Cmc08g0225241 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0225241
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr08: 16121208 .. 16121795 (-)
RNA-Seq Expression	Cmc08g0225241
Synteny	Cmc08g0225241

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCAAAGCCATGGACTTGAAATGGTGTCTATGTACTTCAATTCAGTGTGGGAGCTTGTAGATCTACCTAAAGGGGTAAAACCTATAGGGTGCAAATGGATCTATCAGAGAAAGAGAGATTCAGCTGGGAAGGTACACACGTTCAAAGCTAGACTTGTAGCAAAAGAGTATACCGAAAGGGAAGGGGTTGACTATGAGGAAACTTTTTCTCTTGTTGCTATGTTAAAGTCTATAAGGATTTTCTTGTCCATAGCCACATTTTATGATTATGAAATATGGAAAATGGTTGTCAAGATTGCTTTTCTGAATGGCAATCTTGAAGAGAGTATCTTTATATCTCAGCTCGAGGGATTCATAACCCAAGGTCATGAGCAAAACGTTTACAAGCTGAATCTATCCATTTATGGGTTGAAACAAGCATCTAGATCTTGGAACATTAGGTTTGATATTGCAATCAAATCCTACGATTTTGATCAAAATGTTGATGAACCTTGTGTATATAAGAAAATCAACAAAGGTAAAGTAGCTTTCTTAGTACTTTATGTGGACGATATCCTCCTCAAGGGAATGATGTGGGACACCTAA

mRNA sequence

ATGGGTCAAAGCCATGGACTTGAAATGGTGTCTATGTACTTCAATTCAGTGTGGGAGCTTGTAGATCTACCTAAAGGGGTAAAACCTATAGGGTGCAAATGGATCTATCAGAGAAAGAGAGATTCAGCTGGGAAGGTACACACGTTCAAAGCTAGACTTGTAGCAAAAGAGTATACCGAAAGGGAAGGGGTTGACTATGAGGAAACTTTTTCTCTTGTTGCTATGTTAAAGTCTATAAGGATTTTCTTGTCCATAGCCACATTTTATGATTATGAAATATGGAAAATGGTTGTCAAGATTGCTTTTCTGAATGGCAATCTTGAAGAGAGTATCTTTATATCTCAGCTCGAGGGATTCATAACCCAAGGTCATGAGCAAAACGTTTACAAGCTGAATCTATCCATTTATGGGTTGAAACAAGCATCTAGATCTTGGAACATTAGGTTTGATATTGCAATCAAATCCTACGATTTTGATCAAAATGTTGATGAACCTTGTGTATATAAGAAAATCAACAAAGGTAAAGTAGCTTTCTTAGTACTTTATGTGGACGATATCCTCCTCAAGGGAATGATGTGGGACACCTAA

Coding sequence (CDS)

ATGGGTCAAAGCCATGGACTTGAAATGGTGTCTATGTACTTCAATTCAGTGTGGGAGCTTGTAGATCTACCTAAAGGGGTAAAACCTATAGGGTGCAAATGGATCTATCAGAGAAAGAGAGATTCAGCTGGGAAGGTACACACGTTCAAAGCTAGACTTGTAGCAAAAGAGTATACCGAAAGGGAAGGGGTTGACTATGAGGAAACTTTTTCTCTTGTTGCTATGTTAAAGTCTATAAGGATTTTCTTGTCCATAGCCACATTTTATGATTATGAAATATGGAAAATGGTTGTCAAGATTGCTTTTCTGAATGGCAATCTTGAAGAGAGTATCTTTATATCTCAGCTCGAGGGATTCATAACCCAAGGTCATGAGCAAAACGTTTACAAGCTGAATCTATCCATTTATGGGTTGAAACAAGCATCTAGATCTTGGAACATTAGGTTTGATATTGCAATCAAATCCTACGATTTTGATCAAAATGTTGATGAACCTTGTGTATATAAGAAAATCAACAAAGGTAAAGTAGCTTTCTTAGTACTTTATGTGGACGATATCCTCCTCAAGGGAATGATGTGGGACACCTAA

Protein sequence

MGQSHGLEMVSMYFNSVWELVDLPKGVKPIGCKWIYQRKRDSAGKVHTFKARLVAKEYTEREGVDYEETFSLVAMLKSIRIFLSIATFYDYEIWKMVVKIAFLNGNLEESIFISQLEGFITQGHEQNVYKLNLSIYGLKQASRSWNIRFDIAIKSYDFDQNVDEPCVYKKINKGKVAFLVLYVDDILLKGMMWDT

Homology

[Close]

BLAST of Cmc08g0225241 vs. NCBI nr
Match: TYK02506.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 364.4 bits (934), Expect = 6.2e-97
Identity = 180/183 (98.36%), Postives = 181/183 (98.91%), Query Frame = 0


Query: 7   LEMVSMYFNSVWELVDLPKGVKPIGCKWIYQRKRDSAGKVHTFKARLVAKEYTEREGVDY 66
           LEMVSMYFNSVWELVDLPKGVKPIGCKWIYQRKRDSAGKVHTFKARLVAKEYT+REGVDY
Sbjct: 474 LEMVSMYFNSVWELVDLPKGVKPIGCKWIYQRKRDSAGKVHTFKARLVAKEYTQREGVDY 533

Query: 67  EETFSLVAMLKSIRIFLSIATFYDYEIWKMVVKIAFLNGNLEESIFISQLEGFITQGHEQ 126
           EETFSLVAMLKSIRIFLSIATFYDYEIWKMVVKIAFLNGNLEESIFISQLEGFITQG EQ
Sbjct: 534 EETFSLVAMLKSIRIFLSIATFYDYEIWKMVVKIAFLNGNLEESIFISQLEGFITQGQEQ 593

Query: 127 NVYKLNLSIYGLKQASRSWNIRFDIAIKSYDFDQNVDEPCVYKKINKGKVAFLVLYVDDI 186
           NVYKLNLSIYGLKQASRSWNIRFD AIKSYDFDQNVDEPCVYKKINKGKVAFLVLYVDDI
Sbjct: 594 NVYKLNLSIYGLKQASRSWNIRFDTAIKSYDFDQNVDEPCVYKKINKGKVAFLVLYVDDI 653

Query: 187 LLK 190
           LLK
Sbjct: 654 LLK 656

[Close]

BLAST of Cmc08g0225241 vs. NCBI nr
Match: TYK15984.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 326.6 bits (836), Expect = 1.4e-85
Identity = 164/184 (89.13%), Postives = 169/184 (91.85%), Query Frame = 0


Query: 7   LEMVSMYFNSVWELVDLPKGVKPIGCKWIYQRKRDSAGKVHTFKARLVAKEYTEREGVDY 66
           LEM SMYFNSVWELVDLP+GVKPIGCKWIY+RKRDSAGKV TFKARLVAK YT+REGVDY
Sbjct: 344 LEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVDY 403

Query: 67  EETFSLVAMLKSIRIFLSIATFYDYEIWKMVVKIAFLNGNLEESIFISQLEGFITQGHEQ 126
           EETFS VAMLKSIRI LSIATFYDYEIW+M VK AFLNGNLEESIF+SQ EGFITQG EQ
Sbjct: 404 EETFSPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIFMSQPEGFITQGQEQ 463

Query: 127 NVYKLNLSIYGLKQASRSWNIRFDIAIKSYDFDQNVDEPCVYKKINKGKVAFLVLYVDDI 186
            V KLN SIYGLKQASRSWNIRFD AIKSY FDQNVDEPCVYKKINKGKVAFLVLYVDDI
Sbjct: 464 KVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDI 523

Query: 187 LLKG 191
           LL G
Sbjct: 524 LLIG 527

[Close]

BLAST of Cmc08g0225241 vs. NCBI nr
Match: KAA0025945.1 (gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0035786.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0040492.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0041262.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 326.6 bits (836), Expect = 1.4e-85
Identity = 164/184 (89.13%), Postives = 169/184 (91.85%), Query Frame = 0


Query: 7   LEMVSMYFNSVWELVDLPKGVKPIGCKWIYQRKRDSAGKVHTFKARLVAKEYTEREGVDY 66
           LEM SMYFNSVWELVDLP+GVKPIGCKWIY+RKRDSAGKV TFKARLVAK YT+REGVDY
Sbjct: 734 LEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVDY 793

Query: 67  EETFSLVAMLKSIRIFLSIATFYDYEIWKMVVKIAFLNGNLEESIFISQLEGFITQGHEQ 126
           EETFS VAMLKSIRI LSIATFYDYEIW+M VK AFLNGNLEESIF+SQ EGFITQG EQ
Sbjct: 794 EETFSPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIFMSQPEGFITQGQEQ 853

Query: 127 NVYKLNLSIYGLKQASRSWNIRFDIAIKSYDFDQNVDEPCVYKKINKGKVAFLVLYVDDI 186
            V KLN SIYGLKQASRSWNIRFD AIKSY FDQNVDEPCVYKKINKGKVAFLVLYVDDI
Sbjct: 854 KVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDI 913

Query: 187 LLKG 191
           LL G
Sbjct: 914 LLIG 917

[Close]

BLAST of Cmc08g0225241 vs. NCBI nr
Match: KAA0059226.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 326.6 bits (836), Expect = 1.4e-85
Identity = 164/184 (89.13%), Postives = 169/184 (91.85%), Query Frame = 0


Query: 7   LEMVSMYFNSVWELVDLPKGVKPIGCKWIYQRKRDSAGKVHTFKARLVAKEYTEREGVDY 66
           LEM SMYFNSVWELVDLP+GVKPIGCKWIY+RKRDSAGKV TFKARLVAK YT+REGVDY
Sbjct: 608 LEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVDY 667

Query: 67  EETFSLVAMLKSIRIFLSIATFYDYEIWKMVVKIAFLNGNLEESIFISQLEGFITQGHEQ 126
           EETFS VAMLKSIRI LSIATFYDYEIW+M VK AFLNGNLEESIF+SQ EGFITQG EQ
Sbjct: 668 EETFSPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIFMSQPEGFITQGQEQ 727

Query: 127 NVYKLNLSIYGLKQASRSWNIRFDIAIKSYDFDQNVDEPCVYKKINKGKVAFLVLYVDDI 186
            V KLN SIYGLKQASRSWNIRFD AIKSY FDQNVDEPCVYKKINKGKVAFLVLYVDDI
Sbjct: 728 KVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDI 787

Query: 187 LLKG 191
           LL G
Sbjct: 788 LLIG 791

[Close]

BLAST of Cmc08g0225241 vs. NCBI nr
Match: KAA0050437.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 323.6 bits (828), Expect = 1.2e-84
Identity = 162/184 (88.04%), Postives = 167/184 (90.76%), Query Frame = 0


Query: 7   LEMVSMYFNSVWELVDLPKGVKPIGCKWIYQRKRDSAGKVHTFKARLVAKEYTEREGVDY 66
           LEM SMYFN VWELVDLP+GVKPIGCKWIY+RKRDSAGKV TFKARLVAK YT+REGVDY
Sbjct: 420 LEMESMYFNLVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVDY 479

Query: 67  EETFSLVAMLKSIRIFLSIATFYDYEIWKMVVKIAFLNGNLEESIFISQLEGFITQGHEQ 126
           EETFSLVAML+SIRI LSIATFYDYEIWKM VK A LNGNLEESIF+SQ EGFITQG EQ
Sbjct: 480 EETFSLVAMLRSIRILLSIATFYDYEIWKMDVKTALLNGNLEESIFMSQREGFITQGQEQ 539

Query: 127 NVYKLNLSIYGLKQASRSWNIRFDIAIKSYDFDQNVDEPCVYKKINKGKVAFLVLYVDDI 186
            V KLN SIYGLKQASRSWNIRFD AIK Y FDQNVDEPCVYKKINKGKVAFLVLYVDDI
Sbjct: 540 KVCKLNRSIYGLKQASRSWNIRFDTAIKCYGFDQNVDEPCVYKKINKGKVAFLVLYVDDI 599

Query: 187 LLKG 191
           LL G
Sbjct: 600 LLIG 603

[Close]

BLAST of Cmc08g0225241 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 1.5e-40
Identity = 82/184 (44.57%), Postives = 124/184 (67.39%), Query Frame = 0


Query: 8    EMVSMYFNSVWELVDLPKGVKPIGCKWIYQRKRDSAGKVHTFKARLVAKEYTEREGVDYE 67
            EM S+  N  ++LV+LPKG +P+ CKW+++ K+D   K+  +KARLV K + +++G+D++
Sbjct: 833  EMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGFEQKKGIDFD 892

Query: 68   ETFSLVAMLKSIRIFLSIATFYDYEIWKMVVKIAFLNGNLEESIFISQLEGFITQGHEQN 127
            E FS V  + SIR  LS+A   D E+ ++ VK AFL+G+LEE I++ Q EGF   G +  
Sbjct: 893  EIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHM 952

Query: 128  VYKLNLSIYGLKQASRSWNIRFDIAIKSYDFDQNVDEPCVY-KKINKGKVAFLVLYVDDI 187
            V KLN S+YGLKQA R W ++FD  +KS  + +   +PCVY K+ ++     L+LYVDD+
Sbjct: 953  VCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNFIILLLYVDDM 1012

Query: 188  LLKG 191
            L+ G
Sbjct: 1013 LIVG 1016

[Close]

BLAST of Cmc08g0225241 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 8.8e-30
Identity = 69/189 (36.51%), Postives = 110/189 (58.20%), Query Frame = 0


Query: 3    QSHGLEMVSMYFNSVWELV-DLPKGVKPIGCKWIYQRKRDSAGKVHTFKARLVAKEYTER 62
            Q+ G E+ +   N  W+LV   P  V  +GC+WI+ +K +S G ++ +KARLVAK Y +R
Sbjct: 953  QAMGSEINAQIGNHTWDLVPPPPPSVTIVGCRWIFTKKFNSDGSLNRYKARLVAKGYNQR 1012

Query: 63   EGVDYEETFSLVAMLKSIRIFLSIATFYDYEIWKMVVKIAFLNGNLEESIFISQLEGFIT 122
             G+DY ETFS V    SIRI L +A    + I ++ V  AFL G L + +++SQ  GF+ 
Sbjct: 1013 PGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDEVYMSQPPGFVD 1072

Query: 123  QGHEQNVYKLNLSIYGLKQASRSWNIRFDIAIKSYDFDQNVDEPCVYKKINKGKVAFLVL 182
            +     V +L  +IYGLKQA R+W +     + +  F  ++ +  ++       + ++++
Sbjct: 1073 KDRPDYVCRLRKAIYGLKQAPRAWYVELRTYLLTVGFVNSISDTSLFVLQRGRSIIYMLV 1132

Query: 183  YVDDILLKG 191
            YVDDIL+ G
Sbjct: 1133 YVDDILITG 1141

[Close]

BLAST of Cmc08g0225241 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.5e-29
Identity = 70/186 (37.63%), Postives = 108/186 (58.06%), Query Frame = 0


Query: 6    GLEMVSMYFNSVWELVDLPKG-VKPIGCKWIYQRKRDSAGKVHTFKARLVAKEYTEREGV 65
            G E+ +   N  W+LV  P   V  +GC+WI+ +K +S G ++ +KARLVAK Y +R G+
Sbjct: 973  GSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARLVAKGYNQRPGL 1032

Query: 66   DYEETFSLVAMLKSIRIFLSIATFYDYEIWKMVVKIAFLNGNLEESIFISQLEGFITQGH 125
            DY ETFS V    SIRI L +A    + I ++ V  AFL G L + +++SQ  GFI +  
Sbjct: 1033 DYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPGFIDKDR 1092

Query: 126  EQNVYKLNLSIYGLKQASRSWNIRFDIAIKSYDFDQNVDEPCVYKKINKGKVAFLVLYVD 185
               V KL  ++YGLKQA R+W +     + +  F  +V +  ++       + ++++YVD
Sbjct: 1093 PNYVCKLRKALYGLKQAPRAWYVELRNYLLTIGFVNSVSDTSLFVLQRGKSIVYMLVYVD 1152

Query: 186  DILLKG 191
            DIL+ G
Sbjct: 1153 DILITG 1158

[Close]

BLAST of Cmc08g0225241 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 124.0 bits (310), Expect = 1.8e-27
Identity = 66/183 (36.07%), Postives = 109/183 (59.56%), Query Frame = 0


Query: 8    EMVSMYFNSVWELVDLPKGVKPIGCKWIYQRKRDSAGKVHTFKARLVAKEYTEREGVDYE 67
            E+ +   N+ W +   P+    +  +W++  K +  G    +KARLVA+ +T++  +DYE
Sbjct: 913  ELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQKYQIDYE 972

Query: 68   ETFSLVAMLKSIRIFLSIATFYDYEIWKMVVKIAFLNGNLEESIFISQLEGFITQGHEQN 127
            ETF+ VA + S R  LS+   Y+ ++ +M VK AFLNG L+E I++   +G     +  N
Sbjct: 973  ETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQGI--SCNSDN 1032

Query: 128  VYKLNLSIYGLKQASRSWNIRFDIAIKSYDFDQNVDEPCVY--KKINKGKVAFLVLYVDD 187
            V KLN +IYGLKQA+R W   F+ A+K  +F  +  + C+Y   K N  +  +++LYVDD
Sbjct: 1033 VCKLNKAIYGLKQAARCWFEVFEQALKECEFVNSSVDRCIYILDKGNINENIYVLLYVDD 1092

Query: 188  ILL 189
            +++
Sbjct: 1093 VVI 1093

[Close]

BLAST of Cmc08g0225241 vs. ExPASy Swiss-Prot
Match: P92520 (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.1e-08
Identity = 30/79 (37.97%), Postives = 46/79 (58.23%), Query Frame = 0


Query: 8   EMVSMYFNSVWELVDLPKGVKPIGCKWIYQRKRDSAGKVHTFKARLVAKEYTEREGVDYE 67
           E+ ++  N  W LV  P     +GCKW+++ K  S G +   KARLVAK + + EG+ + 
Sbjct: 47  ELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFV 106

Query: 68  ETFSLVAMLKSIRIFLSIA 87
           ET+S V    +IR  L++A
Sbjct: 107 ETYSPVVRTATIRTILNVA 125

[Close]

BLAST of Cmc08g0225241 vs. ExPASy TrEMBL
Match: A0A5D3BWA6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold784G00310 PE=4 SV=1)

HSP 1 Score: 364.4 bits (934), Expect = 3.0e-97
Identity = 180/183 (98.36%), Postives = 181/183 (98.91%), Query Frame = 0


Query: 7   LEMVSMYFNSVWELVDLPKGVKPIGCKWIYQRKRDSAGKVHTFKARLVAKEYTEREGVDY 66
           LEMVSMYFNSVWELVDLPKGVKPIGCKWIYQRKRDSAGKVHTFKARLVAKEYT+REGVDY
Sbjct: 474 LEMVSMYFNSVWELVDLPKGVKPIGCKWIYQRKRDSAGKVHTFKARLVAKEYTQREGVDY 533

Query: 67  EETFSLVAMLKSIRIFLSIATFYDYEIWKMVVKIAFLNGNLEESIFISQLEGFITQGHEQ 126
           EETFSLVAMLKSIRIFLSIATFYDYEIWKMVVKIAFLNGNLEESIFISQLEGFITQG EQ
Sbjct: 534 EETFSLVAMLKSIRIFLSIATFYDYEIWKMVVKIAFLNGNLEESIFISQLEGFITQGQEQ 593

Query: 127 NVYKLNLSIYGLKQASRSWNIRFDIAIKSYDFDQNVDEPCVYKKINKGKVAFLVLYVDDI 186
           NVYKLNLSIYGLKQASRSWNIRFD AIKSYDFDQNVDEPCVYKKINKGKVAFLVLYVDDI
Sbjct: 594 NVYKLNLSIYGLKQASRSWNIRFDTAIKSYDFDQNVDEPCVYKKINKGKVAFLVLYVDDI 653

Query: 187 LLK 190
           LLK
Sbjct: 654 LLK 656

[Close]

BLAST of Cmc08g0225241 vs. ExPASy TrEMBL
Match: A0A5A7TZD0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00090 PE=4 SV=1)

HSP 1 Score: 326.6 bits (836), Expect = 6.9e-86
Identity = 164/184 (89.13%), Postives = 169/184 (91.85%), Query Frame = 0


Query: 7   LEMVSMYFNSVWELVDLPKGVKPIGCKWIYQRKRDSAGKVHTFKARLVAKEYTEREGVDY 66
           LEM SMYFNSVWELVDLP+GVKPIGCKWIY+RKRDSAGKV TFKARLVAK YT+REGVDY
Sbjct: 734 LEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVDY 793

Query: 67  EETFSLVAMLKSIRIFLSIATFYDYEIWKMVVKIAFLNGNLEESIFISQLEGFITQGHEQ 126
           EETFS VAMLKSIRI LSIATFYDYEIW+M VK AFLNGNLEESIF+SQ EGFITQG EQ
Sbjct: 794 EETFSPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIFMSQPEGFITQGQEQ 853

Query: 127 NVYKLNLSIYGLKQASRSWNIRFDIAIKSYDFDQNVDEPCVYKKINKGKVAFLVLYVDDI 186
            V KLN SIYGLKQASRSWNIRFD AIKSY FDQNVDEPCVYKKINKGKVAFLVLYVDDI
Sbjct: 854 KVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDI 913

Query: 187 LLKG 191
           LL G
Sbjct: 914 LLIG 917

[Close]

BLAST of Cmc08g0225241 vs. ExPASy TrEMBL
Match: A0A5D3CYF4 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G001110 PE=4 SV=1)

HSP 1 Score: 326.6 bits (836), Expect = 6.9e-86
Identity = 164/184 (89.13%), Postives = 169/184 (91.85%), Query Frame = 0


Query: 7   LEMVSMYFNSVWELVDLPKGVKPIGCKWIYQRKRDSAGKVHTFKARLVAKEYTEREGVDY 66
           LEM SMYFNSVWELVDLP+GVKPIGCKWIY+RKRDSAGKV TFKARLVAK YT+REGVDY
Sbjct: 344 LEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVDY 403

Query: 67  EETFSLVAMLKSIRIFLSIATFYDYEIWKMVVKIAFLNGNLEESIFISQLEGFITQGHEQ 126
           EETFS VAMLKSIRI LSIATFYDYEIW+M VK AFLNGNLEESIF+SQ EGFITQG EQ
Sbjct: 404 EETFSPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIFMSQPEGFITQGQEQ 463

Query: 127 NVYKLNLSIYGLKQASRSWNIRFDIAIKSYDFDQNVDEPCVYKKINKGKVAFLVLYVDDI 186
            V KLN SIYGLKQASRSWNIRFD AIKSY FDQNVDEPCVYKKINKGKVAFLVLYVDDI
Sbjct: 464 KVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDI 523

Query: 187 LLKG 191
           LL G
Sbjct: 524 LLIG 527

[Close]

BLAST of Cmc08g0225241 vs. ExPASy TrEMBL
Match: A0A5A7UYE8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G001570 PE=4 SV=1)

HSP 1 Score: 326.6 bits (836), Expect = 6.9e-86
Identity = 164/184 (89.13%), Postives = 169/184 (91.85%), Query Frame = 0


Query: 7   LEMVSMYFNSVWELVDLPKGVKPIGCKWIYQRKRDSAGKVHTFKARLVAKEYTEREGVDY 66
           LEM SMYFNSVWELVDLP+GVKPIGCKWIY+RKRDSAGKV TFKARLVAK YT+REGVDY
Sbjct: 608 LEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVDY 667

Query: 67  EETFSLVAMLKSIRIFLSIATFYDYEIWKMVVKIAFLNGNLEESIFISQLEGFITQGHEQ 126
           EETFS VAMLKSIRI LSIATFYDYEIW+M VK AFLNGNLEESIF+SQ EGFITQG EQ
Sbjct: 668 EETFSPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIFMSQPEGFITQGQEQ 727

Query: 127 NVYKLNLSIYGLKQASRSWNIRFDIAIKSYDFDQNVDEPCVYKKINKGKVAFLVLYVDDI 186
            V KLN SIYGLKQASRSWNIRFD AIKSY FDQNVDEPCVYKKINKGKVAFLVLYVDDI
Sbjct: 728 KVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDI 787

Query: 187 LLKG 191
           LL G
Sbjct: 788 LLIG 791

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BLAST of Cmc08g0225241 vs. ExPASy TrEMBL
Match: A0A5A7U7T0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold175G00310 PE=4 SV=1)

HSP 1 Score: 323.6 bits (828), Expect = 5.9e-85
Identity = 162/184 (88.04%), Postives = 167/184 (90.76%), Query Frame = 0


Query: 7   LEMVSMYFNSVWELVDLPKGVKPIGCKWIYQRKRDSAGKVHTFKARLVAKEYTEREGVDY 66
           LEM SMYFN VWELVDLP+GVKPIGCKWIY+RKRDSAGKV TFKARLVAK YT+REGVDY
Sbjct: 420 LEMESMYFNLVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVDY 479

Query: 67  EETFSLVAMLKSIRIFLSIATFYDYEIWKMVVKIAFLNGNLEESIFISQLEGFITQGHEQ 126
           EETFSLVAML+SIRI LSIATFYDYEIWKM VK A LNGNLEESIF+SQ EGFITQG EQ
Sbjct: 480 EETFSLVAMLRSIRILLSIATFYDYEIWKMDVKTALLNGNLEESIFMSQREGFITQGQEQ 539

Query: 127 NVYKLNLSIYGLKQASRSWNIRFDIAIKSYDFDQNVDEPCVYKKINKGKVAFLVLYVDDI 186
            V KLN SIYGLKQASRSWNIRFD AIK Y FDQNVDEPCVYKKINKGKVAFLVLYVDDI
Sbjct: 540 KVCKLNRSIYGLKQASRSWNIRFDTAIKCYGFDQNVDEPCVYKKINKGKVAFLVLYVDDI 599

Query: 187 LLKG 191
           LL G
Sbjct: 600 LLIG 603

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BLAST of Cmc08g0225241 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 142.9 bits (359), Expect = 2.7e-34
Identity = 73/185 (39.46%), Postives = 114/185 (61.62%), Query Frame = 0


Query: 8   EMVSMYFNSVWELVDLPKGVKPIGCKWIYQRKRDSAGKVHTFKARLVAKEYTEREGVDYE 67
           E+ +M     WE+  LP   KPIGCKW+Y+ K +S G +  +KARLVAK YT++EG+D+ 
Sbjct: 105 EIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGYTQQEGIDFI 164

Query: 68  ETFSLVAMLKSIRIFLSIATFYDYEIWKMVVKIAFLNGNLEESIFISQLEGFIT-QGHE- 127
           ETFS V  L S+++ L+I+  Y++ + ++ +  AFLNG+L+E I++    G+   QG   
Sbjct: 165 ETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYAARQGDSL 224

Query: 128 --QNVYKLNLSIYGLKQASRSWNIRFDIAIKSYDFDQNVDEPCVYKKINKGKVAFLVLYV 187
               V  L  SIYGLKQASR W ++F + +  + F Q+  +   + KI       +++YV
Sbjct: 225 PPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSDHTYFLKITATLFLCVLVYV 284

Query: 188 DDILL 189
           DDI++
Sbjct: 285 DDIII 289

[Close]

BLAST of Cmc08g0225241 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 61.6 bits (148), Expect = 8.0e-10
Identity = 30/79 (37.97%), Postives = 46/79 (58.23%), Query Frame = 0


Query: 8   EMVSMYFNSVWELVDLPKGVKPIGCKWIYQRKRDSAGKVHTFKARLVAKEYTEREGVDYE 67
           E+ ++  N  W LV  P     +GCKW+++ K  S G +   KARLVAK + + EG+ + 
Sbjct: 47  ELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFV 106

Query: 68  ETFSLVAMLKSIRIFLSIA 87
           ET+S V    +IR  L++A
Sbjct: 107 ETYSPVVRTATIRTILNVA 125

The following BLAST results are available for this feature:

BLAST of Cmc08g0225241 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK02506.1	6.2e-97	98.36	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK15984.1	1.4e-85	89.13	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0025945.1	1.4e-85	89.13	gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumi...	[more]
KAA0059226.1	1.4e-85	89.13	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0050437.1	1.2e-84	88.04	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc08g0225241 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.5e-40	44.57	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q9ZT94	8.8e-30	36.51	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	1.5e-29	37.63	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P04146	1.8e-27	36.07	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P92520	1.1e-08	37.97	Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cmc08g0225241 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BWA6	3.0e-97	98.36	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold784G0031...	[more]
A0A5A7TZD0	6.9e-86	89.13	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G000...	[more]
A0A5D3CYF4	6.9e-86	89.13	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00111...	[more]
A0A5A7UYE8	6.9e-86	89.13	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G0015...	[more]
A0A5A7U7T0	5.9e-85	88.04	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold175G0031...	[more]

BLAST of Cmc08g0225241 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	2.7e-34	39.46	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00820.1	8.0e-10	37.97	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 15..190 e-value: 6.4E-49 score: 166.7
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 8..190
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 15..189

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0225241.1	Cmc08g0225241.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding