Cmc08g0224611 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0224611
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag-pol polyprotein
Location	CMiso1.1chr08: 14855069 .. 14855587 (-)
RNA-Seq Expression	Cmc08g0224611
Synteny	Cmc08g0224611

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTCCACCATTGAACCTTCGACTGTTGACTCTGCTCTCAAGGATGAGTATTGGAAATGCTATGCAAGAGGAGCTACTGCAATTTAGACGAAACATTATCTGGACGTTAGTCTCAAAGTTAGAAGGTGTAAATGTTATTGGCACCAAATGGATATTCAAAAATAAGATTGATGAAATTGGATGTGTGACGAAAAATAAAGCTAGATTAGTAGCTCAAGGGTATACTCAAGTTGAAGGTGTTGACTTTGATGAAACGTTTGCTCCTGTTGCTCGACTTGAAGTTATTCGACTTTTACTGGGTATATCATGCATACAGAAATTTAAATTGTATCAGATGGATTTAAAGAGTGTCTTCTTAAATGGGTACTTGAATGAGGAAGTTTATGTTGCTCAACCAAAAGGCTTTGTAGATTCCGAGCACCCGAAGCATGTGTATAAGCTCAACAAAGCCTTATATGGACTAAAGCAAGCTTTGAAAGCTTGGTATGACCGGCTAACTGTATACTTAAGAGGTTGA

mRNA sequence

ATGTTTCCACCATTGAACCTTCGACTGTTGACTCTGCTCTCAAGGATGAGTATTGGAAATGCTATGCAAGAGGAGCTACTGCAATTTAGACGAAACATTATCTGGACGTTAGTCTCAAAGTTAGAAGGTGTAAATGTTATTGGCACCAAATGGATATTCAAAAATAAGATTGATGAAATTGGATGTGTGACGAAAAATAAAGCTAGATTAGTAGCTCAAGGGTATACTCAAGTTGAAGGTGTTGACTTTGATGAAACGTTTGCTCCTGTTGCTCGACTTGAAGTTATTCGACTTTTACTGGGTATATCATGCATACAGAAATTTAAATTGTATCAGATGGATTTAAAGAGTGTCTTCTTAAATGGGTACTTGAATGAGGAAGTTTATGTTGCTCAACCAAAAGGCTTTGTAGATTCCGAGCACCCGAAGCATGTGTATAAGCTCAACAAAGCCTTATATGGACTAAAGCAAGCTTTGAAAGCTTGGTATGACCGGCTAACTGTATACTTAAGAGGTTGA

Coding sequence (CDS)

ATGTTTCCACCATTGAACCTTCGACTGTTGACTCTGCTCTCAAGGATGAGTATTGGAAATGCTATGCAAGAGGAGCTACTGCAATTTAGACGAAACATTATCTGGACGTTAGTCTCAAAGTTAGAAGGTGTAAATGTTATTGGCACCAAATGGATATTCAAAAATAAGATTGATGAAATTGGATGTGTGACGAAAAATAAAGCTAGATTAGTAGCTCAAGGGTATACTCAAGTTGAAGGTGTTGACTTTGATGAAACGTTTGCTCCTGTTGCTCGACTTGAAGTTATTCGACTTTTACTGGGTATATCATGCATACAGAAATTTAAATTGTATCAGATGGATTTAAAGAGTGTCTTCTTAAATGGGTACTTGAATGAGGAAGTTTATGTTGCTCAACCAAAAGGCTTTGTAGATTCCGAGCACCCGAAGCATGTGTATAAGCTCAACAAAGCCTTATATGGACTAAAGCAAGCTTTGAAAGCTTGGTATGACCGGCTAACTGTATACTTAAGAGGTTGA

Protein sequence

MFPPLNLRLLTLLSRMSIGNAMQEELLQFRRNIIWTLVSKLEGVNVIGTKWIFKNKIDEIGCVTKNKARLVAQGYTQVEGVDFDETFAPVARLEVIRLLLGISCIQKFKLYQMDLKSVFLNGYLNEEVYVAQPKGFVDSEHPKHVYKLNKALYGLKQALKAWYDRLTVYLRG

Homology

[Close]

BLAST of Cmc08g0224611 vs. NCBI nr
Match: TYK00141.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 335.1 bits (858), Expect = 3.5e-88
Identity = 166/168 (98.81%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   MFPPLNLRLLTLLSRMSIGNAMQEELLQFRRNIIWTLVSKLEGVNVIGTKWIFKNKIDEI 60
           MFPPLNLRLLTLLSRMSIGNAMQEELLQFRRNIIWTLVSKLEGVNVIGTKWIFKNKIDEI
Sbjct: 672 MFPPLNLRLLTLLSRMSIGNAMQEELLQFRRNIIWTLVSKLEGVNVIGTKWIFKNKIDEI 731

Query: 61  GCVTKNKARLVAQGYTQVEGVDFDETFAPVARLEVIRLLLGISCIQKFKLYQMDLKSVFL 120
           GCVTKNKARLVAQGYTQVEGVDFDETFAPVARLEVIRLLLGISCIQKFKLYQMDLKSVFL
Sbjct: 732 GCVTKNKARLVAQGYTQVEGVDFDETFAPVARLEVIRLLLGISCIQKFKLYQMDLKSVFL 791

Query: 121 NGYLNEEVYVAQPKGFVDSEHPKHVYKLNKALYGLKQALKAWYDRLTV 169
           NGYLNEEVYVAQPKGFVDSEHPKHVYKLNK+LYGLKQALKAWYDRLT+
Sbjct: 792 NGYLNEEVYVAQPKGFVDSEHPKHVYKLNKSLYGLKQALKAWYDRLTL 839

[Close]

BLAST of Cmc08g0224611 vs. NCBI nr
Match: KAA0053200.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 333.6 bits (854), Expect = 1.0e-87
Identity = 166/168 (98.81%), Postives = 167/168 (99.40%), Query Frame = 0


Query: 1   MFPPLNLRLLTLLSRMSIGNAMQEELLQFRRNIIWTLVSKLEGVNVIGTKWIFKNKIDEI 60
           MFPPLNLRLLTLLSRMSIGNAMQEELLQFRRNIIWTLVSKLEGVNVIGTKWIFKNKID I
Sbjct: 708 MFPPLNLRLLTLLSRMSIGNAMQEELLQFRRNIIWTLVSKLEGVNVIGTKWIFKNKIDVI 767

Query: 61  GCVTKNKARLVAQGYTQVEGVDFDETFAPVARLEVIRLLLGISCIQKFKLYQMDLKSVFL 120
           GCVTKNKARLVAQGYTQVEGVDFDETFAPVARLEVIRLLLGISCIQKFKLYQMDLKSVFL
Sbjct: 768 GCVTKNKARLVAQGYTQVEGVDFDETFAPVARLEVIRLLLGISCIQKFKLYQMDLKSVFL 827

Query: 121 NGYLNEEVYVAQPKGFVDSEHPKHVYKLNKALYGLKQALKAWYDRLTV 169
           NGYLNEEVYVAQPKGFVDSEHPKHVYKLNKALYGLKQALKAWYDRLT+
Sbjct: 828 NGYLNEEVYVAQPKGFVDSEHPKHVYKLNKALYGLKQALKAWYDRLTL 875

[Close]

BLAST of Cmc08g0224611 vs. NCBI nr
Match: KAA0053137.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK01543.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 292.4 bits (747), Expect = 2.6e-75
Identity = 141/153 (92.16%), Postives = 146/153 (95.42%), Query Frame = 0


Query: 20  NAMQEELLQFRRNIIWTLVSKLEGVNVIGTKWIFKNKIDEIGCVTKNKARLVAQGYTQVE 79
           N MQEELLQFRRN +WTL+SK EGVNVIGTKWIFKNK DE GCVTKNKARLVAQGYTQVE
Sbjct: 440 NTMQEELLQFRRNNVWTLLSKPEGVNVIGTKWIFKNKTDETGCVTKNKARLVAQGYTQVE 499

Query: 80  GVDFDETFAPVARLEVIRLLLGISCIQKFKLYQMDLKSVFLNGYLNEEVYVAQPKGFVDS 139
           GVDFDETFAPVARLE IRLLLGISCIQKFKLYQ+D+KS FLNGYLNEEVYVAQPKGFVDS
Sbjct: 500 GVDFDETFAPVARLEAIRLLLGISCIQKFKLYQIDVKSTFLNGYLNEEVYVAQPKGFVDS 559

Query: 140 EHPKHVYKLNKALYGLKQALKAWYDRLTVYLRG 173
           EHPKHVYKLNKALYGLKQAL+AWYDRLTVYLRG
Sbjct: 560 EHPKHVYKLNKALYGLKQALRAWYDRLTVYLRG 592

[Close]

BLAST of Cmc08g0224611 vs. NCBI nr
Match: KAA0035157.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 283.5 bits (724), Expect = 1.2e-72
Identity = 140/153 (91.50%), Postives = 142/153 (92.81%), Query Frame = 0


Query: 20  NAMQEELLQFRRNIIWTLVSKLEGVNVIGTKWIFKNKIDEIGCVTKNKARLVAQGYTQVE 79
           NAMQEELLQFRRN +W LV K  GVNVIGTKWIFKNK DEIGCVTKNKARLVAQGYTQVE
Sbjct: 615 NAMQEELLQFRRNNVWMLVLKPVGVNVIGTKWIFKNKTDEIGCVTKNKARLVAQGYTQVE 674

Query: 80  GVDFDETFAPVARLEVIRLLLGISCIQKFKLYQMDLKSVFLNGYLNEEVYVAQPKGFVDS 139
           GVDFDETFAPVARLE IRLLLGISCIQKFKLYQMD+KS FLNGYLNEEVYVAQPKGFVD 
Sbjct: 675 GVDFDETFAPVARLEAIRLLLGISCIQKFKLYQMDVKSDFLNGYLNEEVYVAQPKGFVDF 734

Query: 140 EHPKHVYKLNKALYGLKQALKAWYDRLTVYLRG 173
           EHPKHVYKLNKALYGLKQA  AWYDRLTVYLRG
Sbjct: 735 EHPKHVYKLNKALYGLKQAPGAWYDRLTVYLRG 767

[Close]

BLAST of Cmc08g0224611 vs. NCBI nr
Match: KAA0066164.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK15206.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 283.1 bits (723), Expect = 1.6e-72
Identity = 135/153 (88.24%), Postives = 145/153 (94.77%), Query Frame = 0


Query: 20  NAMQEELLQFRRNIIWTLVSKLEGVNVIGTKWIFKNKIDEIGCVTKNKARLVAQGYTQVE 79
           NAMQEELLQFR+N +WTLVSK EGVNVIGTKW+FKNK DE GCVTKNKA+LVAQGYTQVE
Sbjct: 577 NAMQEELLQFRQNNVWTLVSKPEGVNVIGTKWVFKNKTDEAGCVTKNKAKLVAQGYTQVE 636

Query: 80  GVDFDETFAPVARLEVIRLLLGISCIQKFKLYQMDLKSVFLNGYLNEEVYVAQPKGFVDS 139
           G+DFDETFA VARLE IRLLLGISCIQKFKLYQMD+KS FL+GYLNEEVYVAQPKGFVDS
Sbjct: 637 GIDFDETFASVARLEAIRLLLGISCIQKFKLYQMDVKSAFLDGYLNEEVYVAQPKGFVDS 696

Query: 140 EHPKHVYKLNKALYGLKQALKAWYDRLTVYLRG 173
           EHPKH+YKLNKALYGLKQA +AWYD+LTVYLRG
Sbjct: 697 EHPKHMYKLNKALYGLKQASRAWYDQLTVYLRG 729

[Close]

BLAST of Cmc08g0224611 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.6e-30
Identity = 67/152 (44.08%), Postives = 97/152 (63.82%), Query Frame = 0


Query: 20   NAMQEELLQFRRNIIWTLVSKLEG-VNVIGTKWIFKNKIDEIGCVTKNKARLVAQGYTQV 79
            NAM  E+     N  W LV      V ++G +WIF  K +  G + + KARLVA+GY Q 
Sbjct: 970  NAMGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARLVAKGYNQR 1029

Query: 80   EGVDFDETFAPVARLEVIRLLLGISCIQKFKLYQMDLKSVFLNGYLNEEVYVAQPKGFVD 139
             G+D+ ETF+PV +   IR++LG++  + + + Q+D+ + FL G L ++VY++QP GF+D
Sbjct: 1030 PGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPGFID 1089

Query: 140  SEHPKHVYKLNKALYGLKQALKAWYDRLTVYL 171
             + P +V KL KALYGLKQA +AWY  L  YL
Sbjct: 1090 KDRPNYVCKLRKALYGLKQAPRAWYVELRNYL 1121

[Close]

BLAST of Cmc08g0224611 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 4.6e-30
Identity = 66/151 (43.71%), Postives = 96/151 (63.58%), Query Frame = 0


Query: 21   AMQEELLQFRRNIIWTLV-SKLEGVNVIGTKWIFKNKIDEIGCVTKNKARLVAQGYTQVE 80
            AM  E+     N  W LV      V ++G +WIF  K +  G + + KARLVA+GY Q  
Sbjct: 954  AMGSEINAQIGNHTWDLVPPPPPSVTIVGCRWIFTKKFNSDGSLNRYKARLVAKGYNQRP 1013

Query: 81   GVDFDETFAPVARLEVIRLLLGISCIQKFKLYQMDLKSVFLNGYLNEEVYVAQPKGFVDS 140
            G+D+ ETF+PV +   IR++LG++  + + + Q+D+ + FL G L +EVY++QP GFVD 
Sbjct: 1014 GLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDEVYMSQPPGFVDK 1073

Query: 141  EHPKHVYKLNKALYGLKQALKAWYDRLTVYL 171
            + P +V +L KA+YGLKQA +AWY  L  YL
Sbjct: 1074 DRPDYVCRLRKAIYGLKQAPRAWYVELRTYL 1104

[Close]

BLAST of Cmc08g0224611 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 129.4 bits (324), Expect = 3.9e-29
Identity = 62/144 (43.06%), Postives = 95/144 (65.97%), Query Frame = 0


Query: 21   AMQEELLQFRRNIIWTLVSKLEGVNVIGTKWIFKNKIDEIGCVTKNKARLVAQGYTQVEG 80
            A+  EL   + N  WT+  + E  N++ ++W+F  K +E+G   + KARLVA+G+TQ   
Sbjct: 909  AINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQKYQ 968

Query: 81   VDFDETFAPVARLEVIRLLLGISCIQKFKLYQMDLKSVFLNGYLNEEVYVAQPKGFVDSE 140
            +D++ETFAPVAR+   R +L +      K++QMD+K+ FLNG L EE+Y+  P+G   S 
Sbjct: 969  IDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQGI--SC 1028

Query: 141  HPKHVYKLNKALYGLKQALKAWYD 165
            +  +V KLNKA+YGLKQA + W++
Sbjct: 1029 NSDNVCKLNKAIYGLKQAARCWFE 1050

[Close]

BLAST of Cmc08g0224611 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 4.7e-27
Identity = 61/151 (40.40%), Postives = 96/151 (63.58%), Query Frame = 0


Query: 21  AMQEELLQFRRNIIWTLVSKLEGVNVIGTKWIFKNKIDEIGCVTKNKARLVAQGYTQVEG 80
           AMQEE+   ++N  + LV   +G   +  KW+FK K D    + + KARLV +G+ Q +G
Sbjct: 829 AMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGFEQKKG 888

Query: 81  VDFDETFAPVARLEVIRLLLGISCIQKFKLYQMDLKSVFLNGYLNEEVYVAQPKGFVDSE 140
           +DFDE F+PV ++  IR +L ++     ++ Q+D+K+ FL+G L EE+Y+ QP+GF  + 
Sbjct: 889 IDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVAG 948

Query: 141 HPKHVYKLNKALYGLKQALKAWYDRLTVYLR 172
               V KLNK+LYGLKQA + WY +   +++
Sbjct: 949 KKHMVCKLNKSLYGLKQAPRQWYMKFDSFMK 979

[Close]

BLAST of Cmc08g0224611 vs. ExPASy Swiss-Prot
Match: P92520 (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.3e-13
Identity = 38/83 (45.78%), Postives = 52/83 (62.65%), Query Frame = 0


Query: 21  AMQEELLQFRRNIIWTLVSKLEGVNVIGTKWIFKNKIDEIGCVTKNKARLVAQGYTQVEG 80
           AMQEEL    RN  W LV      N++G KW+FK K+   G + + KARLVA+G+ Q EG
Sbjct: 43  AMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEG 102

Query: 81  VDFDETFAPVARLEVIRLLLGIS 104
           + F ET++PV R   IR +L ++
Sbjct: 103 IYFVETYSPVVRTATIRTILNVA 125

[Close]

BLAST of Cmc08g0224611 vs. ExPASy TrEMBL
Match: A0A5D3BJZ7 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2510G00280 PE=4 SV=1)

HSP 1 Score: 335.1 bits (858), Expect = 1.7e-88
Identity = 166/168 (98.81%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   MFPPLNLRLLTLLSRMSIGNAMQEELLQFRRNIIWTLVSKLEGVNVIGTKWIFKNKIDEI 60
           MFPPLNLRLLTLLSRMSIGNAMQEELLQFRRNIIWTLVSKLEGVNVIGTKWIFKNKIDEI
Sbjct: 672 MFPPLNLRLLTLLSRMSIGNAMQEELLQFRRNIIWTLVSKLEGVNVIGTKWIFKNKIDEI 731

Query: 61  GCVTKNKARLVAQGYTQVEGVDFDETFAPVARLEVIRLLLGISCIQKFKLYQMDLKSVFL 120
           GCVTKNKARLVAQGYTQVEGVDFDETFAPVARLEVIRLLLGISCIQKFKLYQMDLKSVFL
Sbjct: 732 GCVTKNKARLVAQGYTQVEGVDFDETFAPVARLEVIRLLLGISCIQKFKLYQMDLKSVFL 791

Query: 121 NGYLNEEVYVAQPKGFVDSEHPKHVYKLNKALYGLKQALKAWYDRLTV 169
           NGYLNEEVYVAQPKGFVDSEHPKHVYKLNK+LYGLKQALKAWYDRLT+
Sbjct: 792 NGYLNEEVYVAQPKGFVDSEHPKHVYKLNKSLYGLKQALKAWYDRLTL 839

[Close]

BLAST of Cmc08g0224611 vs. ExPASy TrEMBL
Match: A0A5A7UDB5 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1192G00250 PE=4 SV=1)

HSP 1 Score: 333.6 bits (854), Expect = 5.0e-88
Identity = 166/168 (98.81%), Postives = 167/168 (99.40%), Query Frame = 0


Query: 1   MFPPLNLRLLTLLSRMSIGNAMQEELLQFRRNIIWTLVSKLEGVNVIGTKWIFKNKIDEI 60
           MFPPLNLRLLTLLSRMSIGNAMQEELLQFRRNIIWTLVSKLEGVNVIGTKWIFKNKID I
Sbjct: 708 MFPPLNLRLLTLLSRMSIGNAMQEELLQFRRNIIWTLVSKLEGVNVIGTKWIFKNKIDVI 767

Query: 61  GCVTKNKARLVAQGYTQVEGVDFDETFAPVARLEVIRLLLGISCIQKFKLYQMDLKSVFL 120
           GCVTKNKARLVAQGYTQVEGVDFDETFAPVARLEVIRLLLGISCIQKFKLYQMDLKSVFL
Sbjct: 768 GCVTKNKARLVAQGYTQVEGVDFDETFAPVARLEVIRLLLGISCIQKFKLYQMDLKSVFL 827

Query: 121 NGYLNEEVYVAQPKGFVDSEHPKHVYKLNKALYGLKQALKAWYDRLTV 169
           NGYLNEEVYVAQPKGFVDSEHPKHVYKLNKALYGLKQALKAWYDRLT+
Sbjct: 828 NGYLNEEVYVAQPKGFVDSEHPKHVYKLNKALYGLKQALKAWYDRLTL 875

[Close]

BLAST of Cmc08g0224611 vs. ExPASy TrEMBL
Match: A0A5D3BPB3 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G001130 PE=4 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 1.3e-75
Identity = 141/153 (92.16%), Postives = 146/153 (95.42%), Query Frame = 0


Query: 20  NAMQEELLQFRRNIIWTLVSKLEGVNVIGTKWIFKNKIDEIGCVTKNKARLVAQGYTQVE 79
           N MQEELLQFRRN +WTL+SK EGVNVIGTKWIFKNK DE GCVTKNKARLVAQGYTQVE
Sbjct: 440 NTMQEELLQFRRNNVWTLLSKPEGVNVIGTKWIFKNKTDETGCVTKNKARLVAQGYTQVE 499

Query: 80  GVDFDETFAPVARLEVIRLLLGISCIQKFKLYQMDLKSVFLNGYLNEEVYVAQPKGFVDS 139
           GVDFDETFAPVARLE IRLLLGISCIQKFKLYQ+D+KS FLNGYLNEEVYVAQPKGFVDS
Sbjct: 500 GVDFDETFAPVARLEAIRLLLGISCIQKFKLYQIDVKSTFLNGYLNEEVYVAQPKGFVDS 559

Query: 140 EHPKHVYKLNKALYGLKQALKAWYDRLTVYLRG 173
           EHPKHVYKLNKALYGLKQAL+AWYDRLTVYLRG
Sbjct: 560 EHPKHVYKLNKALYGLKQALRAWYDRLTVYLRG 592

[Close]

BLAST of Cmc08g0224611 vs. ExPASy TrEMBL
Match: A0A5A7T0Q0 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold57G002510 PE=4 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 5.9e-73
Identity = 140/153 (91.50%), Postives = 142/153 (92.81%), Query Frame = 0


Query: 20  NAMQEELLQFRRNIIWTLVSKLEGVNVIGTKWIFKNKIDEIGCVTKNKARLVAQGYTQVE 79
           NAMQEELLQFRRN +W LV K  GVNVIGTKWIFKNK DEIGCVTKNKARLVAQGYTQVE
Sbjct: 615 NAMQEELLQFRRNNVWMLVLKPVGVNVIGTKWIFKNKTDEIGCVTKNKARLVAQGYTQVE 674

Query: 80  GVDFDETFAPVARLEVIRLLLGISCIQKFKLYQMDLKSVFLNGYLNEEVYVAQPKGFVDS 139
           GVDFDETFAPVARLE IRLLLGISCIQKFKLYQMD+KS FLNGYLNEEVYVAQPKGFVD 
Sbjct: 675 GVDFDETFAPVARLEAIRLLLGISCIQKFKLYQMDVKSDFLNGYLNEEVYVAQPKGFVDF 734

Query: 140 EHPKHVYKLNKALYGLKQALKAWYDRLTVYLRG 173
           EHPKHVYKLNKALYGLKQA  AWYDRLTVYLRG
Sbjct: 735 EHPKHVYKLNKALYGLKQAPGAWYDRLTVYLRG 767

[Close]

BLAST of Cmc08g0224611 vs. ExPASy TrEMBL
Match: A0A5D3CXU0 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold790G00820 PE=4 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 7.7e-73
Identity = 135/153 (88.24%), Postives = 145/153 (94.77%), Query Frame = 0


Query: 20  NAMQEELLQFRRNIIWTLVSKLEGVNVIGTKWIFKNKIDEIGCVTKNKARLVAQGYTQVE 79
           NAMQEELLQFR+N +WTLVSK EGVNVIGTKW+FKNK DE GCVTKNKA+LVAQGYTQVE
Sbjct: 577 NAMQEELLQFRQNNVWTLVSKPEGVNVIGTKWVFKNKTDEAGCVTKNKAKLVAQGYTQVE 636

Query: 80  GVDFDETFAPVARLEVIRLLLGISCIQKFKLYQMDLKSVFLNGYLNEEVYVAQPKGFVDS 139
           G+DFDETFA VARLE IRLLLGISCIQKFKLYQMD+KS FL+GYLNEEVYVAQPKGFVDS
Sbjct: 637 GIDFDETFASVARLEAIRLLLGISCIQKFKLYQMDVKSAFLDGYLNEEVYVAQPKGFVDS 696

Query: 140 EHPKHVYKLNKALYGLKQALKAWYDRLTVYLRG 173
           EHPKH+YKLNKALYGLKQA +AWYD+LTVYLRG
Sbjct: 697 EHPKHMYKLNKALYGLKQASRAWYDQLTVYLRG 729

[Close]

BLAST of Cmc08g0224611 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 130.2 bits (326), Expect = 1.6e-30
Identity = 66/156 (42.31%), Postives = 96/156 (61.54%), Query Frame = 0


Query: 21  AMQEELLQFRRNIIWTLVSKLEGVNVIGTKWIFKNKIDEIGCVTKNKARLVAQGYTQVEG 80
           AM +E+        W + +       IG KW++K K +  G + + KARLVA+GYTQ EG
Sbjct: 101 AMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGYTQQEG 160

Query: 81  VDFDETFAPVARLEVIRLLLGISCIQKFKLYQMDLKSVFLNGYLNEEVYVAQPKGFV--- 140
           +DF ETF+PV +L  ++L+L IS I  F L+Q+D+ + FLNG L+EE+Y+  P G+    
Sbjct: 161 IDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYAARQ 220

Query: 141 -DSEHPKHVYKLNKALYGLKQALKAWYDRLTVYLRG 173
            DS  P  V  L K++YGLKQA + W+ + +V L G
Sbjct: 221 GDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIG 256

[Close]

BLAST of Cmc08g0224611 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 77.8 bits (190), Expect = 9.5e-15
Identity = 38/83 (45.78%), Postives = 52/83 (62.65%), Query Frame = 0


Query: 21  AMQEELLQFRRNIIWTLVSKLEGVNVIGTKWIFKNKIDEIGCVTKNKARLVAQGYTQVEG 80
           AMQEEL    RN  W LV      N++G KW+FK K+   G + + KARLVA+G+ Q EG
Sbjct: 43  AMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEG 102

Query: 81  VDFDETFAPVARLEVIRLLLGIS 104
           + F ET++PV R   IR +L ++
Sbjct: 103 IYFVETYSPVVRTATIRTILNVA 125

The following BLAST results are available for this feature:

BLAST of Cmc08g0224611 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK00141.1	3.5e-88	98.81	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0053200.1	1.0e-87	98.81	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0053137.1	2.6e-75	92.16	gag-pol polyprotein [Cucumis melo var. makuwa] >TYK01543.1 gag-pol polyprotein [...	[more]
KAA0035157.1	1.2e-72	91.50	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0066164.1	1.6e-72	88.24	gag-pol polyprotein [Cucumis melo var. makuwa] >TYK15206.1 gag-pol polyprotein [...	[more]

BLAST of Cmc08g0224611 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94HW2	1.6e-30	44.08	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	4.6e-30	43.71	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P04146	3.9e-29	43.06	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P10978	4.7e-27	40.40	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P92520	1.3e-13	45.78	Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cmc08g0224611 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BJZ7	1.7e-88	98.81	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2510...	[more]
A0A5A7UDB5	5.0e-88	98.81	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1192...	[more]
A0A5D3BPB3	1.3e-75	92.16	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G...	[more]
A0A5A7T0Q0	5.9e-73	91.50	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold57G0...	[more]
A0A5D3CXU0	7.7e-73	88.24	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold790G...	[more]

BLAST of Cmc08g0224611 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	1.6e-30	42.31	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00820.1	9.5e-15	45.78	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 33..170 e-value: 9.0E-47 score: 159.7
None	No IPR available	PANTHER	PTHR11439:SF351	CYSTEINE-RICH RLK (RECEPTOR-LIKE PROTEIN KINASE) 8	coord: 19..170
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 19..170
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 31..165

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0224611.1	Cmc08g0224611.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding