYGIHLSKEQWPKTPQEVEDMSNIPYASAVGSLMYAMLCT 408

Query: 133 RPDICYSIGIVSRYQSNPGRDHWTTVKNILKYLRRTKDYKLVYGSKDLILTGYTNFDFQS 192
           R DICY +GIVSRYQSNPGRDHW  VKNILKYLRRTKDY LVYGSKDLILTGY + DFQS
Sbjct: 409 RRDICYLVGIVSRYQSNPGRDHWRVVKNILKYLRRTKDYMLVYGSKDLILTGYIDSDFQS 468

Query: 193 DKDVRKSTSGSIFTLNGGTVVWRSIKQSCIDDFTMEAEYLAACEAAKEAVWLKKFLTYLE 252
           DKD +KS SGS+FTLNGG VVWRSIKQSCI + TMEAEY+A CEAAKEA+WLKKFLTYLE
Sbjct: 469 DKDAKKSISGSVFTLNGGAVVWRSIKQSCIANSTMEAEYVATCEAAKEAIWLKKFLTYLE 528

Query: 253 IVPNMHLSITLYCDNSGAVANS 275
           I PNMHLSITLYCDNSG V NS
Sbjct: 529 IFPNMHLSITLYCDNSGIVVNS 550

[Close]

BLAST of Cmc08g0225741 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 106.3 bits (264), Expect = 4.0e-23
Identity = 72/260 (27.69%), Postives = 126/260 (48.46%), Query Frame = 0


Query: 13  VLYVDDILLIGNDIGHLTDIKKWLATQFQMKDLGNAQYVLGIQIVRNRKNKTLVMSQTSY 72
           ++YVDDI++  N+   + ++K  L + F+++DLG  +Y LG++I R+     + + Q  Y
Sbjct: 281 LVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIARSAAG--INICQRKY 340

Query: 73  IDKMLARYKMQNSKKGLLPYRYEIHLSKEQCPKTPQEVEHMTNIPYASAVGSLTYAMLCI 132
              +L    +   K   +P    +  S           + +    Y   +G L Y  +  
Sbjct: 341 ALDLLDETGLLGCKPSSVPMDPSVTFSAH------SGGDFVDAKAYRRLIGRLMYLQI-T 400

Query: 133 RPDICYSIGIVSRYQSNPGRDHWTTVKNILKYLRRTKDYKLVYGSK-DLILTGYTNFDFQ 192
           R DI +++  +S++   P   H   V  IL Y++ T    L Y S+ ++ L  +++  FQ
Sbjct: 401 RLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQVFSDASFQ 460

Query: 193 SDKDVRKSTSGSIFTLNGGTVVWRSIKQSCIDDFTMEAEYLAACEAAKEAVWLKKFLTYL 252
           S KD R+ST+G    L    + W+S KQ  +   + EAEY A   A  E +WL +F   L
Sbjct: 461 SCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWLAQFFREL 520

Query: 253 EIVPNMHLSITLYCDNSGAV 272
           ++   +     L+CDN+ A+
Sbjct: 521 QL--PLSKPTLLFCDNTAAI 529

The following BLAST results are available for this feature:

BLAST of Cmc08g0225741 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0067828.1	4.1e-155	100.00	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK03644.1	4.3e-128	86.64	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0046768.1	1.1e-126	87.02	gag/pol protein [Cucumis melo var. makuwa]	[more]
ADJ18449.1	3.1e-126	84.35	gag/pol protein, partial [Bryonia dioica]	[more]
KAA0043372.1	5.2e-126	86.26	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc08g0225741 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	2.2e-63	46.33	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	2.0e-35	31.91	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P0CV72	2.9e-26	43.61	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]
Q9ZT94	6.4e-26	32.82	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	1.3e-23	33.20	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]

BLAST of Cmc08g0225741 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VJ67	2.0e-155	100.00	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2484G003...	[more]
A0A5D3BX45	2.1e-128	86.64	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1369G007...	[more]
A0A5A7TV73	5.1e-127	87.02	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold216G0052...	[more]
E2GK51	1.5e-126	84.35	Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1	[more]
A0A5A7TJA8	2.5e-126	86.26	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold588G0033...	[more]

BLAST of Cmc08g0225741 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	4.0e-23	27.69	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 14..91 e-value: 4.7E-14 score: 52.6
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 13..179
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 183..274 e-value: 6.07302E-34 score: 118.34

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0225741.1	Cmc08g0225741.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding