Cmc08g0224981 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0224981
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Pol protein
Location	CMiso1.1chr08: 15481053 .. 15481613 (+)
RNA-Seq Expression	Cmc08g0224981
Synteny	Cmc08g0224981

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTTCATTACAGGACTGCCCAGAACCGTGATGGGTTTCACAGTGATTTGGGTTGTTGTCGACAGGCTTACCAAATCAACACTCTTCATTTCGGGGAAATCCACTTATACTGATAGTAAGTGGGCACAGTTGTACATGTCTGAGATAGTGAGACTACATGGAGTGCCAGTGTCGATTGTTTCAGATAGAGATGCCTATTTCACTTCTACGTTCTGGAAGGGTTTACAGGCTGCTATGGGCATGAGGTTGGACTTTAGTAAAGCTTTCCACCCACAGATTGATGGTCAGACTGAGCGTCTGAACCAAGTTATAGAGGATATGTTACGAGCTTGTGCATTAGAATTCCCAGGTAGTTGGGATTCTCACTTGTATTTGATGGAATTTGCTTATAATAACAGTTTTCAGGCTACAATTGGCATGACACCATTTGAGGCCTTGTACGACAAATGTTGTAGATCCCCTGTTTGCTGGGATGAGGTTGGTGAGCAGAGATTGATGGGTTCTGAGTTAGTGCAGTCTACTAACAAAGCGATACAGAAAATTAGATCACGTATGTAG

mRNA sequence

ATGGATTTCATTACAGGACTGCCCAGAACCGTGATGGGTTTCACAGTGATTTGGGTTGTTGTCGACAGGCTTACCAAATCAACACTCTTCATTTCGGGGAAATCCACTTATACTGATAGTAAGTGGGCACAGTTGTACATGTCTGAGATAGTGAGACTACATGGAGTGCCAGTGTCGATTGTTTCAGATAGAGATGCCTATTTCACTTCTACGTTCTGGAAGGGTTTACAGGCTGCTATGGGCATGAGGTTGGACTTTAGTAAAGCTTTCCACCCACAGATTGATGGTCAGACTGAGCGTCTGAACCAAGTTATAGAGGATATGTTACGAGCTTGTGCATTAGAATTCCCAGGTAGTTGGGATTCTCACTTGTATTTGATGGAATTTGCTTATAATAACAGTTTTCAGGCTACAATTGGCATGACACCATTTGAGGCCTTGTACGACAAATGTTGTAGATCCCCTGTTTGCTGGGATGAGGTTGGTGAGCAGAGATTGATGGGTTCTGAGTTAGTGCAGTCTACTAACAAAGCGATACAGAAAATTAGATCACGTATGTAG

Coding sequence (CDS)

ATGGATTTCATTACAGGACTGCCCAGAACCGTGATGGGTTTCACAGTGATTTGGGTTGTTGTCGACAGGCTTACCAAATCAACACTCTTCATTTCGGGGAAATCCACTTATACTGATAGTAAGTGGGCACAGTTGTACATGTCTGAGATAGTGAGACTACATGGAGTGCCAGTGTCGATTGTTTCAGATAGAGATGCCTATTTCACTTCTACGTTCTGGAAGGGTTTACAGGCTGCTATGGGCATGAGGTTGGACTTTAGTAAAGCTTTCCACCCACAGATTGATGGTCAGACTGAGCGTCTGAACCAAGTTATAGAGGATATGTTACGAGCTTGTGCATTAGAATTCCCAGGTAGTTGGGATTCTCACTTGTATTTGATGGAATTTGCTTATAATAACAGTTTTCAGGCTACAATTGGCATGACACCATTTGAGGCCTTGTACGACAAATGTTGTAGATCCCCTGTTTGCTGGGATGAGGTTGGTGAGCAGAGATTGATGGGTTCTGAGTTAGTGCAGTCTACTAACAAAGCGATACAGAAAATTAGATCACGTATGTAG

Protein sequence

MDFITGLPRTVMGFTVIWVVVDRLTKSTLFISGKSTYTDSKWAQLYMSEIVRLHGVPVSIVSDRDAYFTSTFWKGLQAAMGMRLDFSKAFHPQIDGQTERLNQVIEDMLRACALEFPGSWDSHLYLMEFAYNNSFQATIGMTPFEALYDKCCRSPVCWDEVGEQRLMGSELVQSTNKAIQKIRSRM

Homology

[Close]

BLAST of Cmc08g0224981 vs. NCBI nr
Match: KAA0045421.1 (pol protein [Cucumis melo var. makuwa] >TYK04273.1 pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 375.2 bits (962), Expect = 3.3e-100
Identity = 180/181 (99.45%), Postives = 181/181 (100.00%), Query Frame = 0


Query: 5   TGLPRTVMGFTVIWVVVDRLTKSTLFISGKSTYTDSKWAQLYMSEIVRLHGVPVSIVSDR 64
           +GLPRTVMGFTVIWVVVDRLTKSTLFISGKSTYTDSKWAQLYMSEIVRLHGVPVSIVSDR
Sbjct: 801 SGLPRTVMGFTVIWVVVDRLTKSTLFISGKSTYTDSKWAQLYMSEIVRLHGVPVSIVSDR 860

Query: 65  DAYFTSTFWKGLQAAMGMRLDFSKAFHPQIDGQTERLNQVIEDMLRACALEFPGSWDSHL 124
           DAYFTSTFWKGLQAAMGMRLDFSKAFHPQIDGQTERLNQVIEDMLRACALEFPGSWDSHL
Sbjct: 861 DAYFTSTFWKGLQAAMGMRLDFSKAFHPQIDGQTERLNQVIEDMLRACALEFPGSWDSHL 920

Query: 125 YLMEFAYNNSFQATIGMTPFEALYDKCCRSPVCWDEVGEQRLMGSELVQSTNKAIQKIRS 184
           YLMEFAYNNSFQATIGMTPFEALYDKCCRSPVCWDEVGEQRLMGSELVQSTNKAIQKIRS
Sbjct: 921 YLMEFAYNNSFQATIGMTPFEALYDKCCRSPVCWDEVGEQRLMGSELVQSTNKAIQKIRS 980

Query: 185 R 186
           R
Sbjct: 981 R 981

[Close]

BLAST of Cmc08g0224981 vs. NCBI nr
Match: KAA0041424.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 346.3 bits (887), Expect = 1.7e-91
Identity = 165/186 (88.71%), Postives = 172/186 (92.47%), Query Frame = 0


Query: 1   MDFITGLPRTVMGFTVIWVVVDRLTKSTLFISGKSTYTDSKWAQLYMSEIVRLHGVPVSI 60
           MDFITGLPRT+ GFTVIWVVVDRLTKS  F+ GKSTYT SKWAQLYMSEIVRLHGVPVSI
Sbjct: 1   MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI 60

Query: 61  VSDRDAYFTSTFWKGLQAAMGMRLDFSKAFHPQIDGQTERLNQVIEDMLRACALEFPGSW 120
           VSDRDA FTS FWKGLQ AMG RLDFS AFHPQ DGQTERLNQV+EDMLRACALEFPGSW
Sbjct: 61  VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 120

Query: 121 DSHLYLMEFAYNNSFQATIGMTPFEALYDKCCRSPVCWDEVGEQRLMGSELVQSTNKAIQ 180
           DSHL+LMEFAYNNS+QATIGM PFEALY KCCRSPVCWDEVGEQRLMG ELVQSTN+A+Q
Sbjct: 121 DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWDEVGEQRLMGPELVQSTNEAVQ 180

Query: 181 KIRSRM 187
           KIRSRM
Sbjct: 181 KIRSRM 186

[Close]

BLAST of Cmc08g0224981 vs. NCBI nr
Match: KAA0061618.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 345.9 bits (886), Expect = 2.2e-91
Identity = 165/186 (88.71%), Postives = 172/186 (92.47%), Query Frame = 0


Query: 1    MDFITGLPRTVMGFTVIWVVVDRLTKSTLFISGKSTYTDSKWAQLYMSEIVRLHGVPVSI 60
            MDFITGLPRT+ GFTVIWVVVDRLTKS  F+ GKSTYT SKWAQLYMSEIVRLHGVPVSI
Sbjct: 1258 MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI 1317

Query: 61   VSDRDAYFTSTFWKGLQAAMGMRLDFSKAFHPQIDGQTERLNQVIEDMLRACALEFPGSW 120
            VSDRDA FTS FWKGLQ AMG RLDFS AFHPQ DGQTER+NQV+EDMLRACALEFPGSW
Sbjct: 1318 VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERMNQVLEDMLRACALEFPGSW 1377

Query: 121  DSHLYLMEFAYNNSFQATIGMTPFEALYDKCCRSPVCWDEVGEQRLMGSELVQSTNKAIQ 180
            DSHL+LMEFAYNNS+QATIGM PFEALYDKCCRSPVCW EVGEQRLMG ELVQSTN+AIQ
Sbjct: 1378 DSHLHLMEFAYNNSYQATIGMAPFEALYDKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQ 1437

Query: 181  KIRSRM 187
            KIRSRM
Sbjct: 1438 KIRSRM 1443

[Close]

BLAST of Cmc08g0224981 vs. NCBI nr
Match: KAA0064005.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 344.7 bits (883), Expect = 4.8e-91
Identity = 165/186 (88.71%), Postives = 172/186 (92.47%), Query Frame = 0


Query: 1   MDFITGLPRTVMGFTVIWVVVDRLTKSTLFISGKSTYTDSKWAQLYMSEIVRLHGVPVSI 60
           MDFITGLPRT+ GFTVIWVVVDRLTKS  F+ GKSTYT SKWAQLYMSEIVRLHGVPVSI
Sbjct: 272 MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI 331

Query: 61  VSDRDAYFTSTFWKGLQAAMGMRLDFSKAFHPQIDGQTERLNQVIEDMLRACALEFPGSW 120
           VSDRDA FTS FWKGLQ AMG RLDFS AFHPQ DGQTERLNQV+EDMLRACALEFPGSW
Sbjct: 332 VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 391

Query: 121 DSHLYLMEFAYNNSFQATIGMTPFEALYDKCCRSPVCWDEVGEQRLMGSELVQSTNKAIQ 180
           DSHL+LMEFAYNNS+QATIGMTPFEALY +CCRSPVCW EVGEQRLMG ELVQSTN+AIQ
Sbjct: 392 DSHLHLMEFAYNNSYQATIGMTPFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTNEAIQ 451

Query: 181 KIRSRM 187
           KIRSRM
Sbjct: 452 KIRSRM 457

[Close]

BLAST of Cmc08g0224981 vs. NCBI nr
Match: KAA0054359.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK12397.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 344.4 bits (882), Expect = 6.3e-91
Identity = 165/186 (88.71%), Postives = 173/186 (93.01%), Query Frame = 0


Query: 1    MDFITGLPRTVMGFTVIWVVVDRLTKSTLFISGKSTYTDSKWAQLYMSEIVRLHGVPVSI 60
            MDFITGLP+T+ GFTVIWVVVDRLTKST FI GKSTYT SKWAQLYMSEIVRLHGVPVSI
Sbjct: 857  MDFITGLPKTLRGFTVIWVVVDRLTKSTHFIPGKSTYTASKWAQLYMSEIVRLHGVPVSI 916

Query: 61   VSDRDAYFTSTFWKGLQAAMGMRLDFSKAFHPQIDGQTERLNQVIEDMLRACALEFPGSW 120
            VSDRDA FTS FWKG+QAAMG RLDFS  FHP+ DGQTERLNQV+E+MLRACALEF GSW
Sbjct: 917  VSDRDARFTSKFWKGIQAAMGTRLDFSTTFHPKTDGQTERLNQVLENMLRACALEFQGSW 976

Query: 121  DSHLYLMEFAYNNSFQATIGMTPFEALYDKCCRSPVCWDEVGEQRLMGSELVQSTNKAIQ 180
            DSHL+LMEFAYNNSFQATIGM PFEALYDKCCRSPVCWDEVGEQRLMG ELVQSTN+AIQ
Sbjct: 977  DSHLHLMEFAYNNSFQATIGMAPFEALYDKCCRSPVCWDEVGEQRLMGPELVQSTNEAIQ 1036

Query: 181  KIRSRM 187
            KIRSRM
Sbjct: 1037 KIRSRM 1042

[Close]

BLAST of Cmc08g0224981 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.1e-24
Identity = 53/148 (35.81%), Postives = 82/148 (55.41%), Query Frame = 0


Query: 1    MDFITGLPRTVMGFTVIWVVVDRLTKSTLFISGKSTYTDSKWAQLYMSEIVRLHGVPVSI 60
            MDFIT LP +  G+  ++VVVDR +K  + +    + T  + A+++   ++   G P  I
Sbjct: 989  MDFITALPES-SGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEI 1048

Query: 61   VSDRDAYFTSTFWKGLQAAMGMRLDFSKAFHPQIDGQTERLNQVIEDMLRACALEFPGSW 120
            ++D D  FTS  WK         + FS  + PQ DGQTER NQ +E +LR      P +W
Sbjct: 1049 IADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTW 1108

Query: 121  DSHLYLMEFAYNNSFQATIGMTPFEALY 149
              H+ L++ +YNN+  +   MTPFE ++
Sbjct: 1109 VDHISLVQQSYNNAIHSATQMTPFEIVH 1135

[Close]

BLAST of Cmc08g0224981 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.1e-24
Identity = 53/148 (35.81%), Postives = 82/148 (55.41%), Query Frame = 0


Query: 1    MDFITGLPRTVMGFTVIWVVVDRLTKSTLFISGKSTYTDSKWAQLYMSEIVRLHGVPVSI 60
            MDFIT LP +  G+  ++VVVDR +K  + +    + T  + A+++   ++   G P  I
Sbjct: 989  MDFITALPES-SGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEI 1048

Query: 61   VSDRDAYFTSTFWKGLQAAMGMRLDFSKAFHPQIDGQTERLNQVIEDMLRACALEFPGSW 120
            ++D D  FTS  WK         + FS  + PQ DGQTER NQ +E +LR      P +W
Sbjct: 1049 IADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTW 1108

Query: 121  DSHLYLMEFAYNNSFQATIGMTPFEALY 149
              H+ L++ +YNN+  +   MTPFE ++
Sbjct: 1109 VDHISLVQQSYNNAIHSATQMTPFEIVH 1135

[Close]

BLAST of Cmc08g0224981 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.1e-24
Identity = 53/148 (35.81%), Postives = 82/148 (55.41%), Query Frame = 0


Query: 1    MDFITGLPRTVMGFTVIWVVVDRLTKSTLFISGKSTYTDSKWAQLYMSEIVRLHGVPVSI 60
            MDFIT LP +  G+  ++VVVDR +K  + +    + T  + A+++   ++   G P  I
Sbjct: 989  MDFITALPES-SGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEI 1048

Query: 61   VSDRDAYFTSTFWKGLQAAMGMRLDFSKAFHPQIDGQTERLNQVIEDMLRACALEFPGSW 120
            ++D D  FTS  WK         + FS  + PQ DGQTER NQ +E +LR      P +W
Sbjct: 1049 IADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTW 1108

Query: 121  DSHLYLMEFAYNNSFQATIGMTPFEALY 149
              H+ L++ +YNN+  +   MTPFE ++
Sbjct: 1109 VDHISLVQQSYNNAIHSATQMTPFEIVH 1135

[Close]

BLAST of Cmc08g0224981 vs. ExPASy Swiss-Prot
Match: P0CT35 (Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-2 PE=3 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.1e-24
Identity = 53/148 (35.81%), Postives = 82/148 (55.41%), Query Frame = 0


Query: 1    MDFITGLPRTVMGFTVIWVVVDRLTKSTLFISGKSTYTDSKWAQLYMSEIVRLHGVPVSI 60
            MDFIT LP +  G+  ++VVVDR +K  + +    + T  + A+++   ++   G P  I
Sbjct: 989  MDFITALPES-SGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEI 1048

Query: 61   VSDRDAYFTSTFWKGLQAAMGMRLDFSKAFHPQIDGQTERLNQVIEDMLRACALEFPGSW 120
            ++D D  FTS  WK         + FS  + PQ DGQTER NQ +E +LR      P +W
Sbjct: 1049 IADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTW 1108

Query: 121  DSHLYLMEFAYNNSFQATIGMTPFEALY 149
              H+ L++ +YNN+  +   MTPFE ++
Sbjct: 1109 VDHISLVQQSYNNAIHSATQMTPFEIVH 1135

[Close]

BLAST of Cmc08g0224981 vs. ExPASy Swiss-Prot
Match: P0CT36 (Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-3 PE=1 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.1e-24
Identity = 53/148 (35.81%), Postives = 82/148 (55.41%), Query Frame = 0


Query: 1    MDFITGLPRTVMGFTVIWVVVDRLTKSTLFISGKSTYTDSKWAQLYMSEIVRLHGVPVSI 60
            MDFIT LP +  G+  ++VVVDR +K  + +    + T  + A+++   ++   G P  I
Sbjct: 989  MDFITALPES-SGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEI 1048

Query: 61   VSDRDAYFTSTFWKGLQAAMGMRLDFSKAFHPQIDGQTERLNQVIEDMLRACALEFPGSW 120
            ++D D  FTS  WK         + FS  + PQ DGQTER NQ +E +LR      P +W
Sbjct: 1049 IADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTW 1108

Query: 121  DSHLYLMEFAYNNSFQATIGMTPFEALY 149
              H+ L++ +YNN+  +   MTPFE ++
Sbjct: 1109 VDHISLVQQSYNNAIHSATQMTPFEIVH 1135

[Close]

BLAST of Cmc08g0224981 vs. ExPASy TrEMBL
Match: A0A5A7TV75 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4559G00260 PE=4 SV=1)

HSP 1 Score: 375.2 bits (962), Expect = 1.6e-100
Identity = 180/181 (99.45%), Postives = 181/181 (100.00%), Query Frame = 0


Query: 5   TGLPRTVMGFTVIWVVVDRLTKSTLFISGKSTYTDSKWAQLYMSEIVRLHGVPVSIVSDR 64
           +GLPRTVMGFTVIWVVVDRLTKSTLFISGKSTYTDSKWAQLYMSEIVRLHGVPVSIVSDR
Sbjct: 801 SGLPRTVMGFTVIWVVVDRLTKSTLFISGKSTYTDSKWAQLYMSEIVRLHGVPVSIVSDR 860

Query: 65  DAYFTSTFWKGLQAAMGMRLDFSKAFHPQIDGQTERLNQVIEDMLRACALEFPGSWDSHL 124
           DAYFTSTFWKGLQAAMGMRLDFSKAFHPQIDGQTERLNQVIEDMLRACALEFPGSWDSHL
Sbjct: 861 DAYFTSTFWKGLQAAMGMRLDFSKAFHPQIDGQTERLNQVIEDMLRACALEFPGSWDSHL 920

Query: 125 YLMEFAYNNSFQATIGMTPFEALYDKCCRSPVCWDEVGEQRLMGSELVQSTNKAIQKIRS 184
           YLMEFAYNNSFQATIGMTPFEALYDKCCRSPVCWDEVGEQRLMGSELVQSTNKAIQKIRS
Sbjct: 921 YLMEFAYNNSFQATIGMTPFEALYDKCCRSPVCWDEVGEQRLMGSELVQSTNKAIQKIRS 980

Query: 185 R 186
           R
Sbjct: 981 R 981

[Close]

BLAST of Cmc08g0224981 vs. ExPASy TrEMBL
Match: A0A5A7TDB5 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41502G00010 PE=4 SV=1)

HSP 1 Score: 346.3 bits (887), Expect = 8.0e-92
Identity = 165/186 (88.71%), Postives = 172/186 (92.47%), Query Frame = 0


Query: 1   MDFITGLPRTVMGFTVIWVVVDRLTKSTLFISGKSTYTDSKWAQLYMSEIVRLHGVPVSI 60
           MDFITGLPRT+ GFTVIWVVVDRLTKS  F+ GKSTYT SKWAQLYMSEIVRLHGVPVSI
Sbjct: 1   MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI 60

Query: 61  VSDRDAYFTSTFWKGLQAAMGMRLDFSKAFHPQIDGQTERLNQVIEDMLRACALEFPGSW 120
           VSDRDA FTS FWKGLQ AMG RLDFS AFHPQ DGQTERLNQV+EDMLRACALEFPGSW
Sbjct: 61  VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 120

Query: 121 DSHLYLMEFAYNNSFQATIGMTPFEALYDKCCRSPVCWDEVGEQRLMGSELVQSTNKAIQ 180
           DSHL+LMEFAYNNS+QATIGM PFEALY KCCRSPVCWDEVGEQRLMG ELVQSTN+A+Q
Sbjct: 121 DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWDEVGEQRLMGPELVQSTNEAVQ 180

Query: 181 KIRSRM 187
           KIRSRM
Sbjct: 181 KIRSRM 186

[Close]

BLAST of Cmc08g0224981 vs. ExPASy TrEMBL
Match: A0A5A7V223 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold3980G00010 PE=4 SV=1)

HSP 1 Score: 345.9 bits (886), Expect = 1.1e-91
Identity = 165/186 (88.71%), Postives = 172/186 (92.47%), Query Frame = 0


Query: 1    MDFITGLPRTVMGFTVIWVVVDRLTKSTLFISGKSTYTDSKWAQLYMSEIVRLHGVPVSI 60
            MDFITGLPRT+ GFTVIWVVVDRLTKS  F+ GKSTYT SKWAQLYMSEIVRLHGVPVSI
Sbjct: 1258 MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI 1317

Query: 61   VSDRDAYFTSTFWKGLQAAMGMRLDFSKAFHPQIDGQTERLNQVIEDMLRACALEFPGSW 120
            VSDRDA FTS FWKGLQ AMG RLDFS AFHPQ DGQTER+NQV+EDMLRACALEFPGSW
Sbjct: 1318 VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERMNQVLEDMLRACALEFPGSW 1377

Query: 121  DSHLYLMEFAYNNSFQATIGMTPFEALYDKCCRSPVCWDEVGEQRLMGSELVQSTNKAIQ 180
            DSHL+LMEFAYNNS+QATIGM PFEALYDKCCRSPVCW EVGEQRLMG ELVQSTN+AIQ
Sbjct: 1378 DSHLHLMEFAYNNSYQATIGMAPFEALYDKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQ 1437

Query: 181  KIRSRM 187
            KIRSRM
Sbjct: 1438 KIRSRM 1443

[Close]

BLAST of Cmc08g0224981 vs. ExPASy TrEMBL
Match: A0A5A7VDP3 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1536G00010 PE=4 SV=1)

HSP 1 Score: 344.7 bits (883), Expect = 2.3e-91
Identity = 165/186 (88.71%), Postives = 172/186 (92.47%), Query Frame = 0


Query: 1   MDFITGLPRTVMGFTVIWVVVDRLTKSTLFISGKSTYTDSKWAQLYMSEIVRLHGVPVSI 60
           MDFITGLPRT+ GFTVIWVVVDRLTKS  F+ GKSTYT SKWAQLYMSEIVRLHGVPVSI
Sbjct: 272 MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI 331

Query: 61  VSDRDAYFTSTFWKGLQAAMGMRLDFSKAFHPQIDGQTERLNQVIEDMLRACALEFPGSW 120
           VSDRDA FTS FWKGLQ AMG RLDFS AFHPQ DGQTERLNQV+EDMLRACALEFPGSW
Sbjct: 332 VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 391

Query: 121 DSHLYLMEFAYNNSFQATIGMTPFEALYDKCCRSPVCWDEVGEQRLMGSELVQSTNKAIQ 180
           DSHL+LMEFAYNNS+QATIGMTPFEALY +CCRSPVCW EVGEQRLMG ELVQSTN+AIQ
Sbjct: 392 DSHLHLMEFAYNNSYQATIGMTPFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTNEAIQ 451

Query: 181 KIRSRM 187
           KIRSRM
Sbjct: 452 KIRSRM 457

[Close]

BLAST of Cmc08g0224981 vs. ExPASy TrEMBL
Match: A0A5D3CKD9 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G001800 PE=4 SV=1)

HSP 1 Score: 344.4 bits (882), Expect = 3.1e-91
Identity = 165/186 (88.71%), Postives = 173/186 (93.01%), Query Frame = 0


Query: 1    MDFITGLPRTVMGFTVIWVVVDRLTKSTLFISGKSTYTDSKWAQLYMSEIVRLHGVPVSI 60
            MDFITGLP+T+ GFTVIWVVVDRLTKST FI GKSTYT SKWAQLYMSEIVRLHGVPVSI
Sbjct: 857  MDFITGLPKTLRGFTVIWVVVDRLTKSTHFIPGKSTYTASKWAQLYMSEIVRLHGVPVSI 916

Query: 61   VSDRDAYFTSTFWKGLQAAMGMRLDFSKAFHPQIDGQTERLNQVIEDMLRACALEFPGSW 120
            VSDRDA FTS FWKG+QAAMG RLDFS  FHP+ DGQTERLNQV+E+MLRACALEF GSW
Sbjct: 917  VSDRDARFTSKFWKGIQAAMGTRLDFSTTFHPKTDGQTERLNQVLENMLRACALEFQGSW 976

Query: 121  DSHLYLMEFAYNNSFQATIGMTPFEALYDKCCRSPVCWDEVGEQRLMGSELVQSTNKAIQ 180
            DSHL+LMEFAYNNSFQATIGM PFEALYDKCCRSPVCWDEVGEQRLMG ELVQSTN+AIQ
Sbjct: 977  DSHLHLMEFAYNNSFQATIGMAPFEALYDKCCRSPVCWDEVGEQRLMGPELVQSTNEAIQ 1036

Query: 181  KIRSRM 187
            KIRSRM
Sbjct: 1037 KIRSRM 1042

The following BLAST results are available for this feature:

BLAST of Cmc08g0224981 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0045421.1	3.3e-100	99.45	pol protein [Cucumis melo var. makuwa] >TYK04273.1 pol protein [Cucumis melo var...	[more]
KAA0041424.1	1.7e-91	88.71	pol protein [Cucumis melo var. makuwa]	[more]
KAA0061618.1	2.2e-91	88.71	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0064005.1	4.8e-91	88.71	pol protein [Cucumis melo var. makuwa]	[more]
KAA0054359.1	6.3e-91	88.71	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK12397.1 ty3-gyp...	[more]

BLAST of Cmc08g0224981 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9UR07	1.1e-24	35.81	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT41	1.1e-24	35.81	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	1.1e-24	35.81	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT35	1.1e-24	35.81	Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT36	1.1e-24	35.81	Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Cmc08g0224981 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TV75	1.6e-100	99.45	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4559G00260 P...	[more]
A0A5A7TDB5	8.0e-92	88.71	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41502G00010 ...	[more]
A0A5A7V223	1.1e-91	88.71	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold39...	[more]
A0A5A7VDP3	2.3e-91	88.71	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1536G00010 P...	[more]
A0A5D3CKD9	3.1e-91	88.71	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Cmc08g0224981 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..186 e-value: 7.7E-40 score: 138.3
None	No IPR available	PANTHER	PTHR45835	YALI0A06105P	coord: 1..145
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 1..151 score: 17.843845
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 1..149

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0224981.1	Cmc08g0224981.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0043227	membrane-bounded organelle
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding