Cmc08g0224601 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0224601
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr08: 14854052 .. 14854546 (-)
RNA-Seq Expression	Cmc08g0224601
Synteny	Cmc08g0224601

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGTATTCCTATGATACAACTCTCACTCTAGTTGGATATTGTGATGCTGACTGGGCAGGTTCAGCTGATGATCATAAAAGTACATCTGGAGGTTGCTTCTTTTTGGGAAACAATTTAATCTCTTGGTTAAGTAAGAAGCAAAACTTTGTTTTTTTATCTATAGCTGAAGTTGAATATATAGCTGCAGGTAGTGGTTGTACACAATTGATTTGGATGAAAAACATGCTGCATGAATATGGCTTTGATCAGGACACTATGACGTTGTATTATGACAATGTGAGTGCAATTGATATATCTAAGAATCCCGTTCAACATAGTCGAACTATGCATATTGATATAAGACACCACTTTATTCGAGAACTAGTTGAAGACAAAGTAATGAAGCTTGATCATATTTGTTCAAATTTACAATTAGCCGATATCTTCACTAAACCCCTGGATGCTAGCTCATTCGAATACTTACGTGCTGGTTTAGGTGTGTGTCGCACTTAA

mRNA sequence

ATGATGTATTCCTATGATACAACTCTCACTCTAGTTGGATATTGTGATGCTGACTGGGCAGGTTCAGCTGATGATCATAAAAGTACATCTGGAGGTTGCTTCTTTTTGGGAAACAATTTAATCTCTTGGTTAAGTAAGAAGCAAAACTTTGTTTTTTTATCTATAGCTGAAGTTGAATATATAGCTGCAGGTAGTGGTTGTACACAATTGATTTGGATGAAAAACATGCTGCATGAATATGGCTTTGATCAGGACACTATGACGTTGTATTATGACAATGTGAGTGCAATTGATATATCTAAGAATCCCGTTCAACATAGTCGAACTATGCATATTGATATAAGACACCACTTTATTCGAGAACTAGTTGAAGACAAAGTAATGAAGCTTGATCATATTTGTTCAAATTTACAATTAGCCGATATCTTCACTAAACCCCTGGATGCTAGCTCATTCGAATACTTACGTGCTGGTTTAGGTGTGTGTCGCACTTAA

Coding sequence (CDS)

ATGATGTATTCCTATGATACAACTCTCACTCTAGTTGGATATTGTGATGCTGACTGGGCAGGTTCAGCTGATGATCATAAAAGTACATCTGGAGGTTGCTTCTTTTTGGGAAACAATTTAATCTCTTGGTTAAGTAAGAAGCAAAACTTTGTTTTTTTATCTATAGCTGAAGTTGAATATATAGCTGCAGGTAGTGGTTGTACACAATTGATTTGGATGAAAAACATGCTGCATGAATATGGCTTTGATCAGGACACTATGACGTTGTATTATGACAATGTGAGTGCAATTGATATATCTAAGAATCCCGTTCAACATAGTCGAACTATGCATATTGATATAAGACACCACTTTATTCGAGAACTAGTTGAAGACAAAGTAATGAAGCTTGATCATATTTGTTCAAATTTACAATTAGCCGATATCTTCACTAAACCCCTGGATGCTAGCTCATTCGAATACTTACGTGCTGGTTTAGGTGTGTGTCGCACTTAA

Protein sequence

MMYSYDTTLTLVGYCDADWAGSADDHKSTSGGCFFLGNNLISWLSKKQNFVFLSIAEVEYIAAGSGCTQLIWMKNMLHEYGFDQDTMTLYYDNVSAIDISKNPVQHSRTMHIDIRHHFIRELVEDKVMKLDHICSNLQLADIFTKPLDASSFEYLRAGLGVCRT

Homology

[Close]

BLAST of Cmc08g0224601 vs. NCBI nr
Match: KAA0055610.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK24458.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 308.9 bits (790), Expect = 2.6e-80
Identity = 150/164 (91.46%), Postives = 151/164 (92.07%), Query Frame = 0


Query: 1   MMYSYDTTLTLVGYCDADWAGSADDHKSTSGGCFFLGNNLISWLSKKQNFVFLSIAEVEY 60
           MMYSYDTT  LVGYCDADWAGSADD KSTSGGCFFLGNNLISWLSKKQN V LS  E EY
Sbjct: 120 MMYSYDTTPFLVGYCDADWAGSADDRKSTSGGCFFLGNNLISWLSKKQNCVSLSTTEAEY 179

Query: 61  IAAGSGCTQLIWMKNMLHEYGFDQDTMTLYYDNVSAIDISKNPVQHSRTMHIDIRHHFIR 120
           IAAGSGCTQLIWMKNMLHEYGFDQDTMTLY DN SAIDISKNPVQHSRT HIDIRHHFIR
Sbjct: 180 IAAGSGCTQLIWMKNMLHEYGFDQDTMTLYCDNTSAIDISKNPVQHSRTKHIDIRHHFIR 239

Query: 121 ELVEDKVMKLDHICSNLQLADIFTKPLDASSFEYLRAGLGVCRT 165
           ELVEDKV+KLDHI SNLQL DIFTKPLDASSFEYLRAGLGVCRT
Sbjct: 240 ELVEDKVIKLDHIRSNLQLVDIFTKPLDASSFEYLRAGLGVCRT 283

[Close]

BLAST of Cmc08g0224601 vs. NCBI nr
Match: TYK03343.1 (uncharacterized protein E5676_scaffold206G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 256.9 bits (655), Expect = 1.2e-64
Identity = 128/147 (87.07%), Postives = 131/147 (89.12%), Query Frame = 0


Query: 1   MMYSYDTTLTLVGYCDADWAGSADDHKSTSGGCFFLGNNLISWLSKKQNFVFLSIAEVEY 60
           MMYSYD T TL GYCDADWAGSADD KSTSGGCFFLGNNLIS LSKKQN V LSIAE EY
Sbjct: 97  MMYSYDITPTLFGYCDADWAGSADDRKSTSGGCFFLGNNLISSLSKKQNRVSLSIAEAEY 156

Query: 61  IAAGSGCTQLIWMKNMLHEYGFDQDTMTLYYDNVSAIDISKNPVQHSRTMHIDIRHHFIR 120
           IAAGSGCTQLIWMKNMLHEY FDQDTM LY DN+SAIDISKN VQHSRT +IDIRHHFIR
Sbjct: 157 IAAGSGCTQLIWMKNMLHEYCFDQDTMRLYCDNMSAIDISKNLVQHSRTKNIDIRHHFIR 216

Query: 121 ELVEDKVMKLDHICSNLQLADIFTKPL 148
           ELVEDKV+KLDHI SNLQL DIFT PL
Sbjct: 217 ELVEDKVIKLDHIRSNLQLVDIFTNPL 243

[Close]

BLAST of Cmc08g0224601 vs. NCBI nr
Match: KAA0056181.1 (uncharacterized protein E6C27_scaffold431G00070 [Cucumis melo var. makuwa])

HSP 1 Score: 256.9 bits (655), Expect = 1.2e-64
Identity = 128/147 (87.07%), Postives = 131/147 (89.12%), Query Frame = 0


Query: 1   MMYSYDTTLTLVGYCDADWAGSADDHKSTSGGCFFLGNNLISWLSKKQNFVFLSIAEVEY 60
           MMYSYD T TL GYCDADWAGSADD KSTSGGCFFLGNNLIS LSKKQN V LSIAE EY
Sbjct: 112 MMYSYDITPTLFGYCDADWAGSADDRKSTSGGCFFLGNNLISSLSKKQNRVSLSIAEAEY 171

Query: 61  IAAGSGCTQLIWMKNMLHEYGFDQDTMTLYYDNVSAIDISKNPVQHSRTMHIDIRHHFIR 120
           IAAGSGCTQLIWMKNMLHEY FDQDTM LY DN+SAIDISKN VQHSRT +IDIRHHFIR
Sbjct: 172 IAAGSGCTQLIWMKNMLHEYCFDQDTMRLYCDNMSAIDISKNLVQHSRTKNIDIRHHFIR 231

Query: 121 ELVEDKVMKLDHICSNLQLADIFTKPL 148
           ELVEDKV+KLDHI SNLQL DIFT PL
Sbjct: 232 ELVEDKVIKLDHIRSNLQLVDIFTNPL 258

[Close]

BLAST of Cmc08g0224601 vs. NCBI nr
Match: TYK23188.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 252.3 bits (643), Expect = 2.9e-63
Identity = 122/144 (84.72%), Postives = 128/144 (88.89%), Query Frame = 0


Query: 1   MMYSYDTTLTLVGYCDADWAGSADDHKSTSGGCFFLGNNLISWLSKKQNFVFLSIAEVEY 60
           MMYSYDTT TLVGYCDADWAG ADD KSTSGGCFFLGNNLI WLSKKQN V LS  E EY
Sbjct: 236 MMYSYDTTPTLVGYCDADWAGLADDRKSTSGGCFFLGNNLIYWLSKKQNCVSLSTTEAEY 295

Query: 61  IAAGSGCTQLIWMKNMLHEYGFDQDTMTLYYDNVSAIDISKNPVQHSRTMHIDIRHHFIR 120
           I AGSGCTQLIWM+N+L EYGFDQ T+TLY DN+SAIDISKNPVQHSR  HIDIRHHFIR
Sbjct: 296 IVAGSGCTQLIWMENILDEYGFDQHTITLYSDNMSAIDISKNPVQHSRIKHIDIRHHFIR 355

Query: 121 ELVEDKVMKLDHICSNLQLADIFT 145
           ELVEDKV++LDHI SNLQLADIFT
Sbjct: 356 ELVEDKVIRLDHIRSNLQLADIFT 379

[Close]

BLAST of Cmc08g0224601 vs. NCBI nr
Match: KAA0053200.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 251.9 bits (642), Expect = 3.8e-63
Identity = 127/159 (79.87%), Postives = 127/159 (79.87%), Query Frame = 0


Query: 1    MMYSYDTTLTLVGYCDADWAGSADDHKSTSGGCFFLGNNLISWLSKKQNFVFLSIAEVEY 60
            MMYSYDTTLTLVGYCDADWAGSADDHKSTSG                             
Sbjct: 973  MMYSYDTTLTLVGYCDADWAGSADDHKSTSG----------------------------- 1032

Query: 61   IAAGSGCTQLIWMKNMLHEYGFDQDTMTLYYDNVSAIDISKNPVQHSRTMHIDIRHHFIR 120
               GSGCTQLIWMKNMLHEYGFDQDTMTLYYDNVSAIDISKNPVQHSRTMHIDIRHHFIR
Sbjct: 1033 ---GSGCTQLIWMKNMLHEYGFDQDTMTLYYDNVSAIDISKNPVQHSRTMHIDIRHHFIR 1092

Query: 121  ELVEDKVMKLDHICSNLQLADIFTKPLDASSFEYLRAGL 160
            ELVEDKVMKLDHICSNLQLADIFTKPLDASSFEYLRAGL
Sbjct: 1093 ELVEDKVMKLDHICSNLQLADIFTKPLDASSFEYLRAGL 1099

[Close]

BLAST of Cmc08g0224601 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.7e-29
Identity = 67/151 (44.37%), Postives = 93/151 (61.59%), Query Frame = 0


Query: 11   LVGYCDADWAGSADDHKSTSGGCFFLGNNLISWLSKKQNFVFLSIAEVEYIAAGSGCTQL 70
            L GY DAD AG  D+ KS++G  F      ISW SK Q  V LS  E EYIAA     ++
Sbjct: 1175 LKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEM 1234

Query: 71   IWMKNMLHEYGFDQDTMTLYYDNVSAIDISKNPVQHSRTMHIDIRHHFIRELVEDKVMKL 130
            IW+K  L E G  Q    +Y D+ SAID+SKN + H+RT HID+R+H+IRE+V+D+ +K+
Sbjct: 1235 IWLKRFLQELGLHQKEYVVYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESLKV 1294

Query: 131  DHICSNLQLADIFTKPLDASSFEYLRAGLGV 162
              I +N   AD+ TK +  + FE  +  +G+
Sbjct: 1295 LKISTNENPADMLTKVVPRNKFELCKELVGM 1325

[Close]

BLAST of Cmc08g0224601 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 125.2 bits (313), Expect = 7.0e-28
Identity = 67/153 (43.79%), Postives = 95/153 (62.09%), Query Frame = 0


Query: 11   LVGYCDADWAGSADDHKSTSGGCFFLGN-NLISWLSKKQNFVFLSIAEVEYIAAGSGCTQ 70
            ++GY D+DWAGS  D KST+G  F + + NLI W +K+QN V  S  E EY+A      +
Sbjct: 1248 IIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVRE 1307

Query: 71   LIWMKNMLHEYGFD-QDTMTLYYDNVSAIDISKNPVQHSRTMHIDIRHHFIRELVEDKVM 130
             +W+K +L       ++ + +Y DN   I I+ NP  H R  HIDI++HF RE V++ V+
Sbjct: 1308 ALWLKFLLTSINIKLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFAREQVQNNVI 1367

Query: 131  KLDHICSNLQLADIFTKPLDASSFEYLRAGLGV 162
             L++I +  QLADIFTKPL A+ F  LR  LG+
Sbjct: 1368 CLEYIPTENQLADIFTKPLPAARFVELRDKLGL 1400

[Close]

BLAST of Cmc08g0224601 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 4.5e-27
Identity = 65/157 (41.40%), Postives = 94/157 (59.87%), Query Frame = 0


Query: 8    TLTLVGYCDADWAGSADDHKSTSGGCFFLGNNLISWLSKKQNFVFLSIAEVEYIAAGSGC 67
            TL+L  Y DADWAG  DD+ ST+G   +LG++ ISW SKKQ  V  S  E EY +  +  
Sbjct: 1306 TLSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTS 1365

Query: 68   TQLIWMKNMLHEYGFD-QDTMTLYYDNVSAIDISKNPVQHSRTMHIDIRHHFIRELVEDK 127
            +++ W+ ++L E G        +Y DNV A  +  NPV HSR  HI I +HFIR  V+  
Sbjct: 1366 SEMQWICSLLTELGIRLTRPPVIYCDNVGATYLCANPVFHSRMKHIAIDYHFIRNQVQSG 1425

Query: 128  VMKLDHICSNLQLADIFTKPLDASSFEYLRAGLGVCR 164
             +++ H+ ++ QLAD  TKPL  ++F+   + +GV R
Sbjct: 1426 ALRVVHVSTHDQLADTLTKPLSRTAFQNFASKIGVTR 1462

[Close]

BLAST of Cmc08g0224601 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.0e-26
Identity = 64/157 (40.76%), Postives = 92/157 (58.60%), Query Frame = 0


Query: 8    TLTLVGYCDADWAGSADDHKSTSGGCFFLGNNLISWLSKKQNFVFLSIAEVEYIAAGSGC 67
            TL+L  Y DADWAG  DD+ ST+G   +LG++ ISW SKKQ  V  S  E EY +  +  
Sbjct: 1289 TLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTS 1348

Query: 68   TQLIWMKNMLHEYGFD-QDTMTLYYDNVSAIDISKNPVQHSRTMHIDIRHHFIRELVEDK 127
            ++L W+ ++L E G        +Y DNV A  +  NPV HSR  HI + +HFIR  V+  
Sbjct: 1349 SELQWICSLLTELGIQLSHPPVIYCDNVGATYLCANPVFHSRMKHIALDYHFIRNQVQSG 1408

Query: 128  VMKLDHICSNLQLADIFTKPLDASSFEYLRAGLGVCR 164
             +++ H+ ++ QLAD  TKPL   +F+     +GV +
Sbjct: 1409 ALRVVHVSTHDQLADTLTKPLSRVAFQNFSRKIGVIK 1445

[Close]

BLAST of Cmc08g0224601 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 5.0e-10
Identity = 31/66 (46.97%), Postives = 38/66 (57.58%), Query Frame = 0


Query: 8   TLTLVGYCDADWAGSADDHKSTSGGCFFLGNNLISWLSKKQNFVFLSIAEVEYIAAGSGC 67
           T  LVGY DADWAG  +  +STSG  F L    +SW SKKQ  V LS  E EY+A     
Sbjct: 68  TAKLVGYSDADWAGDVESRRSTSGYLFKLNGGCVSWRSKKQRTVALSSTEDEYMALSEAT 127

Query: 68  TQLIWM 74
            + +W+
Sbjct: 128 QEAVWL 133

[Close]

BLAST of Cmc08g0224601 vs. ExPASy TrEMBL
Match: A0A5D3DLL1 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold717G00150 PE=4 SV=1)

HSP 1 Score: 308.9 bits (790), Expect = 1.3e-80
Identity = 150/164 (91.46%), Postives = 151/164 (92.07%), Query Frame = 0


Query: 1   MMYSYDTTLTLVGYCDADWAGSADDHKSTSGGCFFLGNNLISWLSKKQNFVFLSIAEVEY 60
           MMYSYDTT  LVGYCDADWAGSADD KSTSGGCFFLGNNLISWLSKKQN V LS  E EY
Sbjct: 120 MMYSYDTTPFLVGYCDADWAGSADDRKSTSGGCFFLGNNLISWLSKKQNCVSLSTTEAEY 179

Query: 61  IAAGSGCTQLIWMKNMLHEYGFDQDTMTLYYDNVSAIDISKNPVQHSRTMHIDIRHHFIR 120
           IAAGSGCTQLIWMKNMLHEYGFDQDTMTLY DN SAIDISKNPVQHSRT HIDIRHHFIR
Sbjct: 180 IAAGSGCTQLIWMKNMLHEYGFDQDTMTLYCDNTSAIDISKNPVQHSRTKHIDIRHHFIR 239

Query: 121 ELVEDKVMKLDHICSNLQLADIFTKPLDASSFEYLRAGLGVCRT 165
           ELVEDKV+KLDHI SNLQL DIFTKPLDASSFEYLRAGLGVCRT
Sbjct: 240 ELVEDKVIKLDHIRSNLQLVDIFTKPLDASSFEYLRAGLGVCRT 283

[Close]

BLAST of Cmc08g0224601 vs. ExPASy TrEMBL
Match: A0A5A7URM6 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold431G00070 PE=4 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 5.7e-65
Identity = 128/147 (87.07%), Postives = 131/147 (89.12%), Query Frame = 0


Query: 1   MMYSYDTTLTLVGYCDADWAGSADDHKSTSGGCFFLGNNLISWLSKKQNFVFLSIAEVEY 60
           MMYSYD T TL GYCDADWAGSADD KSTSGGCFFLGNNLIS LSKKQN V LSIAE EY
Sbjct: 112 MMYSYDITPTLFGYCDADWAGSADDRKSTSGGCFFLGNNLISSLSKKQNRVSLSIAEAEY 171

Query: 61  IAAGSGCTQLIWMKNMLHEYGFDQDTMTLYYDNVSAIDISKNPVQHSRTMHIDIRHHFIR 120
           IAAGSGCTQLIWMKNMLHEY FDQDTM LY DN+SAIDISKN VQHSRT +IDIRHHFIR
Sbjct: 172 IAAGSGCTQLIWMKNMLHEYCFDQDTMRLYCDNMSAIDISKNLVQHSRTKNIDIRHHFIR 231

Query: 121 ELVEDKVMKLDHICSNLQLADIFTKPL 148
           ELVEDKV+KLDHI SNLQL DIFT PL
Sbjct: 232 ELVEDKVIKLDHIRSNLQLVDIFTNPL 258

[Close]

BLAST of Cmc08g0224601 vs. ExPASy TrEMBL
Match: A0A5D3BUJ1 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold206G00060 PE=4 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 5.7e-65
Identity = 128/147 (87.07%), Postives = 131/147 (89.12%), Query Frame = 0


Query: 1   MMYSYDTTLTLVGYCDADWAGSADDHKSTSGGCFFLGNNLISWLSKKQNFVFLSIAEVEY 60
           MMYSYD T TL GYCDADWAGSADD KSTSGGCFFLGNNLIS LSKKQN V LSIAE EY
Sbjct: 97  MMYSYDITPTLFGYCDADWAGSADDRKSTSGGCFFLGNNLISSLSKKQNRVSLSIAEAEY 156

Query: 61  IAAGSGCTQLIWMKNMLHEYGFDQDTMTLYYDNVSAIDISKNPVQHSRTMHIDIRHHFIR 120
           IAAGSGCTQLIWMKNMLHEY FDQDTM LY DN+SAIDISKN VQHSRT +IDIRHHFIR
Sbjct: 157 IAAGSGCTQLIWMKNMLHEYCFDQDTMRLYCDNMSAIDISKNLVQHSRTKNIDIRHHFIR 216

Query: 121 ELVEDKVMKLDHICSNLQLADIFTKPL 148
           ELVEDKV+KLDHI SNLQL DIFT PL
Sbjct: 217 ELVEDKVIKLDHIRSNLQLVDIFTNPL 243

[Close]

BLAST of Cmc08g0224601 vs. ExPASy TrEMBL
Match: A0A5D3DI97 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G002180 PE=4 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 1.4e-63
Identity = 122/144 (84.72%), Postives = 128/144 (88.89%), Query Frame = 0


Query: 1   MMYSYDTTLTLVGYCDADWAGSADDHKSTSGGCFFLGNNLISWLSKKQNFVFLSIAEVEY 60
           MMYSYDTT TLVGYCDADWAG ADD KSTSGGCFFLGNNLI WLSKKQN V LS  E EY
Sbjct: 236 MMYSYDTTPTLVGYCDADWAGLADDRKSTSGGCFFLGNNLIYWLSKKQNCVSLSTTEAEY 295

Query: 61  IAAGSGCTQLIWMKNMLHEYGFDQDTMTLYYDNVSAIDISKNPVQHSRTMHIDIRHHFIR 120
           I AGSGCTQLIWM+N+L EYGFDQ T+TLY DN+SAIDISKNPVQHSR  HIDIRHHFIR
Sbjct: 296 IVAGSGCTQLIWMENILDEYGFDQHTITLYSDNMSAIDISKNPVQHSRIKHIDIRHHFIR 355

Query: 121 ELVEDKVMKLDHICSNLQLADIFT 145
           ELVEDKV++LDHI SNLQLADIFT
Sbjct: 356 ELVEDKVIRLDHIRSNLQLADIFT 379

[Close]

BLAST of Cmc08g0224601 vs. ExPASy TrEMBL
Match: A0A5A7UDB5 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1192G00250 PE=4 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 1.8e-63
Identity = 127/159 (79.87%), Postives = 127/159 (79.87%), Query Frame = 0


Query: 1    MMYSYDTTLTLVGYCDADWAGSADDHKSTSGGCFFLGNNLISWLSKKQNFVFLSIAEVEY 60
            MMYSYDTTLTLVGYCDADWAGSADDHKSTSG                             
Sbjct: 973  MMYSYDTTLTLVGYCDADWAGSADDHKSTSG----------------------------- 1032

Query: 61   IAAGSGCTQLIWMKNMLHEYGFDQDTMTLYYDNVSAIDISKNPVQHSRTMHIDIRHHFIR 120
               GSGCTQLIWMKNMLHEYGFDQDTMTLYYDNVSAIDISKNPVQHSRTMHIDIRHHFIR
Sbjct: 1033 ---GSGCTQLIWMKNMLHEYGFDQDTMTLYYDNVSAIDISKNPVQHSRTMHIDIRHHFIR 1092

Query: 121  ELVEDKVMKLDHICSNLQLADIFTKPLDASSFEYLRAGL 160
            ELVEDKVMKLDHICSNLQLADIFTKPLDASSFEYLRAGL
Sbjct: 1093 ELVEDKVMKLDHICSNLQLADIFTKPLDASSFEYLRAGL 1099

[Close]

BLAST of Cmc08g0224601 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 84.7 bits (208), Expect = 7.4e-17
Identity = 47/122 (38.52%), Postives = 63/122 (51.64%), Query Frame = 0


Query: 1   MMYSYDTTLTLVGYCDADWAGSADDHKSTSGGCFFLGNNLISWLSKKQNFVFLSIAEVEY 60
           + YS    + L  + DA +    D  +ST+G C FLG +LISW SKKQ  V  S AE EY
Sbjct: 432 LFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEY 491

Query: 61  IAAGSGCTQLIWMKNMLHEYGFDQDTMTLYY-DNVSAIDISKNPVQHSRTMHIDIRHHFI 120
            A      +++W+     E        TL + DN +AI I+ N V H RT HI+   H +
Sbjct: 492 RALSFATDEMMWLAQFFRELQLPLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSV 551

Query: 121 RE 122
           RE
Sbjct: 552 RE 553

[Close]

BLAST of Cmc08g0224601 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 61.6 bits (148), Expect = 6.7e-10
Identity = 28/67 (41.79%), Postives = 39/67 (58.21%), Query Frame = 0


Query: 6   DTTLTLVGYCDADWAGSADDHKSTSGGCFFLGNNLISWLSKKQNFVFLSIAEVEYIAAGS 65
           ++ L +  +CD+DWAG     +ST+G C FLG N+ISW +K+Q  V  S  E EY A   
Sbjct: 159 NSKLNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALAL 218

Query: 66  GCTQLIW 73
              +L W
Sbjct: 219 TAAELTW 225

The following BLAST results are available for this feature:

BLAST of Cmc08g0224601 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0055610.1	2.6e-80	91.46	gag-pol polyprotein [Cucumis melo var. makuwa] >TYK24458.1 gag-pol polyprotein [...	[more]
TYK03343.1	1.2e-64	87.07	uncharacterized protein E5676_scaffold206G00060 [Cucumis melo var. makuwa]	[more]
KAA0056181.1	1.2e-64	87.07	uncharacterized protein E6C27_scaffold431G00070 [Cucumis melo var. makuwa]	[more]
TYK23188.1	2.9e-63	84.72	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0053200.1	3.8e-63	79.87	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc08g0224601 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.7e-29	44.37	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	7.0e-28	43.79	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q94HW2	4.5e-27	41.40	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	1.0e-26	40.76	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P0CV72	5.0e-10	46.97	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]

BLAST of Cmc08g0224601 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DLL1	1.3e-80	91.46	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold717G...	[more]
A0A5A7URM6	5.7e-65	87.07	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo v...	[more]
A0A5D3BUJ1	5.7e-65	87.07	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo v...	[more]
A0A5D3DI97	1.4e-63	84.72	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G...	[more]
A0A5A7UDB5	1.8e-63	79.87	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1192...	[more]

BLAST of Cmc08g0224601 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	7.4e-17	38.52	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	6.7e-10	41.79	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 29..162
None	No IPR available	PANTHER	PTHR11439:SF355	CYSTEINE-RICH RLK (RECEPTOR-LIKE PROTEIN KINASE) 8	coord: 29..162
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 12..147 e-value: 1.63012E-74 score: 217.721

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0224601.1	Cmc08g0224601.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0052923	all-trans-nonaprenyl-diphosphate synthase (geranyl-diphosphate specific) activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding