Cmc08g0225361 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0225361
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag-pol polyprotein
Location	CMiso1.1chr08: 16314196 .. 16314585 (+)
RNA-Seq Expression	Cmc08g0225361
Synteny	Cmc08g0225361

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGTAAAGAGTGCTTTCTTAAATGGATATTTGAATGAAGAGGTTTATGTTGCTCAACCAAAAGGTTTTGTTGATTCCGAGCACCCAAAGCATGTGTATAAGCTCAACAAAGCTCTATATGGGCTAAAGCAAGCTCCGAGAGCTTGGTATGAACGGCTAACTATTTACTTAAGAGGTAAAGGATATTCCAGAGGAGAAATTGACAAGACCTTGTTTATACACAGGGAATCTAATCAACTTTTGGTTGCTCAAATTTATGTTGATGACATCATTTTTGGAGGTTTTCCTCAAGATTTTGTCCATAATTTCATTAACATCATGCAGTCAGAATTCGAAATGAGCATGGTTGGAGAACTTTCGTGCTTTTTGGGTCTTCAAATCAAGTAA

mRNA sequence

ATGGATGTAAAGAGTGCTTTCTTAAATGGATATTTGAATGAAGAGGTTTATGTTGCTCAACCAAAAGGTTTTGTTGATTCCGAGCACCCAAAGCATGTGTATAAGCTCAACAAAGCTCTATATGGGCTAAAGCAAGCTCCGAGAGCTTGGTATGAACGGCTAACTATTTACTTAAGAGGTAAAGGATATTCCAGAGGAGAAATTGACAAGACCTTGTTTATACACAGGGAATCTAATCAACTTTTGGTTGCTCAAATTTATGTTGATGACATCATTTTTGGAGGTTTTCCTCAAGATTTTGTCCATAATTTCATTAACATCATGCAGTCAGAATTCGAAATGAGCATGGTTGGAGAACTTTCGTGCTTTTTGGGTCTTCAAATCAAGTAA

Coding sequence (CDS)

ATGGATGTAAAGAGTGCTTTCTTAAATGGATATTTGAATGAAGAGGTTTATGTTGCTCAACCAAAAGGTTTTGTTGATTCCGAGCACCCAAAGCATGTGTATAAGCTCAACAAAGCTCTATATGGGCTAAAGCAAGCTCCGAGAGCTTGGTATGAACGGCTAACTATTTACTTAAGAGGTAAAGGATATTCCAGAGGAGAAATTGACAAGACCTTGTTTATACACAGGGAATCTAATCAACTTTTGGTTGCTCAAATTTATGTTGATGACATCATTTTTGGAGGTTTTCCTCAAGATTTTGTCCATAATTTCATTAACATCATGCAGTCAGAATTCGAAATGAGCATGGTTGGAGAACTTTCGTGCTTTTTGGGTCTTCAAATCAAGTAA

Protein sequence

MDVKSAFLNGYLNEEVYVAQPKGFVDSEHPKHVYKLNKALYGLKQAPRAWYERLTIYLRGKGYSRGEIDKTLFIHRESNQLLVAQIYVDDIIFGGFPQDFVHNFINIMQSEFEMSMVGELSCFLGLQIK

Homology

[Close]

BLAST of Cmc08g0225361 vs. NCBI nr
Match: KAA0056459.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa] >TYK29068.1 putative gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 253.4 bits (646), Expect = 1.0e-63
Identity = 121/129 (93.80%), Postives = 125/129 (96.90%), Query Frame = 0


Query: 1   MDVKSAFLNGYLNEEVYVAQPKGFVDSEHPKHVYKLNKALYGLKQAPRAWYERLTIYLRG 60
           MDVKSAFLN YLNEEVYVAQPKGFVDSEHP+HVYKLNKALYGLKQAPRAWYERLT+YLRG
Sbjct: 1   MDVKSAFLNEYLNEEVYVAQPKGFVDSEHPRHVYKLNKALYGLKQAPRAWYERLTVYLRG 60

Query: 61  KGYSRGEIDKTLFIHRESNQLLVAQIYVDDIIFGGFPQDFVHNFINIMQSEFEMSMVGEL 120
           KGYSRGEIDKTLFIHR+S+QLLV QIYVDDIIFGGFPQD VHNFINIMQ EFEMSMVGEL
Sbjct: 61  KGYSRGEIDKTLFIHRKSDQLLVTQIYVDDIIFGGFPQDLVHNFINIMQPEFEMSMVGEL 120

Query: 121 SCFLGLQIK 130
           SCFLGLQIK
Sbjct: 121 SCFLGLQIK 129

[Close]

BLAST of Cmc08g0225361 vs. NCBI nr
Match: TYK23188.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 250.8 bits (639), Expect = 6.6e-63
Identity = 120/129 (93.02%), Postives = 124/129 (96.12%), Query Frame = 0


Query: 1   MDVKSAFLNGYLNEEVYVAQPKGFVDSEHPKHVYKLNKALYGLKQAPRAWYERLTIYLRG 60
           MDVKSAFLNGYLNEEVYVAQPK FVDSEHPKHVYKLNKALYGLKQAPR WYERLT+YLRG
Sbjct: 1   MDVKSAFLNGYLNEEVYVAQPKDFVDSEHPKHVYKLNKALYGLKQAPRVWYERLTVYLRG 60

Query: 61  KGYSRGEIDKTLFIHRESNQLLVAQIYVDDIIFGGFPQDFVHNFINIMQSEFEMSMVGEL 120
           KGYSRGEIDKTLFIHR+S+QLLVAQIYVDDIIFGGFP D V+NFINIMQSEFEMSMVGEL
Sbjct: 61  KGYSRGEIDKTLFIHRKSDQLLVAQIYVDDIIFGGFPHDLVNNFINIMQSEFEMSMVGEL 120

Query: 121 SCFLGLQIK 130
           SCFLG QIK
Sbjct: 121 SCFLGFQIK 129

[Close]

BLAST of Cmc08g0225361 vs. NCBI nr
Match: KAA0035966.1 (F5J5.1 [Cucumis melo var. makuwa])

HSP 1 Score: 250.4 bits (638), Expect = 8.6e-63
Identity = 120/129 (93.02%), Postives = 125/129 (96.90%), Query Frame = 0


Query: 1    MDVKSAFLNGYLNEEVYVAQPKGFVDSEHPKHVYKLNKALYGLKQAPRAWYERLTIYLRG 60
            MDVKSAFLNGYLN EVYVAQPKGFVD EHPKHVYKLNKALYGLKQAPRAWY RLT+YLRG
Sbjct: 893  MDVKSAFLNGYLNGEVYVAQPKGFVDFEHPKHVYKLNKALYGLKQAPRAWYNRLTVYLRG 952

Query: 61   KGYSRGEIDKTLFIHRESNQLLVAQIYVDDIIFGGFPQDFVHNFINIMQSEFEMSMVGEL 120
            +GYSRGEIDKTLFIHR+S+QLLVAQIYVDDIIFGGFPQD V+NFINIMQSEFEMSMVGEL
Sbjct: 953  RGYSRGEIDKTLFIHRKSDQLLVAQIYVDDIIFGGFPQDLVNNFINIMQSEFEMSMVGEL 1012

Query: 121  SCFLGLQIK 130
            SCFLGLQIK
Sbjct: 1013 SCFLGLQIK 1021

[Close]

BLAST of Cmc08g0225361 vs. NCBI nr
Match: TYK30437.1 (F5J5.1 [Cucumis melo var. makuwa])

HSP 1 Score: 250.4 bits (638), Expect = 8.6e-63
Identity = 120/129 (93.02%), Postives = 125/129 (96.90%), Query Frame = 0


Query: 1    MDVKSAFLNGYLNEEVYVAQPKGFVDSEHPKHVYKLNKALYGLKQAPRAWYERLTIYLRG 60
            MDVKSAFLNGYLN EVYVAQPKGFVD EHPKHVYKLNKALYGLKQAPRAWY RLT+YLRG
Sbjct: 893  MDVKSAFLNGYLNGEVYVAQPKGFVDFEHPKHVYKLNKALYGLKQAPRAWYNRLTVYLRG 952

Query: 61   KGYSRGEIDKTLFIHRESNQLLVAQIYVDDIIFGGFPQDFVHNFINIMQSEFEMSMVGEL 120
            +GYSRGEIDKTLFIHR+S+QLLVAQIYVDDIIFGGFPQD V+NFINIMQSEFEMSMVGEL
Sbjct: 953  RGYSRGEIDKTLFIHRKSDQLLVAQIYVDDIIFGGFPQDLVNNFINIMQSEFEMSMVGEL 1012

Query: 121  SCFLGLQIK 130
            SCFLGLQIK
Sbjct: 1013 SCFLGLQIK 1021

[Close]

BLAST of Cmc08g0225361 vs. NCBI nr
Match: KAA0033021.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 249.6 bits (636), Expect = 1.5e-62
Identity = 119/129 (92.25%), Postives = 126/129 (97.67%), Query Frame = 0


Query: 1   MDVKSAFLNGYLNEEVYVAQPKGFVDSEHPKHVYKLNKALYGLKQAPRAWYERLTIYLRG 60
           MDVKSAFLNGYLNEEVYVAQPKGFVDSEHPKHVYKLNKALYGLKQAPRAWY+RLT+YLRG
Sbjct: 163 MDVKSAFLNGYLNEEVYVAQPKGFVDSEHPKHVYKLNKALYGLKQAPRAWYDRLTVYLRG 222

Query: 61  KGYSRGEIDKTLFIHRESNQLLVAQIYVDDIIFGGFPQDFVHNFINIMQSEFEMSMVGEL 120
           KGYS+GEIDKTLFIHR+S+QLLVAQIYVDDIIFG FPQD ++NFINIMQSE EMSMVGEL
Sbjct: 223 KGYSKGEIDKTLFIHRKSDQLLVAQIYVDDIIFGEFPQDLLNNFINIMQSEIEMSMVGEL 282

Query: 121 SCFLGLQIK 130
           SCFLGLQIK
Sbjct: 283 SCFLGLQIK 291

[Close]

BLAST of Cmc08g0225361 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.6e-24
Identity = 54/129 (41.86%), Postives = 78/129 (60.47%), Query Frame = 0


Query: 1    MDVKSAFLNGYLNEEVYVAQPKGFVDSEHPKHVYKLNKALYGLKQAPRAWYERLTIYLRG 60
            +DV +AFL G L ++VY++QP GF+D + P +V KL KALYGLKQAPRAWY  L  YL  
Sbjct: 1064 LDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRKALYGLKQAPRAWYVELRNYLLT 1123

Query: 61   KGYSRGEIDKTLFIHRESNQLLVAQIYVDDIIFGGFPQDFVHNFINIMQSEFEMSMVGEL 120
             G+     D +LF+ +    ++   +YVDDI+  G     +HN ++ +   F +    EL
Sbjct: 1124 IGFVNSVSDTSLFVLQRGKSIVYMLVYVDDILITGNDPTLLHNTLDNLSQRFSVKDHEEL 1183

Query: 121  SCFLGLQIK 130
              FLG++ K
Sbjct: 1184 HYFLGIEAK 1192

[Close]

BLAST of Cmc08g0225361 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 9.0e-23
Identity = 51/129 (39.53%), Postives = 77/129 (59.69%), Query Frame = 0


Query: 1    MDVKSAFLNGYLNEEVYVAQPKGFVDSEHPKHVYKLNKALYGLKQAPRAWYERLTIYLRG 60
            +DV +AFL G L +EVY++QP GFVD + P +V +L KA+YGLKQAPRAWY  L  YL  
Sbjct: 1047 LDVNNAFLQGTLTDEVYMSQPPGFVDKDRPDYVCRLRKAIYGLKQAPRAWYVELRTYLLT 1106

Query: 61   KGYSRGEIDKTLFIHRESNQLLVAQIYVDDIIFGGFPQDFVHNFINIMQSEFEMSMVGEL 120
             G+     D +LF+ +    ++   +YVDDI+  G     + + ++ +   F +    +L
Sbjct: 1107 VGFVNSISDTSLFVLQRGRSIIYMLVYVDDILITGNDTVLLKHTLDALSQRFSVKEHEDL 1166

Query: 121  SCFLGLQIK 130
              FLG++ K
Sbjct: 1167 HYFLGIEAK 1175

[Close]

BLAST of Cmc08g0225361 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.8e-18
Identity = 47/129 (36.43%), Postives = 75/129 (58.14%), Query Frame = 0


Query: 1    MDVKSAFLNGYLNEEVYVAQPKGFVDSEHPKHVYKLNKALYGLKQAPRAWYERLTIYLRG 60
            +DVK+AFL+G L EE+Y+ QP+GF  +     V KLNK+LYGLKQAPR WY +   +++ 
Sbjct: 921  LDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKS 980

Query: 61   KGYSRGEIDKTLFIHRES-NQLLVAQIYVDDIIFGGFPQDFVHNFINIMQSEFEMSMVGE 120
            + Y +   D  ++  R S N  ++  +YVDD++  G  +  +      +   F+M  +G 
Sbjct: 981  QTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGP 1040

Query: 121  LSCFLGLQI 129
                LG++I
Sbjct: 1041 AQQILGMKI 1049

[Close]

BLAST of Cmc08g0225361 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 89.7 bits (221), Expect = 2.5e-17
Identity = 47/131 (35.88%), Postives = 78/131 (59.54%), Query Frame = 0


Query: 1    MDVKSAFLNGYLNEEVYVAQPKGFVDSEHPKHVYKLNKALYGLKQAPRAWYERLTIYLRG 60
            MDVK+AFLNG L EE+Y+  P+G   S +  +V KLNKA+YGLKQA R W+E     L+ 
Sbjct: 1001 MDVKTAFLNGTLKEEIYMRLPQGI--SCNSDNVCKLNKAIYGLKQAARCWFEVFEQALKE 1060

Query: 61   KGYSRGEIDKTLFIHRES--NQLLVAQIYVDDIIFGGFPQDFVHNFINIMQSEFEMSMVG 120
              +    +D+ ++I  +   N+ +   +YVDD++        ++NF   +  +F M+ + 
Sbjct: 1061 CEFVNSSVDRCIYILDKGNINENIYVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLN 1120

Query: 121  ELSCFLGLQIK 130
            E+  F+G++I+
Sbjct: 1121 EIKHFIGIRIE 1129

[Close]

BLAST of Cmc08g0225361 vs. ExPASy Swiss-Prot
Match: P25600 (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5A PE=5 SV=2)

HSP 1 Score: 85.9 bits (211), Expect = 3.7e-16
Identity = 44/128 (34.38%), Postives = 69/128 (53.91%), Query Frame = 0


Query: 1   MDVKSAFLNGYLNEEVYVAQPKGFVDSEHPKHVYKLNKALYGLKQAPRAWYERLTIYLRG 60
           MDV +AFLN  ++E +YV QP GFV+  +P +V++L   +YGLKQAP  W E +   L+ 
Sbjct: 1   MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKK 60

Query: 61  KGYSRGEIDKTLFIHRESNQLLVAQIYVDDIIFGGFPQDFVHNFINIMQSEFEMSMVGEL 120
            G+ R E +  L+    S+  +   +YVDD++               +   + M  +G++
Sbjct: 61  IGFCRHEGEHGLYFRSTSDGPIYIAVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGKV 120

Query: 121 SCFLGLQI 129
             FLGL I
Sbjct: 121 DKFLGLNI 128

[Close]

BLAST of Cmc08g0225361 vs. ExPASy TrEMBL
Match: A0A5D3E026 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G001880 PE=4 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 4.9e-64
Identity = 121/129 (93.80%), Postives = 125/129 (96.90%), Query Frame = 0


Query: 1   MDVKSAFLNGYLNEEVYVAQPKGFVDSEHPKHVYKLNKALYGLKQAPRAWYERLTIYLRG 60
           MDVKSAFLN YLNEEVYVAQPKGFVDSEHP+HVYKLNKALYGLKQAPRAWYERLT+YLRG
Sbjct: 1   MDVKSAFLNEYLNEEVYVAQPKGFVDSEHPRHVYKLNKALYGLKQAPRAWYERLTVYLRG 60

Query: 61  KGYSRGEIDKTLFIHRESNQLLVAQIYVDDIIFGGFPQDFVHNFINIMQSEFEMSMVGEL 120
           KGYSRGEIDKTLFIHR+S+QLLV QIYVDDIIFGGFPQD VHNFINIMQ EFEMSMVGEL
Sbjct: 61  KGYSRGEIDKTLFIHRKSDQLLVTQIYVDDIIFGGFPQDLVHNFINIMQPEFEMSMVGEL 120

Query: 121 SCFLGLQIK 130
           SCFLGLQIK
Sbjct: 121 SCFLGLQIK 129

[Close]

BLAST of Cmc08g0225361 vs. ExPASy TrEMBL
Match: A0A5D3DI97 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G002180 PE=4 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 3.2e-63
Identity = 120/129 (93.02%), Postives = 124/129 (96.12%), Query Frame = 0


Query: 1   MDVKSAFLNGYLNEEVYVAQPKGFVDSEHPKHVYKLNKALYGLKQAPRAWYERLTIYLRG 60
           MDVKSAFLNGYLNEEVYVAQPK FVDSEHPKHVYKLNKALYGLKQAPR WYERLT+YLRG
Sbjct: 1   MDVKSAFLNGYLNEEVYVAQPKDFVDSEHPKHVYKLNKALYGLKQAPRVWYERLTVYLRG 60

Query: 61  KGYSRGEIDKTLFIHRESNQLLVAQIYVDDIIFGGFPQDFVHNFINIMQSEFEMSMVGEL 120
           KGYSRGEIDKTLFIHR+S+QLLVAQIYVDDIIFGGFP D V+NFINIMQSEFEMSMVGEL
Sbjct: 61  KGYSRGEIDKTLFIHRKSDQLLVAQIYVDDIIFGGFPHDLVNNFINIMQSEFEMSMVGEL 120

Query: 121 SCFLGLQIK 130
           SCFLG QIK
Sbjct: 121 SCFLGFQIK 129

[Close]

BLAST of Cmc08g0225361 vs. ExPASy TrEMBL
Match: A0A5D3E2Y4 (F5J5.1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold349G00460 PE=4 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 4.2e-63
Identity = 120/129 (93.02%), Postives = 125/129 (96.90%), Query Frame = 0


Query: 1    MDVKSAFLNGYLNEEVYVAQPKGFVDSEHPKHVYKLNKALYGLKQAPRAWYERLTIYLRG 60
            MDVKSAFLNGYLN EVYVAQPKGFVD EHPKHVYKLNKALYGLKQAPRAWY RLT+YLRG
Sbjct: 893  MDVKSAFLNGYLNGEVYVAQPKGFVDFEHPKHVYKLNKALYGLKQAPRAWYNRLTVYLRG 952

Query: 61   KGYSRGEIDKTLFIHRESNQLLVAQIYVDDIIFGGFPQDFVHNFINIMQSEFEMSMVGEL 120
            +GYSRGEIDKTLFIHR+S+QLLVAQIYVDDIIFGGFPQD V+NFINIMQSEFEMSMVGEL
Sbjct: 953  RGYSRGEIDKTLFIHRKSDQLLVAQIYVDDIIFGGFPQDLVNNFINIMQSEFEMSMVGEL 1012

Query: 121  SCFLGLQIK 130
            SCFLGLQIK
Sbjct: 1013 SCFLGLQIK 1021

[Close]

BLAST of Cmc08g0225361 vs. ExPASy TrEMBL
Match: A0A5A7T169 (F5J5.1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G001730 PE=4 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 4.2e-63
Identity = 120/129 (93.02%), Postives = 125/129 (96.90%), Query Frame = 0


Query: 1    MDVKSAFLNGYLNEEVYVAQPKGFVDSEHPKHVYKLNKALYGLKQAPRAWYERLTIYLRG 60
            MDVKSAFLNGYLN EVYVAQPKGFVD EHPKHVYKLNKALYGLKQAPRAWY RLT+YLRG
Sbjct: 893  MDVKSAFLNGYLNGEVYVAQPKGFVDFEHPKHVYKLNKALYGLKQAPRAWYNRLTVYLRG 952

Query: 61   KGYSRGEIDKTLFIHRESNQLLVAQIYVDDIIFGGFPQDFVHNFINIMQSEFEMSMVGEL 120
            +GYSRGEIDKTLFIHR+S+QLLVAQIYVDDIIFGGFPQD V+NFINIMQSEFEMSMVGEL
Sbjct: 953  RGYSRGEIDKTLFIHRKSDQLLVAQIYVDDIIFGGFPQDLVNNFINIMQSEFEMSMVGEL 1012

Query: 121  SCFLGLQIK 130
            SCFLGLQIK
Sbjct: 1013 SCFLGLQIK 1021

[Close]

BLAST of Cmc08g0225361 vs. ExPASy TrEMBL
Match: A0A5D3DU96 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold95G00670 PE=4 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 7.1e-63
Identity = 118/129 (91.47%), Postives = 126/129 (97.67%), Query Frame = 0


Query: 1   MDVKSAFLNGYLNEEVYVAQPKGFVDSEHPKHVYKLNKALYGLKQAPRAWYERLTIYLRG 60
           MDVKSAFLNGYLNEEVY+AQPKGF DS+HPKHVYKLNKALYGLKQAPRAWY+RLT+YLRG
Sbjct: 1   MDVKSAFLNGYLNEEVYLAQPKGFFDSQHPKHVYKLNKALYGLKQAPRAWYDRLTVYLRG 60

Query: 61  KGYSRGEIDKTLFIHRESNQLLVAQIYVDDIIFGGFPQDFVHNFINIMQSEFEMSMVGEL 120
           KGYSRGEIDKTLFIHR+S+QLLVAQIYVDDIIF GFPQD ++NFINIMQSEFEMSMVGEL
Sbjct: 61  KGYSRGEIDKTLFIHRKSDQLLVAQIYVDDIIFRGFPQDLINNFINIMQSEFEMSMVGEL 120

Query: 121 SCFLGLQIK 130
           SCFLGLQIK
Sbjct: 121 SCFLGLQIK 129

[Close]

BLAST of Cmc08g0225361 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 88.2 bits (217), Expect = 5.3e-18
Identity = 49/132 (37.12%), Postives = 74/132 (56.06%), Query Frame = 0


Query: 1   MDVKSAFLNGYLNEEVYVAQPKGFV----DSEHPKHVYKLNKALYGLKQAPRAWYERLTI 60
           +D+ +AFLNG L+EE+Y+  P G+     DS  P  V  L K++YGLKQA R W+ + ++
Sbjct: 193 LDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSV 252

Query: 61  YLRGKGYSRGEIDKTLFIHRESNQLLVAQIYVDDIIFGGFPQDFVHNFINIMQSEFEMSM 120
            L G G+ +   D T F+   +   L   +YVDDII        V    + ++S F++  
Sbjct: 253 TLIGFGFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRD 312

Query: 121 VGELSCFLGLQI 129
           +G L  FLGL+I
Sbjct: 313 LGPLKYFLGLEI 324

The following BLAST results are available for this feature:

BLAST of Cmc08g0225361 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0056459.1	1.0e-63	93.80	putative gag-pol polyprotein [Cucumis melo var. makuwa] >TYK29068.1 putative gag...	[more]
TYK23188.1	6.6e-63	93.02	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0035966.1	8.6e-63	93.02	F5J5.1 [Cucumis melo var. makuwa]	[more]
TYK30437.1	8.6e-63	93.02	F5J5.1 [Cucumis melo var. makuwa]	[more]
KAA0033021.1	1.5e-62	92.25	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc08g0225361 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94HW2	1.6e-24	41.86	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	9.0e-23	39.53	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P10978	1.8e-18	36.43	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	2.5e-17	35.88	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P25600	3.7e-16	34.38	Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain AT...	[more]

BLAST of Cmc08g0225361 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E026	4.9e-64	93.80	Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A5D3DI97	3.2e-63	93.02	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G...	[more]
A0A5D3E2Y4	4.2e-63	93.02	F5J5.1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold349G00460 PE=4 SV...	[more]
A0A5A7T169	4.2e-63	93.02	F5J5.1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G001730 PE=4 SV...	[more]
A0A5D3DU96	7.1e-63	91.47	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold95G0...	[more]

BLAST of Cmc08g0225361 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	5.3e-18	37.12	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 1..128 e-value: 2.7E-35 score: 122.1
None	No IPR available	PANTHER	PTHR11439:SF331	SERINE/THREONINE-PROTEIN KINASE, ACTIVE SITE PROTEIN-RELATED	coord: 1..114
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 1..114
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..128

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0225361.1	Cmc08g0225361.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding