Cmc08g0224881 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0224881
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr08: 15314132 .. 15315189 (+)
RNA-Seq Expression	Cmc08g0224881
Synteny	Cmc08g0224881

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGCCGATTGGACCAATTGGAGTTGGAGCGTGGGATTTCTCGACTTAAAGGAAATTATTGCAACATTGATCTTGGGTAAGTTGCTTCAAACGACTCTTAGACTTCTTTTCCATGAAAGTTAGGTTATTAATTGTTGTTCCTAACCATTTATGGCCTCGCTGCTTGGAAAGCGCATTCTCTTGCTGTTAGAGTTCGATCGAGCAAATCTCCAGGTAAGAGATTTCTACTACTAACTCTACGACTTGAATCATGAGACCGCATGCATTCCTAGTTATGCACTTGAGGACTAAACTGCATAACAATATGTTAAATATTGAGGGCATGATGTGACTGTTGATGTGAATTATTATGATGACATGGTATGATGTGTTGACGGCTGGTTATGACTTTATGTTTGGTTATTGTGATGAGATGTGATATGATGATTAGACTGATATGATTACATGATGATGTTATGTATATATATGCTATGGTAGGGTACCTGTTAGCTTAGCCTATTAGAGTCGTACCTACATGGGTGTCCTTCGAGATCACCACCGATTTAGGACTGCGTAGTCCGACGGGACGCCAGTCTAGCATGGATATAGATATGATTTGAGTGATTCGACGGGATCCTCGCAGCCCGATTGTCTTAGTGCTTCATCTGGGTTCGCTACAGACCAGTACGTCCTAGATGCTCCCCCGGGACACCGAAGACCAGATTTTCGTTCCTACGGGAGCGCATGTTGCACGTGTTCGAGAACGTGCCAGTTATTGGGTACCATTTTCAAGACTCTAATAGGAAGTTAACAAGCACCTAATGGGACTAGTAGTGGGTCCCCTACTGAGTATTTTATACTCACTCTCTCCATGTCATGTTTTTCAGGTAGAGGCCAAGGTAAGGGCAAGGACAAGCTGGCGAGCGACCAGAAGTGACCGTGGTGAGTCATAGGGATTTCTGCTTTCGCTTACACCCCGTTTTAAACATTTAGTACTTGAGTTTTTATTTTTTTTCTTTATTTACTATTTCGTTTCTTTAAAAGTAGATAGAGCCCGAGTAGCATATGTGTGAGATGTGT

mRNA sequence

GGGCCGATTGGACCAATTGGAGTTGGAGCGTGGGATTTCTCGACTTAAAGGAAATTATTGCAACATTGATCTTGGCGCATTCTCTTGCTGTTAGAGTTCGATCGAGCAAATCTCCAGGGTACCTGTTAGCTTAGCCTATTAGAGTCGTACCTACATGGGTGTCCTTCGAGATCACCACCGATTTAGGACTGCGTAGTCCGACGGGACGCCAGTCTAGCATGGATATAGATATGATTTGAGTGATTCGACGGGATCCTCGCAGCCCGATTGTCTTAGTGCTTCATCTGGGTTCGCTACAGACCAGTACGTCCTAGATGCTCCCCCGGGACACCGAAGACCAGATTTTCGTTCCTACGGGAGCGCATGTTGCACGTGTTCGAGAACGTGCCAGTTATTGGGTAGAGGCCAAGGTAAGGGCAAGGACAAGCTGGCGAGCGACCAGAAGTGACCGTGGTGAGTCATAGGGATTTCTGCTTTCGCTTACACCCCGTTTTAAACATTTAGTACTTGAGTTTTTATTTTTTTTCTTTATTTACTATTTCGTTTCTTTAAAAGTAGATAGAGCCCGAGTAGCATATGTGTGAGATGTGT

Coding sequence (CDS)

ATGCTCCCCCGGGACACCGAAGACCAGATTTTCGTTCCTACGGGAGCGCATGTTGCACGTGTTCGAGAACGTGCCAGTTATTGGGTAGAGGCCAAGGTAAGGGCAAGGACAAGCTGGCGAGCGACCAGAAGTGACCGTGGTGAGTCATAG

Protein sequence

MLPRDTEDQIFVPTGAHVARVRERASYWVEAKVRARTSWRATRSDRGES

Homology

[Close]

BLAST of Cmc08g0224881 vs. NCBI nr
Match: KAA0043501.1 (hypothetical protein E6C27_scaffold43056G00010 [Cucumis melo var. makuwa] >TYK01138.1 hypothetical protein E5676_scaffold109G00070 [Cucumis melo var. makuwa])

HSP 1 Score: 86.7 bits (213), Expect = 6.2e-14
Identity = 41/47 (87.23%), Postives = 45/47 (95.74%), Query Frame = 0


Query: 2  LPRDTEDQIFVPTGAHVARVRERASYWVEAKVRARTSWRATRSDRGE 49
          +PRDTEDQI+VPTGAHVARVRERA  WVEA+VRA+TSWRATRSDRGE
Sbjct: 21 VPRDTEDQIYVPTGAHVARVRERARDWVEAEVRAKTSWRATRSDRGE 67

[Close]

BLAST of Cmc08g0224881 vs. NCBI nr
Match: TYK26968.1 (hypothetical protein E5676_scaffold322G00310 [Cucumis melo var. makuwa])

HSP 1 Score: 85.9 bits (211), Expect = 1.1e-13
Identity = 41/47 (87.23%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 2  LPRDTEDQIFVPTGAHVARVRERASYWVEAKVRARTSWRATRSDRGE 49
          +PRDTEDQIFVPTGAHVARVRERA  WVEA+VRA+ SWRATRSDRGE
Sbjct: 17 VPRDTEDQIFVPTGAHVARVRERARDWVEAEVRAKASWRATRSDRGE 63

[Close]

BLAST of Cmc08g0224881 vs. NCBI nr
Match: TYK02209.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 85.9 bits (211), Expect = 1.1e-13
Identity = 41/48 (85.42%), Postives = 44/48 (91.67%), Query Frame = 0


Query: 1   MLPRDTEDQIFVPTGAHVARVRERASYWVEAKVRARTSWRATRSDRGE 49
           +LPRDTEDQIFVPTGAHVARVRERA  WVEA+ RA+ SWRATRSDRGE
Sbjct: 232 VLPRDTEDQIFVPTGAHVARVRERARDWVEAEARAKASWRATRSDRGE 279

[Close]

BLAST of Cmc08g0224881 vs. NCBI nr
Match: KAA0063132.1 (hypothetical protein E6C27_scaffold381G00060 [Cucumis melo var. makuwa] >TYK27508.1 hypothetical protein E5676_scaffold1213G00050 [Cucumis melo var. makuwa])

HSP 1 Score: 85.1 bits (209), Expect = 1.8e-13
Identity = 42/46 (91.30%), Postives = 42/46 (91.30%), Query Frame = 0


Query: 3  PRDTEDQIFVPTGAHVARVRERASYWVEAKVRARTSWRATRSDRGE 49
          PRDTEDQI VPTGAHVARVRE ASYWVEA VRAR SWRATRSDRGE
Sbjct: 4  PRDTEDQISVPTGAHVARVRECASYWVEAGVRARASWRATRSDRGE 49

[Close]

BLAST of Cmc08g0224881 vs. NCBI nr
Match: TYK05230.1 (hypothetical protein E5676_scaffold108G00370 [Cucumis melo var. makuwa])

HSP 1 Score: 85.1 bits (209), Expect = 1.8e-13
Identity = 41/48 (85.42%), Postives = 42/48 (87.50%), Query Frame = 0


Query: 1   MLPRDTEDQIFVPTGAHVARVRERASYWVEAKVRARTSWRATRSDRGE 49
           +LPRDTEDQIFVPTGAHVARV ERA YWVEAKV  R SWR TRSDRGE
Sbjct: 123 VLPRDTEDQIFVPTGAHVARVWERARYWVEAKVGVRASWRVTRSDRGE 170

[Close]

BLAST of Cmc08g0224881 vs. ExPASy TrEMBL
Match: A0A5D3BQ05 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold109G00070 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 3.0e-14
Identity = 41/47 (87.23%), Postives = 45/47 (95.74%), Query Frame = 0


Query: 2  LPRDTEDQIFVPTGAHVARVRERASYWVEAKVRARTSWRATRSDRGE 49
          +PRDTEDQI+VPTGAHVARVRERA  WVEA+VRA+TSWRATRSDRGE
Sbjct: 21 VPRDTEDQIYVPTGAHVARVRERARDWVEAEVRAKTSWRATRSDRGE 67

[Close]

BLAST of Cmc08g0224881 vs. ExPASy TrEMBL
Match: A0A5D3DTU1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold322G00310 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 5.2e-14
Identity = 41/47 (87.23%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 2  LPRDTEDQIFVPTGAHVARVRERASYWVEAKVRARTSWRATRSDRGE 49
          +PRDTEDQIFVPTGAHVARVRERA  WVEA+VRA+ SWRATRSDRGE
Sbjct: 17 VPRDTEDQIFVPTGAHVARVRERARDWVEAEVRAKASWRATRSDRGE 63

[Close]

BLAST of Cmc08g0224881 vs. ExPASy TrEMBL
Match: A0A5D3BVU2 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2454G00140 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 5.2e-14
Identity = 41/48 (85.42%), Postives = 44/48 (91.67%), Query Frame = 0


Query: 1   MLPRDTEDQIFVPTGAHVARVRERASYWVEAKVRARTSWRATRSDRGE 49
           +LPRDTEDQIFVPTGAHVARVRERA  WVEA+ RA+ SWRATRSDRGE
Sbjct: 232 VLPRDTEDQIFVPTGAHVARVRERARDWVEAEARAKASWRATRSDRGE 279

[Close]

BLAST of Cmc08g0224881 vs. ExPASy TrEMBL
Match: A0A5D3DVJ6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1213G00050 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 8.8e-14
Identity = 42/46 (91.30%), Postives = 42/46 (91.30%), Query Frame = 0


Query: 3  PRDTEDQIFVPTGAHVARVRERASYWVEAKVRARTSWRATRSDRGE 49
          PRDTEDQI VPTGAHVARVRE ASYWVEA VRAR SWRATRSDRGE
Sbjct: 4  PRDTEDQISVPTGAHVARVRECASYWVEAGVRARASWRATRSDRGE 49

[Close]

BLAST of Cmc08g0224881 vs. ExPASy TrEMBL
Match: A0A5D3C1J3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G00370 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 8.8e-14
Identity = 41/48 (85.42%), Postives = 42/48 (87.50%), Query Frame = 0


Query: 1   MLPRDTEDQIFVPTGAHVARVRERASYWVEAKVRARTSWRATRSDRGE 49
           +LPRDTEDQIFVPTGAHVARV ERA YWVEAKV  R SWR TRSDRGE
Sbjct: 123 VLPRDTEDQIFVPTGAHVARVWERARYWVEAKVGVRASWRVTRSDRGE 170

The following BLAST results are available for this feature:

BLAST of Cmc08g0224881 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0043501.1	6.2e-14	87.23	hypothetical protein E6C27_scaffold43056G00010 [Cucumis melo var. makuwa] >TYK01...	[more]
TYK26968.1	1.1e-13	87.23	hypothetical protein E5676_scaffold322G00310 [Cucumis melo var. makuwa]	[more]
TYK02209.1	1.1e-13	85.42	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0063132.1	1.8e-13	91.30	hypothetical protein E6C27_scaffold381G00060 [Cucumis melo var. makuwa] >TYK2750...	[more]
TYK05230.1	1.8e-13	85.42	hypothetical protein E5676_scaffold108G00370 [Cucumis melo var. makuwa]	[more]

BLAST of Cmc08g0224881 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc08g0224881 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BQ05	3.0e-14	87.23	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DTU1	5.2e-14	87.23	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BVU2	5.2e-14	85.42	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2454G001...	[more]
A0A5D3DVJ6	8.8e-14	91.30	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3C1J3	8.8e-14	85.42	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Cmc08g0224881 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0224881.1	Cmc08g0224881.1	mRNA