Cmc08g0224721 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0224721
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase Ty1/copia-type domain-containing protein
Location	CMiso1.1chr08: 15106909 .. 15107640 (-)
RNA-Seq Expression	Cmc08g0224721
Synteny	Cmc08g0224721

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAATCCCTGAAGGATTTAAGATACTTGAATCATATAATTCAAACTCTAGAGAATTATGTTCAATCAAATTACAAAGATCATTATATGGATTGAAACAATCAGAACGAATGTGGTACAATCGCTTAAGTGAATATTTATTGAAAGAAGGTTATCAAAATAATCCAATTTGTCCATGTGTTTTTATTAAGAAATCACAATCAGGATTTGCGATTATAGTTGTATATATTGATGATTTAAATATAATTGGAACTCCTGAAGAGCTTTCAAAGACAATAGAATATCTCAAAAAGGAATTTGAAATGAAAGATCTTGGTAAGACAAAATTTTGTCTTGGCTTACAAATCGAGCATTTAGCCGATGGAATTTTTATTCATCAATCGACATATACAGAAAAGATTTTAAAAAGATTATACATGGACAAAGCACACCTATTGAACATTCCAATGGTGGTTCGACCACTAGATGTAAGAAAGGATATCTTTCGACCTCGAAAAGATAATGATGAATTACTTGGTCCTGAAGTACCGTACCTTAGTGCAATAGGTGCACTAATGTATCTTGCTAATAACACAAGACCAGATATAGCATTTTCAGTAAATTTGTTAGCAAAATATAGTTCTTCTCCAACAATAAAAGACATTGGAATGGAGTTAAGCATGTACTTCGTTATCTTCGAGGGACAATTGATATGGGTTTGTTTTATTCAAATAAATCAAACTTTGATCTAG

mRNA sequence

ATGAAAATCCCTGAAGGATTTAAGATACTTGAATCATATAATTCAAACTCTAGAGAATTATGTTCAATCAAATTACAAAGATCATTATATGGATTGAAACAATCAGAACGAATGTGGTACAATCGCTTAAGTGAATATTTATTGAAAGAAGGTTATCAAAATAATCCAATTTGTCCATGTGTTTTTATTAAGAAATCACAATCAGGATTTGCGATTATAGTTGTATATATTGATGATTTAAATATAATTGGAACTCCTGAAGAGCTTTCAAAGACAATAGAATATCTCAAAAAGGAATTTGAAATGAAAGATCTTGGTAAGACAAAATTTTGTCTTGGCTTACAAATCGAGCATTTAGCCGATGGAATTTTTATTCATCAATCGACATATACAGAAAAGATTTTAAAAAGATTATACATGGACAAAGCACACCTATTGAACATTCCAATGGTGGTTCGACCACTAGATGTAAGAAAGGATATCTTTCGACCTCGAAAAGATAATGATGAATTACTTGGTCCTGAAGTACCGTACCTTAGTGCAATAGGTGCACTAATGTATCTTGCTAATAACACAAGACCAGATATAGCATTTTCAGTAAATTTGTTAGCAAAATATAGTTCTTCTCCAACAATAAAAGACATTGGAATGGAGTTAAGCATGTACTTCGTTATCTTCGAGGGACAATTGATATGGGTTTGTTTTATTCAAATAAATCAAACTTTGATCTAG

Coding sequence (CDS)

ATGAAAATCCCTGAAGGATTTAAGATACTTGAATCATATAATTCAAACTCTAGAGAATTATGTTCAATCAAATTACAAAGATCATTATATGGATTGAAACAATCAGAACGAATGTGGTACAATCGCTTAAGTGAATATTTATTGAAAGAAGGTTATCAAAATAATCCAATTTGTCCATGTGTTTTTATTAAGAAATCACAATCAGGATTTGCGATTATAGTTGTATATATTGATGATTTAAATATAATTGGAACTCCTGAAGAGCTTTCAAAGACAATAGAATATCTCAAAAAGGAATTTGAAATGAAAGATCTTGGTAAGACAAAATTTTGTCTTGGCTTACAAATCGAGCATTTAGCCGATGGAATTTTTATTCATCAATCGACATATACAGAAAAGATTTTAAAAAGATTATACATGGACAAAGCACACCTATTGAACATTCCAATGGTGGTTCGACCACTAGATGTAAGAAAGGATATCTTTCGACCTCGAAAAGATAATGATGAATTACTTGGTCCTGAAGTACCGTACCTTAGTGCAATAGGTGCACTAATGTATCTTGCTAATAACACAAGACCAGATATAGCATTTTCAGTAAATTTGTTAGCAAAATATAGTTCTTCTCCAACAATAAAAGACATTGGAATGGAGTTAAGCATGTACTTCGTTATCTTCGAGGGACAATTGATATGGGTTTGTTTTATTCAAATAAATCAAACTTTGATCTAG

Protein sequence

MKIPEGFKILESYNSNSRELCSIKLQRSLYGLKQSERMWYNRLSEYLLKEGYQNNPICPCVFIKKSQSGFAIIVVYIDDLNIIGTPEELSKTIEYLKKEFEMKDLGKTKFCLGLQIEHLADGIFIHQSTYTEKILKRLYMDKAHLLNIPMVVRPLDVRKDIFRPRKDNDELLGPEVPYLSAIGALMYLANNTRPDIAFSVNLLAKYSSSPTIKDIGMELSMYFVIFEGQLIWVCFIQINQTLI

Homology

[Close]

BLAST of Cmc08g0224721 vs. NCBI nr
Match: RVW50867.1 (Copia protein [Vitis vinifera])

HSP 1 Score: 345.5 bits (885), Expect = 3.7e-91
Identity = 164/211 (77.73%), Postives = 188/211 (89.10%), Query Frame = 0


Query: 1   MKIPEGFKILESYNSNSRELCSIKLQRSLYGLKQSERMWYNRLSEYLLKEGYQNNPICPC 60
           MKIPEGFK+ ++ N+  R + SIKLQRSLYGLKQS RMWYNRLSEYLLKEGY NNPICPC
Sbjct: 678 MKIPEGFKLPDANNTKPRSMYSIKLQRSLYGLKQSGRMWYNRLSEYLLKEGYVNNPICPC 737

Query: 61  VFIKKSQSGFAIIVVYIDDLNIIGTPEELSKTIEYLKKEFEMKDLGKTKFCLGLQIEHLA 120
           +FIKKS++GFAII VY+DDLN++GTPEEL++T  YLKKEFEMKDLGKTKFCLGLQIEH  
Sbjct: 738 IFIKKSETGFAIIAVYVDDLNLVGTPEELTRTTNYLKKEFEMKDLGKTKFCLGLQIEHFP 797

Query: 121 DGIFIHQSTYTEKILKRLYMDKAHLLNIPMVVRPLDVRKDIFRPRKDNDELLGPEVPYLS 180
           +G+ +HQSTY +K+LKR YMDKAH L+ PMVVR LDV+KD FRP + ++ELLGPEVPYLS
Sbjct: 798 NGVLVHQSTYIKKVLKRFYMDKAHPLSSPMVVRSLDVKKDSFRPCEKDEELLGPEVPYLS 857

Query: 181 AIGALMYLANNTRPDIAFSVNLLAKYSSSPT 212
           AIGALMYLAN TRPDIAFSVNLLAKYSS+PT
Sbjct: 858 AIGALMYLANCTRPDIAFSVNLLAKYSSAPT 888

[Close]

BLAST of Cmc08g0224721 vs. NCBI nr
Match: RVW93168.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 345.1 bits (884), Expect = 4.8e-91
Identity = 164/211 (77.73%), Postives = 188/211 (89.10%), Query Frame = 0


Query: 1   MKIPEGFKILESYNSNSRELCSIKLQRSLYGLKQSERMWYNRLSEYLLKEGYQNNPICPC 60
           MKIPEGFK+ ++ N+  R + SIKLQRSLYGLKQS RMWYNRLSEYLLKEGY NNPICPC
Sbjct: 459 MKIPEGFKLPDANNTKPRSMYSIKLQRSLYGLKQSGRMWYNRLSEYLLKEGYVNNPICPC 518

Query: 61  VFIKKSQSGFAIIVVYIDDLNIIGTPEELSKTIEYLKKEFEMKDLGKTKFCLGLQIEHLA 120
           +FIKKS++GFAII VY+DDLN++GTPEEL++T  YLKKEFEMKDLGKTKFCLGLQIEH  
Sbjct: 519 IFIKKSETGFAIIAVYVDDLNLVGTPEELTRTTNYLKKEFEMKDLGKTKFCLGLQIEHFP 578

Query: 121 DGIFIHQSTYTEKILKRLYMDKAHLLNIPMVVRPLDVRKDIFRPRKDNDELLGPEVPYLS 180
           +G+ +HQSTY +K+LKR YMDKAH L+ PMVVR LDV+KD FRP + ++ELLGPEVPYLS
Sbjct: 579 NGVLVHQSTYIKKVLKRFYMDKAHPLSSPMVVRSLDVKKDPFRPCEKDEELLGPEVPYLS 638

Query: 181 AIGALMYLANNTRPDIAFSVNLLAKYSSSPT 212
           AIGALMYLAN TRPDIAFSVNLLA+YSSSPT
Sbjct: 639 AIGALMYLANCTRPDIAFSVNLLARYSSSPT 669

[Close]

BLAST of Cmc08g0224721 vs. NCBI nr
Match: RVW59049.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 344.0 bits (881), Expect = 1.1e-90
Identity = 163/211 (77.25%), Postives = 188/211 (89.10%), Query Frame = 0


Query: 1   MKIPEGFKILESYNSNSRELCSIKLQRSLYGLKQSERMWYNRLSEYLLKEGYQNNPICPC 60
           MKIPEGFK+ ++ N+  R + SIKLQRSLYGLKQS RMWYNRLSEYLLKEGY NNPICPC
Sbjct: 665 MKIPEGFKLPDANNTKPRSMYSIKLQRSLYGLKQSGRMWYNRLSEYLLKEGYVNNPICPC 724

Query: 61  VFIKKSQSGFAIIVVYIDDLNIIGTPEELSKTIEYLKKEFEMKDLGKTKFCLGLQIEHLA 120
           +FIKKS++GFAII VY+DDLN++GTPEEL++T  YLKKEFEMKDLGKTKFCLGLQIEH  
Sbjct: 725 IFIKKSETGFAIIAVYVDDLNLVGTPEELTRTTNYLKKEFEMKDLGKTKFCLGLQIEHFP 784

Query: 121 DGIFIHQSTYTEKILKRLYMDKAHLLNIPMVVRPLDVRKDIFRPRKDNDELLGPEVPYLS 180
           +G+ +HQSTY +K+LKR YMDKAH L+ PMVVR LDV+KD FRP + ++ELLGPEVPYLS
Sbjct: 785 NGVLVHQSTYIKKVLKRFYMDKAHPLSSPMVVRSLDVKKDPFRPCEKDEELLGPEVPYLS 844

Query: 181 AIGALMYLANNTRPDIAFSVNLLAKYSSSPT 212
           AIGALMYLAN TRPDIAFSVNLLA+YSS+PT
Sbjct: 845 AIGALMYLANCTRPDIAFSVNLLARYSSAPT 875

[Close]

BLAST of Cmc08g0224721 vs. NCBI nr
Match: CAN77974.1 (hypothetical protein VITISV_006175 [Vitis vinifera])

HSP 1 Score: 344.0 bits (881), Expect = 1.1e-90
Identity = 163/211 (77.25%), Postives = 188/211 (89.10%), Query Frame = 0


Query: 1    MKIPEGFKILESYNSNSRELCSIKLQRSLYGLKQSERMWYNRLSEYLLKEGYQNNPICPC 60
            MKIPEGFK+ ++ N+  R + SIKLQRSLYGLKQS RMWYNRLSEYLLKEGY NNPICPC
Sbjct: 1084 MKIPEGFKLPDANNTKPRSMYSIKLQRSLYGLKQSGRMWYNRLSEYLLKEGYVNNPICPC 1143

Query: 61   VFIKKSQSGFAIIVVYIDDLNIIGTPEELSKTIEYLKKEFEMKDLGKTKFCLGLQIEHLA 120
            +FIKKS++GFAII VY+DDLN++GTPEEL++T  YLKKEFEMKDLGKTKFCLGLQIEH  
Sbjct: 1144 IFIKKSETGFAIIAVYVDDLNLVGTPEELTRTTNYLKKEFEMKDLGKTKFCLGLQIEHFP 1203

Query: 121  DGIFIHQSTYTEKILKRLYMDKAHLLNIPMVVRPLDVRKDIFRPRKDNDELLGPEVPYLS 180
            +G+ +HQSTY +K+LKR YMDKAH L+ PMVVR LDV+KD FRP + ++ELLGPEVPYLS
Sbjct: 1204 NGVLVHQSTYIKKVLKRFYMDKAHPLSSPMVVRSLDVKKDPFRPCEXDEELLGPEVPYLS 1263

Query: 181  AIGALMYLANNTRPDIAFSVNLLAKYSSSPT 212
            AIGALMYLAN TRPDIAFSVNLLA+YSS+PT
Sbjct: 1264 AIGALMYLANCTRPDIAFSVNLLARYSSAPT 1294

[Close]

BLAST of Cmc08g0224721 vs. NCBI nr
Match: RVW51051.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 342.8 bits (878), Expect = 2.4e-90
Identity = 163/211 (77.25%), Postives = 187/211 (88.63%), Query Frame = 0


Query: 1   MKIPEGFKILESYNSNSRELCSIKLQRSLYGLKQSERMWYNRLSEYLLKEGYQNNPICPC 60
           MKIPEGFK+ ++ N+  R + SIKLQRSLYGLKQS RMWYNRLSEYLLKEGY NNPICPC
Sbjct: 678 MKIPEGFKLPDANNTKPRSMYSIKLQRSLYGLKQSGRMWYNRLSEYLLKEGYVNNPICPC 737

Query: 61  VFIKKSQSGFAIIVVYIDDLNIIGTPEELSKTIEYLKKEFEMKDLGKTKFCLGLQIEHLA 120
           +FIKK ++GFAII VY+DDLN++GTPEEL++T  YLKKEFEMKDLGKTKFCLGLQIEH  
Sbjct: 738 IFIKKLETGFAIIAVYVDDLNLVGTPEELTRTTNYLKKEFEMKDLGKTKFCLGLQIEHFP 797

Query: 121 DGIFIHQSTYTEKILKRLYMDKAHLLNIPMVVRPLDVRKDIFRPRKDNDELLGPEVPYLS 180
           +G+ +HQSTY +K+LKR YMDKAH L+ PMVVR LDV+KD FRP + ++ELLGPEVPYLS
Sbjct: 798 NGVLVHQSTYIKKVLKRFYMDKAHPLSSPMVVRSLDVKKDPFRPCEKDEELLGPEVPYLS 857

Query: 181 AIGALMYLANNTRPDIAFSVNLLAKYSSSPT 212
           AIGALMYLAN TRPDIAFSVNLLA+YSSSPT
Sbjct: 858 AIGALMYLANCTRPDIAFSVNLLARYSSSPT 888

[Close]

BLAST of Cmc08g0224721 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 7.4e-26
Identity = 73/214 (34.11%), Postives = 123/214 (57.48%), Query Frame = 0


Query: 1    MKIPEGFKILESYNSNSRELCSIKLQRSLYGLKQSERMWYNRLSEYLLKEGYQNNPICPC 60
            M+ PEGF++          +C  KL +SLYGLKQ+ R WY +   ++  + Y      PC
Sbjct: 938  MEQPEGFEVA----GKKHMVC--KLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPC 997

Query: 61   VFIKK-SQSGFAIIVVYIDDLNIIGTPEEL-SKTIEYLKKEFEMKDLGKTKFCLGLQI-- 120
            V+ K+ S++ F I+++Y+DD+ I+G  + L +K    L K F+MKDLG  +  LG++I  
Sbjct: 998  VYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVR 1057

Query: 121  EHLADGIFIHQSTYTEKILKRLYMDKAHLLNIPMVVRPLDVRKDIFRPRKDNDELLGPEV 180
            E  +  +++ Q  Y E++L+R  M  A  ++ P+    L + K +  P    ++    +V
Sbjct: 1058 ERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGH-LKLSKKMC-PTTVEEKGNMAKV 1117

Query: 181  PYLSAIGALMYLANNTRPDIAFSVNLLAKYSSSP 211
            PY SA+G+LMY    TRPDIA +V +++++  +P
Sbjct: 1118 PYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENP 1143

[Close]

BLAST of Cmc08g0224721 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 109.0 bits (271), Expect = 7.6e-23
Identity = 68/215 (31.63%), Postives = 116/215 (53.95%), Query Frame = 0


Query: 1    MKIPEGFKILESYNSNSRELCSIKLQRSLYGLKQSERMWYNRLSEYLLKEGYQNNPICPC 60
            M++P+G       + NS  +C  KL +++YGLKQ+ R W+    + L +  + N+ +  C
Sbjct: 1018 MRLPQGI------SCNSDNVC--KLNKAIYGLKQAARCWFEVFEQALKECEFVNSSVDRC 1077

Query: 61   VFI--KKSQSGFAIIVVYIDDLNI-IGTPEELSKTIEYLKKEFEMKDLGKTKFCLGLQIE 120
            ++I  K + +    +++Y+DD+ I  G    ++    YL ++F M DL + K  +G++IE
Sbjct: 1078 IYILDKGNINENIYVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRIE 1137

Query: 121  HLADGIFIHQSTYTEKILKRLYMDKAHLLNIPMVVRPLDVRKDIFRPRKDNDELLGPE-- 180
               D I++ QS Y +KIL +  M+  + ++ P+             P K N ELL  +  
Sbjct: 1138 MQEDKIYLSQSAYVKKILSKFNMENCNAVSTPL-------------PSKINYELLNSDED 1197

Query: 181  --VPYLSAIGALMYLANNTRPDIAFSVNLLAKYSS 209
               P  S IG LMY+   TRPD+  +VN+L++YSS
Sbjct: 1198 CNTPCRSLIGCLMYIMLCTRPDLTTAVNILSRYSS 1211

[Close]

BLAST of Cmc08g0224721 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 3.6e-20
Identity = 61/189 (32.28%), Postives = 99/189 (52.38%), Query Frame = 0


Query: 24   KLQRSLYGLKQSERMWYNRLSEYLLKEGYQNNPICPCVFIKKSQSGFAIIVVYIDDLNII 83
            KL+++LYGLKQ+ R WY  L  YLL  G+ N+     +F+ +       ++VY+DD+ I 
Sbjct: 1098 KLRKALYGLKQAPRAWYVELRNYLLTIGFVNSVSDTSLFVLQRGKSIVYMLVYVDDILIT 1157

Query: 84   GT-PEELSKTIEYLKKEFEMKDLGKTKFCLGLQIEHLADGIFIHQSTYTEKILKRLYMDK 143
            G  P  L  T++ L + F +KD  +  + LG++ + +  G+ + Q  Y   +L R  M  
Sbjct: 1158 GNDPTLLHNTLDNLSQRFSVKDHEELHYFLGIEAKRVPTGLHLSQRRYILDLLARTNMIT 1217

Query: 144  AHLLNIPMVVRPLDVRKDIFRPRKDNDELLGPEVPYLSAIGALMYLANNTRPDIAFSVNL 203
            A  +  PM   P   +  ++   K  D        Y   +G+L YLA  TRPDI+++VN 
Sbjct: 1218 AKPVTTPMAPSP---KLSLYSGTKLTD-----PTEYRGIVGSLQYLA-FTRPDISYAVNR 1277

Query: 204  LAKYSSSPT 212
            L+++   PT
Sbjct: 1278 LSQFMHMPT 1277

[Close]

BLAST of Cmc08g0224721 vs. ExPASy Swiss-Prot
Match: P25600 (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5A PE=5 SV=2)

HSP 1 Score: 79.7 bits (195), Expect = 5.0e-14
Identity = 54/189 (28.57%), Postives = 91/189 (48.15%), Query Frame = 0


Query: 24  KLQRSLYGLKQSERMWYNRLSEYLLKEGYQNNPICPCVFIKKSQSGFAIIVVYIDDLNII 83
           +L   +YGLKQ+  +W   ++  L K G+  +     ++ + +  G   I VY+DDL + 
Sbjct: 35  ELYGGMYGLKQAPLLWNEHINNTLKKIGFCRHEGEHGLYFRSTSDGPIYIAVYVDDLLVA 94

Query: 84  G-TPEELSKTIEYLKKEFEMKDLGKTKFCLGLQIEHLADG-IFIHQSTYTEKILKRLYMD 143
             +P+   +  + L K + MKDLGK    LGL I   ++G I +    Y  K        
Sbjct: 95  APSPKIYDRVKQELTKLYSMKDLGKVDKFLGLNIHQSSNGDITLSLQDYIAKA-----AS 154

Query: 144 KAHLLNIPMVVRPLDVRKDIFRPRKDNDELLGPEVPYLSAIGALMYLANNTRPDIAFSVN 203
           ++ +    +   PL   K +F     +   L    PY S +G L++ AN  RPDI++ V+
Sbjct: 155 ESEINTFKLTQTPLCNSKPLFETTSPH---LKDITPYQSIVGQLLFCANTGRPDISYPVS 214

Query: 204 LLAKYSSSP 211
           LL+++   P
Sbjct: 215 LLSRFLREP 215

[Close]

BLAST of Cmc08g0224721 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 7.9e-12
Identity = 44/146 (30.14%), Postives = 76/146 (52.05%), Query Frame = 0


Query: 73  IVVYIDDLNIIGTPEE-LSKTIEYLKKEFEMKDLGKTKFCLGLQIEHLADGIFIHQSTYT 132
           +++Y+DD+ + G+    L+  I  L   F MKDLG   + LG+QI+    G+F+ Q+ Y 
Sbjct: 3   LLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYA 62

Query: 133 EKILKRLYMDKAHLLNIPMVVRPLDVRKDIFRPRKDNDELLGPEVPYLSAIGALMYLANN 192
           E+IL    M     ++ P+   PL +   +   +  +         + S +GAL YL   
Sbjct: 63  EQILNNAGMLDCKPMSTPL---PLKLNSSVSTAKYPDPS------DFRSIVGALQYL-TL 122

Query: 193 TRPDIAFSVNLLAKYSSSPTIKDIGM 218
           TRPDI+++VN++ +    PT+ D  +
Sbjct: 123 TRPDISYAVNIVCQRMHEPTLADFDL 138

[Close]

BLAST of Cmc08g0224721 vs. ExPASy TrEMBL
Match: A0A2N9I5S5 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS47934 PE=4 SV=1)

HSP 1 Score: 355.9 bits (912), Expect = 1.3e-94
Identity = 169/213 (79.34%), Postives = 193/213 (90.61%), Query Frame = 0


Query: 1   MKIPEGFKILESYNSNSRELCSIKLQRSLYGLKQSERMWYNRLSEYLLKEGYQNNPICPC 60
           MKIPEG+K+ E+YNS SR + SIKLQRSLYGLKQS RMWYNRLSEYLLKEG++NNPICPC
Sbjct: 355 MKIPEGYKMPEAYNSKSRNMYSIKLQRSLYGLKQSGRMWYNRLSEYLLKEGFENNPICPC 414

Query: 61  VFIKKSQSGFAIIVVYIDDLNIIGTPEELSKTIEYLKKEFEMKDLGKTKFCLGLQIEHLA 120
           VFIKKS+SGFAI+ VY+DDLN++GTPEEL+KT +YLK EFEMKDLGKTKFCLGLQIEHL 
Sbjct: 415 VFIKKSESGFAIVAVYVDDLNLVGTPEELTKTADYLKNEFEMKDLGKTKFCLGLQIEHLP 474

Query: 121 DGIFIHQSTYTEKILKRLYMDKAHLLNIPMVVRPLDVRKDIFRPRKDNDELLGPEVPYLS 180
           DGI IHQSTYTEK+LK  +MDKAH L+ PMVVR LDV+KD FRP++  +E LGPEVPYLS
Sbjct: 475 DGILIHQSTYTEKVLKHFHMDKAHPLSTPMVVRSLDVKKDPFRPQEVGEETLGPEVPYLS 534

Query: 181 AIGALMYLANNTRPDIAFSVNLLAKYSSSPTIK 214
           AIGALMYLAN TRPDIAFSVNLLA+YSS+PT++
Sbjct: 535 AIGALMYLANCTRPDIAFSVNLLARYSSAPTLR 567

[Close]

BLAST of Cmc08g0224721 vs. ExPASy TrEMBL
Match: A0A2N9G9W6 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS24244 PE=4 SV=1)

HSP 1 Score: 355.9 bits (912), Expect = 1.3e-94
Identity = 169/213 (79.34%), Postives = 193/213 (90.61%), Query Frame = 0


Query: 1   MKIPEGFKILESYNSNSRELCSIKLQRSLYGLKQSERMWYNRLSEYLLKEGYQNNPICPC 60
           MKIPEG+K+ E+YNS SR + SIKLQRSLYGLKQS RMWYNRLSEYLLKEG++NNPICPC
Sbjct: 381 MKIPEGYKMPEAYNSKSRNMYSIKLQRSLYGLKQSGRMWYNRLSEYLLKEGFENNPICPC 440

Query: 61  VFIKKSQSGFAIIVVYIDDLNIIGTPEELSKTIEYLKKEFEMKDLGKTKFCLGLQIEHLA 120
           VFIKKS+SGFAI+ VY+DDLN++GTPEEL+KT +YLK EFEMKDLGKTKFCLGLQIEHL 
Sbjct: 441 VFIKKSESGFAIVAVYVDDLNLVGTPEELTKTADYLKNEFEMKDLGKTKFCLGLQIEHLP 500

Query: 121 DGIFIHQSTYTEKILKRLYMDKAHLLNIPMVVRPLDVRKDIFRPRKDNDELLGPEVPYLS 180
           DGI IHQSTYTEK+LK  +MDKAH L+ PMVVR LDV+KD FRP++  +E LGPEVPYLS
Sbjct: 501 DGILIHQSTYTEKVLKHFHMDKAHPLSTPMVVRSLDVKKDPFRPQEVGEETLGPEVPYLS 560

Query: 181 AIGALMYLANNTRPDIAFSVNLLAKYSSSPTIK 214
           AIGALMYLAN TRPDIAFSVNLLA+YSS+PT++
Sbjct: 561 AIGALMYLANCTRPDIAFSVNLLARYSSAPTLR 593

[Close]

BLAST of Cmc08g0224721 vs. ExPASy TrEMBL
Match: A0A2N9G6F8 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS22947 PE=4 SV=1)

HSP 1 Score: 355.9 bits (912), Expect = 1.3e-94
Identity = 169/213 (79.34%), Postives = 193/213 (90.61%), Query Frame = 0


Query: 1   MKIPEGFKILESYNSNSRELCSIKLQRSLYGLKQSERMWYNRLSEYLLKEGYQNNPICPC 60
           MKIPEG+K+ E+YNS SR + SIKLQRSLYGLKQS RMWYNRLSEYLLKEG++NNPICPC
Sbjct: 355 MKIPEGYKMPEAYNSKSRNMYSIKLQRSLYGLKQSGRMWYNRLSEYLLKEGFENNPICPC 414

Query: 61  VFIKKSQSGFAIIVVYIDDLNIIGTPEELSKTIEYLKKEFEMKDLGKTKFCLGLQIEHLA 120
           VFIKKS+SGFAI+ VY+DDLN++GTPEEL+KT +YLK EFEMKDLGKTKFCLGLQIEHL 
Sbjct: 415 VFIKKSESGFAIVAVYVDDLNLVGTPEELTKTADYLKNEFEMKDLGKTKFCLGLQIEHLP 474

Query: 121 DGIFIHQSTYTEKILKRLYMDKAHLLNIPMVVRPLDVRKDIFRPRKDNDELLGPEVPYLS 180
           DGI IHQSTYTEK+LK  +MDKAH L+ PMVVR LDV+KD FRP++  +E LGPEVPYLS
Sbjct: 475 DGILIHQSTYTEKVLKHFHMDKAHPLSTPMVVRSLDVKKDPFRPQEVGEETLGPEVPYLS 534

Query: 181 AIGALMYLANNTRPDIAFSVNLLAKYSSSPTIK 214
           AIGALMYLAN TRPDIAFSVNLLA+YSS+PT++
Sbjct: 535 AIGALMYLANCTRPDIAFSVNLLARYSSAPTLR 567

[Close]

BLAST of Cmc08g0224721 vs. ExPASy TrEMBL
Match: A0A2N9GX57 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS31841 PE=4 SV=1)

HSP 1 Score: 355.9 bits (912), Expect = 1.3e-94
Identity = 169/213 (79.34%), Postives = 193/213 (90.61%), Query Frame = 0


Query: 1   MKIPEGFKILESYNSNSRELCSIKLQRSLYGLKQSERMWYNRLSEYLLKEGYQNNPICPC 60
           MKIPEG+K+ E+YNS SR + SIKLQRSLYGLKQS RMWYNRLSEYLLKEG++NNPICPC
Sbjct: 381 MKIPEGYKMPEAYNSKSRNMYSIKLQRSLYGLKQSGRMWYNRLSEYLLKEGFENNPICPC 440

Query: 61  VFIKKSQSGFAIIVVYIDDLNIIGTPEELSKTIEYLKKEFEMKDLGKTKFCLGLQIEHLA 120
           VFIKKS+SGFAI+ VY+DDLN++GTPEEL+KT +YLK EFEMKDLGKTKFCLGLQIEHL 
Sbjct: 441 VFIKKSESGFAIVAVYVDDLNLVGTPEELTKTADYLKNEFEMKDLGKTKFCLGLQIEHLP 500

Query: 121 DGIFIHQSTYTEKILKRLYMDKAHLLNIPMVVRPLDVRKDIFRPRKDNDELLGPEVPYLS 180
           DGI IHQSTYTEK+LK  +MDKAH L+ PMVVR LDV+KD FRP++  +E LGPEVPYLS
Sbjct: 501 DGILIHQSTYTEKVLKHFHMDKAHPLSTPMVVRSLDVKKDPFRPQEVGEETLGPEVPYLS 560

Query: 181 AIGALMYLANNTRPDIAFSVNLLAKYSSSPTIK 214
           AIGALMYLAN TRPDIAFSVNLLA+YSS+PT++
Sbjct: 561 AIGALMYLANCTRPDIAFSVNLLARYSSAPTLR 593

[Close]

BLAST of Cmc08g0224721 vs. ExPASy TrEMBL
Match: A0A2N9HZE8 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS45337 PE=4 SV=1)

HSP 1 Score: 355.9 bits (912), Expect = 1.3e-94
Identity = 169/213 (79.34%), Postives = 193/213 (90.61%), Query Frame = 0


Query: 1   MKIPEGFKILESYNSNSRELCSIKLQRSLYGLKQSERMWYNRLSEYLLKEGYQNNPICPC 60
           MKIPEG+K+ E+YNS SR + SIKLQRSLYGLKQS RMWYNRLSEYLLKEG++NNPICPC
Sbjct: 381 MKIPEGYKMPEAYNSKSRNMYSIKLQRSLYGLKQSGRMWYNRLSEYLLKEGFENNPICPC 440

Query: 61  VFIKKSQSGFAIIVVYIDDLNIIGTPEELSKTIEYLKKEFEMKDLGKTKFCLGLQIEHLA 120
           VFIKKS+SGFAI+ VY+DDLN++GTPEEL+KT +YLK EFEMKDLGKTKFCLGLQIEHL 
Sbjct: 441 VFIKKSESGFAIVAVYVDDLNLVGTPEELTKTADYLKNEFEMKDLGKTKFCLGLQIEHLP 500

Query: 121 DGIFIHQSTYTEKILKRLYMDKAHLLNIPMVVRPLDVRKDIFRPRKDNDELLGPEVPYLS 180
           DGI IHQSTYTEK+LK  +MDKAH L+ PMVVR LDV+KD FRP++  +E LGPEVPYLS
Sbjct: 501 DGILIHQSTYTEKVLKHFHMDKAHPLSTPMVVRSLDVKKDPFRPQEVGEETLGPEVPYLS 560

Query: 181 AIGALMYLANNTRPDIAFSVNLLAKYSSSPTIK 214
           AIGALMYLAN TRPDIAFSVNLLA+YSS+PT++
Sbjct: 561 AIGALMYLANCTRPDIAFSVNLLARYSSAPTLR 593

[Close]

BLAST of Cmc08g0224721 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 90.1 bits (222), Expect = 2.6e-18
Identity = 67/213 (31.46%), Postives = 107/213 (50.23%), Query Frame = 0


Query: 1   MKIPEGFKILESYNSNSRELCSIKLQRSLYGLKQSERMWYNRLSEYLLKEGYQNNPICPC 60
           MK+P G+   +  +     +C +K  +S+YGLKQ+ R W+ + S  L+  G+  +     
Sbjct: 210 MKLPPGYAARQGDSLPPNAVCYLK--KSIYGLKQASRQWFLKFSVTLIGFGFVQSHSDHT 269

Query: 61  VFIKKSQSGFAIIVVYIDDLNIIGTPE-ELSKTIEYLKKEFEMKDLGKTKFCLGLQIEHL 120
            F+K + + F  ++VY+DD+ I    +  + +    LK  F+++DLG  K+ LGL+I   
Sbjct: 270 YFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIARS 329

Query: 121 ADGIFIHQSTYTEKILKRLYMDKAHLLNIPMVVRPLDVRKDIFRPRKDNDELLGPEVPYL 180
           A GI I Q  Y   +L     D+  LL       P+D     F      D +      Y 
Sbjct: 330 AAGINICQRKYALDLL-----DETGLLGCKPSSVPMD-PSVTFSAHSGGDFV--DAKAYR 389

Query: 181 SAIGALMYLANNTRPDIAFSVNLLAKYSSSPTI 213
             IG LMYL   TR DI+F+VN L+++S +P +
Sbjct: 390 RLIGRLMYL-QITRLDISFAVNKLSQFSEAPRL 411

[Close]

BLAST of Cmc08g0224721 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 72.4 bits (176), Expect = 5.6e-13
Identity = 44/146 (30.14%), Postives = 76/146 (52.05%), Query Frame = 0


Query: 73  IVVYIDDLNIIGTPEE-LSKTIEYLKKEFEMKDLGKTKFCLGLQIEHLADGIFIHQSTYT 132
           +++Y+DD+ + G+    L+  I  L   F MKDLG   + LG+QI+    G+F+ Q+ Y 
Sbjct: 3   LLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYA 62

Query: 133 EKILKRLYMDKAHLLNIPMVVRPLDVRKDIFRPRKDNDELLGPEVPYLSAIGALMYLANN 192
           E+IL    M     ++ P+   PL +   +   +  +         + S +GAL YL   
Sbjct: 63  EQILNNAGMLDCKPMSTPL---PLKLNSSVSTAKYPDPS------DFRSIVGALQYL-TL 122

Query: 193 TRPDIAFSVNLLAKYSSSPTIKDIGM 218
           TRPDI+++VN++ +    PT+ D  +
Sbjct: 123 TRPDISYAVNIVCQRMHEPTLADFDL 138

The following BLAST results are available for this feature:

BLAST of Cmc08g0224721 vs. NCBI nr


Match Name	E-value	Identity	Description
RVW50867.1	3.7e-91	77.73	Copia protein [Vitis vinifera]	[more]
RVW93168.1	4.8e-91	77.73	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
RVW59049.1	1.1e-90	77.25	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
CAN77974.1	1.1e-90	77.25	hypothetical protein VITISV_006175 [Vitis vinifera]	[more]
RVW51051.1	2.4e-90	77.25	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]

BLAST of Cmc08g0224721 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	7.4e-26	34.11	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	7.6e-23	31.63	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q94HW2	3.6e-20	32.28	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P25600	5.0e-14	28.57	Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain AT...	[more]
P92519	7.9e-12	30.14	Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cmc08g0224721 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2N9I5S5	1.3e-94	79.34	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatic...	[more]
A0A2N9G9W6	1.3e-94	79.34	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatic...	[more]
A0A2N9G6F8	1.3e-94	79.34	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatic...	[more]
A0A2N9GX57	1.3e-94	79.34	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatic...	[more]
A0A2N9HZE8	1.3e-94	79.34	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatic...	[more]

BLAST of Cmc08g0224721 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	2.6e-18	31.46	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	5.6e-13	30.14	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 16..150 e-value: 4.4E-25 score: 88.7
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 22..213

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0224721.1	Cmc08g0224721.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding