Cmc08g0224571 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0224571
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr08: 14797151 .. 14797984 (+)
RNA-Seq Expression	Cmc08g0224571
Synteny	Cmc08g0224571

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGACAGAGAAGATGGCTTGAGTTGGTGAAGGATTATGACTGTGAGATTCTGTACCACCCAGATAAGGCAAATGTAGTAGCTGATGCGTTGAGCAGGAAGGTTGCACATTCAGCAGCGCTTATCACAAAGCACGGCCCCTTACTCAGAGATTTCGAGAGAGCTGAGATTGCAGTCTCAGTAGGGGAAGTTACCTCACAGCTGGCTCAGTTGTCAGTGCAGTCGACCTTGCGACAGAGGATTATTGTCGCTCAGTTAAAGGATCCTTATCTGGTCGAGAAGCGTCGTTTGGTAGAGACAGGGCAAGGTGAGGTTTTCCCCATATCCTCTGACGAGGACCTTATGTTTGAGGGACGTTTGTGTGTGCCAGAAGACAGTGCAGTCAAGACAGAGCTTTTGACTGAGGCTCACAGTTCTCCATTTACTATGCACCCCGGAAGTACGAAGATGTACCAAGACTTGAGGTGTGTCTATTGGTGGAGGAACATGAAGAGAGAAGTGGCAGACTTTGTCAGTAGATGTTTGGTGTGCCAGCAGGTGAAGACACCTAGACAGAGGCCAGCAGGGCTGTTGCAACCCTTGAGTGTGCTAGGATGGAAATGGGAGAGCATGTCAATGGACTTCATTACAGGACTGCCTAAGACTCTAAAGGGATATACAGTGATCTGGGTTGTTGTTGACAGACTCACGAAGTCAGCCCACTTTGTTCCAGGGAAATCCACTTACACTGCCAGTAAGTGGGGACAGTTATATATGACGGAGATAGTGAGACTGCATGGAATACCTGTATCCATCGTTTCGGACAGAGATGCTCGTTTCACATCGAAGTTCTGA

mRNA sequence

ATGAGACAGAGAAGATGGCTTGAGTTGGTGAAGGATTATGACTGTGAGATTCTGTACCACCCAGATAAGGCAAATGTAGTAGCTGATGCGTTGAGCAGGAAGGTTGCACATTCAGCAGCGCTTATCACAAAGCACGGCCCCTTACTCAGAGATTTCGAGAGAGCTGAGATTGCAGTCTCAGTAGGGGAAGTTACCTCACAGCTGGCTCAGTTGTCAGTGCAGTCGACCTTGCGACAGAGGATTATTGTCGCTCAGTTAAAGGATCCTTATCTGGTCGAGAAGCGTCGTTTGGTAGAGACAGGGCAAGGTGAGGTTTTCCCCATATCCTCTGACGAGGACCTTATGTTTGAGGGACGTTTGTGTGTGCCAGAAGACAGTGCAGTCAAGACAGAGCTTTTGACTGAGGCTCACAGTTCTCCATTTACTATGCACCCCGGAAGTACGAAGATGTACCAAGACTTGAGGTGTGTCTATTGGTGGAGGAACATGAAGAGAGAAGTGGCAGACTTTGTCAGTAGATGTTTGGTGTGCCAGCAGGTGAAGACACCTAGACAGAGGCCAGCAGGGCTGTTGCAACCCTTGAGTGTGCTAGGATGGAAATGGGAGAGCATGTCAATGGACTTCATTACAGGACTGCCTAAGACTCTAAAGGGATATACAGTGATCTGGGTTGTTGTTGACAGACTCACGAAGTCAGCCCACTTTGTTCCAGGGAAATCCACTTACACTGCCAGTAAGTGGGGACAGTTATATATGACGGAGATAGTGAGACTGCATGGAATACCTGTATCCATCGTTTCGGACAGAGATGCTCGTTTCACATCGAAGTTCTGA

Coding sequence (CDS)

ATGAGACAGAGAAGATGGCTTGAGTTGGTGAAGGATTATGACTGTGAGATTCTGTACCACCCAGATAAGGCAAATGTAGTAGCTGATGCGTTGAGCAGGAAGGTTGCACATTCAGCAGCGCTTATCACAAAGCACGGCCCCTTACTCAGAGATTTCGAGAGAGCTGAGATTGCAGTCTCAGTAGGGGAAGTTACCTCACAGCTGGCTCAGTTGTCAGTGCAGTCGACCTTGCGACAGAGGATTATTGTCGCTCAGTTAAAGGATCCTTATCTGGTCGAGAAGCGTCGTTTGGTAGAGACAGGGCAAGGTGAGGTTTTCCCCATATCCTCTGACGAGGACCTTATGTTTGAGGGACGTTTGTGTGTGCCAGAAGACAGTGCAGTCAAGACAGAGCTTTTGACTGAGGCTCACAGTTCTCCATTTACTATGCACCCCGGAAGTACGAAGATGTACCAAGACTTGAGGTGTGTCTATTGGTGGAGGAACATGAAGAGAGAAGTGGCAGACTTTGTCAGTAGATGTTTGGTGTGCCAGCAGGTGAAGACACCTAGACAGAGGCCAGCAGGGCTGTTGCAACCCTTGAGTGTGCTAGGATGGAAATGGGAGAGCATGTCAATGGACTTCATTACAGGACTGCCTAAGACTCTAAAGGGATATACAGTGATCTGGGTTGTTGTTGACAGACTCACGAAGTCAGCCCACTTTGTTCCAGGGAAATCCACTTACACTGCCAGTAAGTGGGGACAGTTATATATGACGGAGATAGTGAGACTGCATGGAATACCTGTATCCATCGTTTCGGACAGAGATGCTCGTTTCACATCGAAGTTCTGA

Protein sequence

MRQRRWLELVKDYDCEILYHPDKANVVADALSRKVAHSAALITKHGPLLRDFERAEIAVSVGEVTSQLAQLSVQSTLRQRIIVAQLKDPYLVEKRRLVETGQGEVFPISSDEDLMFEGRLCVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLRCVYWWRNMKREVADFVSRCLVCQQVKTPRQRPAGLLQPLSVLGWKWESMSMDFITGLPKTLKGYTVIWVVVDRLTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGIPVSIVSDRDARFTSKF

Homology

[Close]

BLAST of Cmc08g0224571 vs. NCBI nr
Match: TYK00135.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 563.9 bits (1452), Expect = 7.5e-157
Identity = 277/277 (100.00%), Postives = 277/277 (100.00%), Query Frame = 0


Query: 1   MRQRRWLELVKDYDCEILYHPDKANVVADALSRKVAHSAALITKHGPLLRDFERAEIAVS 60
           MRQRRWLELVKDYDCEILYHPDKANVVADALSRKVAHSAALITKHGPLLRDFERAEIAVS
Sbjct: 1   MRQRRWLELVKDYDCEILYHPDKANVVADALSRKVAHSAALITKHGPLLRDFERAEIAVS 60

Query: 61  VGEVTSQLAQLSVQSTLRQRIIVAQLKDPYLVEKRRLVETGQGEVFPISSDEDLMFEGRL 120
           VGEVTSQLAQLSVQSTLRQRIIVAQLKDPYLVEKRRLVETGQGEVFPISSDEDLMFEGRL
Sbjct: 61  VGEVTSQLAQLSVQSTLRQRIIVAQLKDPYLVEKRRLVETGQGEVFPISSDEDLMFEGRL 120

Query: 121 CVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLRCVYWWRNMKREVADFVSRCLVCQQV 180
           CVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLRCVYWWRNMKREVADFVSRCLVCQQV
Sbjct: 121 CVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLRCVYWWRNMKREVADFVSRCLVCQQV 180

Query: 181 KTPRQRPAGLLQPLSVLGWKWESMSMDFITGLPKTLKGYTVIWVVVDRLTKSAHFVPGKS 240
           KTPRQRPAGLLQPLSVLGWKWESMSMDFITGLPKTLKGYTVIWVVVDRLTKSAHFVPGKS
Sbjct: 181 KTPRQRPAGLLQPLSVLGWKWESMSMDFITGLPKTLKGYTVIWVVVDRLTKSAHFVPGKS 240

Query: 241 TYTASKWGQLYMTEIVRLHGIPVSIVSDRDARFTSKF 278
           TYTASKWGQLYMTEIVRLHGIPVSIVSDRDARFTSKF
Sbjct: 241 TYTASKWGQLYMTEIVRLHGIPVSIVSDRDARFTSKF 277

[Close]

BLAST of Cmc08g0224571 vs. NCBI nr
Match: KAA0053208.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 563.9 bits (1452), Expect = 7.5e-157
Identity = 277/277 (100.00%), Postives = 277/277 (100.00%), Query Frame = 0


Query: 1   MRQRRWLELVKDYDCEILYHPDKANVVADALSRKVAHSAALITKHGPLLRDFERAEIAVS 60
           MRQRRWLELVKDYDCEILYHPDKANVVADALSRKVAHSAALITKHGPLLRDFERAEIAVS
Sbjct: 1   MRQRRWLELVKDYDCEILYHPDKANVVADALSRKVAHSAALITKHGPLLRDFERAEIAVS 60

Query: 61  VGEVTSQLAQLSVQSTLRQRIIVAQLKDPYLVEKRRLVETGQGEVFPISSDEDLMFEGRL 120
           VGEVTSQLAQLSVQSTLRQRIIVAQLKDPYLVEKRRLVETGQGEVFPISSDEDLMFEGRL
Sbjct: 61  VGEVTSQLAQLSVQSTLRQRIIVAQLKDPYLVEKRRLVETGQGEVFPISSDEDLMFEGRL 120

Query: 121 CVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLRCVYWWRNMKREVADFVSRCLVCQQV 180
           CVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLRCVYWWRNMKREVADFVSRCLVCQQV
Sbjct: 121 CVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLRCVYWWRNMKREVADFVSRCLVCQQV 180

Query: 181 KTPRQRPAGLLQPLSVLGWKWESMSMDFITGLPKTLKGYTVIWVVVDRLTKSAHFVPGKS 240
           KTPRQRPAGLLQPLSVLGWKWESMSMDFITGLPKTLKGYTVIWVVVDRLTKSAHFVPGKS
Sbjct: 181 KTPRQRPAGLLQPLSVLGWKWESMSMDFITGLPKTLKGYTVIWVVVDRLTKSAHFVPGKS 240

Query: 241 TYTASKWGQLYMTEIVRLHGIPVSIVSDRDARFTSKF 278
           TYTASKWGQLYMTEIVRLHGIPVSIVSDRDARFTSKF
Sbjct: 241 TYTASKWGQLYMTEIVRLHGIPVSIVSDRDARFTSKF 277

[Close]

BLAST of Cmc08g0224571 vs. NCBI nr
Match: KAA0035204.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 523.1 bits (1346), Expect = 1.5e-144
Identity = 255/277 (92.06%), Postives = 265/277 (95.67%), Query Frame = 0


Query: 1    MRQRRWLELVKDYDCEILYHPDKANVVADALSRKVAHSAALITKHGPLLRDFERAEIAVS 60
            MRQRRWLELVKDYDCEILYHP KANVVADALSRKVAHSAALITK  PLLRDFERAEIAVS
Sbjct: 903  MRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITKQTPLLRDFERAEIAVS 962

Query: 61   VGEVTSQLAQLSVQSTLRQRIIVAQLKDPYLVEKRRLVETGQGEVFPISSDEDLMFEGRL 120
            VGEVT+QLAQLSVQ TLRQ+IIVAQL+DPYLVEKRR+VETGQGE F ISSD+ LMFEGRL
Sbjct: 963  VGEVTAQLAQLSVQPTLRQKIIVAQLEDPYLVEKRRMVETGQGENFSISSDDGLMFEGRL 1022

Query: 121  CVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLRCVYWWRNMKREVADFVSRCLVCQQV 180
            CVPEDS VKTELL+EAHSSPFTMHPGSTKMYQDLR VYWWRNMKREVADF+SRCLVCQQV
Sbjct: 1023 CVPEDSVVKTELLSEAHSSPFTMHPGSTKMYQDLRSVYWWRNMKREVADFISRCLVCQQV 1082

Query: 181  KTPRQRPAGLLQPLSVLGWKWESMSMDFITGLPKTLKGYTVIWVVVDRLTKSAHFVPGKS 240
            K PRQRPAGLLQPLSV GWKWES+SMDFITGLPKTLKGYTVIWVVVDRLTKSAHFVPGKS
Sbjct: 1083 KAPRQRPAGLLQPLSVPGWKWESVSMDFITGLPKTLKGYTVIWVVVDRLTKSAHFVPGKS 1142

Query: 241  TYTASKWGQLYMTEIVRLHGIPVSIVSDRDARFTSKF 278
            TYTASKWGQLYMTEIVRLHG+PVSI+SDRD RFTSKF
Sbjct: 1143 TYTASKWGQLYMTEIVRLHGVPVSIISDRDTRFTSKF 1179

[Close]

BLAST of Cmc08g0224571 vs. NCBI nr
Match: KAA0041490.1 (hypothetical protein E6C27_scaffold6G00780 [Cucumis melo var. makuwa])

HSP 1 Score: 522.7 bits (1345), Expect = 1.9e-144
Identity = 258/277 (93.14%), Postives = 262/277 (94.58%), Query Frame = 0


Query: 1    MRQRRWLELVKDYDCEILYHPDKANVVADALSRKVAHSAALITKHGPLLRDFERAEIAVS 60
            MR RRWLELVKDYDCEILYHP KANVVADALSRKVAHSAALITK  PLLRDFERAEIAVS
Sbjct: 729  MRHRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITKQAPLLRDFERAEIAVS 788

Query: 61   VGEVTSQLAQLSVQSTLRQRIIVAQLKDPYLVEKRRLVETGQGEVFPISSDEDLMFEGRL 120
            VGEVTSQLAQLSVQ TLRQRIIVAQL DPYLVEKRRLVETGQGE F IS D+ LMFEGRL
Sbjct: 789  VGEVTSQLAQLSVQPTLRQRIIVAQLNDPYLVEKRRLVETGQGEDFSISFDDGLMFEGRL 848

Query: 121  CVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLRCVYWWRNMKREVADFVSRCLVCQQV 180
            CVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLR VYWWRNMKREVADFVSRCLVCQQV
Sbjct: 849  CVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLRSVYWWRNMKREVADFVSRCLVCQQV 908

Query: 181  KTPRQRPAGLLQPLSVLGWKWESMSMDFITGLPKTLKGYTVIWVVVDRLTKSAHFVPGKS 240
            K PRQRPAGLLQPLSV GWKWES+SMDFITGLPKTLKGYTVIWVVVDRLTKSAHFV GKS
Sbjct: 909  KAPRQRPAGLLQPLSVPGWKWESVSMDFITGLPKTLKGYTVIWVVVDRLTKSAHFVSGKS 968

Query: 241  TYTASKWGQLYMTEIVRLHGIPVSIVSDRDARFTSKF 278
            TYTASKWGQLYMTEIVRLHG+PVSI+SDRD RFTSKF
Sbjct: 969  TYTASKWGQLYMTEIVRLHGVPVSIISDRDTRFTSKF 1005

[Close]

BLAST of Cmc08g0224571 vs. NCBI nr
Match: TYK24364.1 (putative polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 522.7 bits (1345), Expect = 1.9e-144
Identity = 258/277 (93.14%), Postives = 262/277 (94.58%), Query Frame = 0


Query: 1    MRQRRWLELVKDYDCEILYHPDKANVVADALSRKVAHSAALITKHGPLLRDFERAEIAVS 60
            MR RRWLELVKDYDCEILYHP KANVVADALSRKVAHSAALITK  PLLRDFERAEIAVS
Sbjct: 729  MRHRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITKQAPLLRDFERAEIAVS 788

Query: 61   VGEVTSQLAQLSVQSTLRQRIIVAQLKDPYLVEKRRLVETGQGEVFPISSDEDLMFEGRL 120
            VGEVTSQLAQLSVQ TLRQRIIVAQL DPYLVEKRRLVETGQGE F IS D+ LMFEGRL
Sbjct: 789  VGEVTSQLAQLSVQPTLRQRIIVAQLNDPYLVEKRRLVETGQGEDFSISFDDGLMFEGRL 848

Query: 121  CVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLRCVYWWRNMKREVADFVSRCLVCQQV 180
            CVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLR VYWWRNMKREVADFVSRCLVCQQV
Sbjct: 849  CVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLRSVYWWRNMKREVADFVSRCLVCQQV 908

Query: 181  KTPRQRPAGLLQPLSVLGWKWESMSMDFITGLPKTLKGYTVIWVVVDRLTKSAHFVPGKS 240
            K PRQRPAGLLQPLSV GWKWES+SMDFITGLPKTLKGYTVIWVVVDRLTKSAHFV GKS
Sbjct: 909  KAPRQRPAGLLQPLSVPGWKWESVSMDFITGLPKTLKGYTVIWVVVDRLTKSAHFVSGKS 968

Query: 241  TYTASKWGQLYMTEIVRLHGIPVSIVSDRDARFTSKF 278
            TYTASKWGQLYMTEIVRLHG+PVSI+SDRD RFTSKF
Sbjct: 969  TYTASKWGQLYMTEIVRLHGVPVSIISDRDTRFTSKF 1005

[Close]

BLAST of Cmc08g0224571 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 6.2e-29
Identity = 78/280 (27.86%), Postives = 142/280 (50.71%), Query Frame = 0


Query: 2    RQRRWLELVKDYDCEILYHPDKANVVADALSRKVAHSAALITKHGPLLRDFERAEIAVSV 61
            R  RW   ++D++ EI Y P  AN +ADALSR       ++ +  P+ +D E   I    
Sbjct: 800  RLARWQLFLQDFNFEINYRPGSANHIADALSR-------IVDETEPIPKDSEDNSI---- 859

Query: 62   GEVTSQLAQLSVQSTLRQRIIVAQLKDPYLV-----EKRRLVETGQGEVFPISSDEDLMF 121
                + + Q+S+    + +++     D  L+     E +R+ E  Q +   + + +D   
Sbjct: 860  ----NFVNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQLKDGLLINSKD--- 919

Query: 122  EGRLCVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLRCVYWWRNMKREVADFVSRCLV 181
              ++ +P D+ +   ++ + H     +HPG   +   +   + W+ +++++ ++V  C  
Sbjct: 920  --QILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHT 979

Query: 182  CQQVKTPRQRPAGLLQPLSVLGWKWESMSMDFITGLPKTLKGYTVIWVVVDRLTKSAHFV 241
            CQ  K+   +P G LQP+      WES+SMDFIT LP++  GY  ++VVVDR +K A  V
Sbjct: 980  CQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPES-SGYNALFVVVDRFSKMAILV 1039

Query: 242  PGKSTYTASKWGQLYMTEIVRLHGIPVSIVSDRDARFTSK 277
            P   + TA +  +++   ++   G P  I++D D  FTS+
Sbjct: 1040 PCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQ 1058

[Close]

BLAST of Cmc08g0224571 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 6.2e-29
Identity = 78/280 (27.86%), Postives = 142/280 (50.71%), Query Frame = 0


Query: 2    RQRRWLELVKDYDCEILYHPDKANVVADALSRKVAHSAALITKHGPLLRDFERAEIAVSV 61
            R  RW   ++D++ EI Y P  AN +ADALSR       ++ +  P+ +D E   I    
Sbjct: 800  RLARWQLFLQDFNFEINYRPGSANHIADALSR-------IVDETEPIPKDSEDNSI---- 859

Query: 62   GEVTSQLAQLSVQSTLRQRIIVAQLKDPYLV-----EKRRLVETGQGEVFPISSDEDLMF 121
                + + Q+S+    + +++     D  L+     E +R+ E  Q +   + + +D   
Sbjct: 860  ----NFVNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQLKDGLLINSKD--- 919

Query: 122  EGRLCVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLRCVYWWRNMKREVADFVSRCLV 181
              ++ +P D+ +   ++ + H     +HPG   +   +   + W+ +++++ ++V  C  
Sbjct: 920  --QILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHT 979

Query: 182  CQQVKTPRQRPAGLLQPLSVLGWKWESMSMDFITGLPKTLKGYTVIWVVVDRLTKSAHFV 241
            CQ  K+   +P G LQP+      WES+SMDFIT LP++  GY  ++VVVDR +K A  V
Sbjct: 980  CQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPES-SGYNALFVVVDRFSKMAILV 1039

Query: 242  PGKSTYTASKWGQLYMTEIVRLHGIPVSIVSDRDARFTSK 277
            P   + TA +  +++   ++   G P  I++D D  FTS+
Sbjct: 1040 PCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQ 1058

[Close]

BLAST of Cmc08g0224571 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 6.2e-29
Identity = 78/280 (27.86%), Postives = 142/280 (50.71%), Query Frame = 0


Query: 2    RQRRWLELVKDYDCEILYHPDKANVVADALSRKVAHSAALITKHGPLLRDFERAEIAVSV 61
            R  RW   ++D++ EI Y P  AN +ADALSR       ++ +  P+ +D E   I    
Sbjct: 800  RLARWQLFLQDFNFEINYRPGSANHIADALSR-------IVDETEPIPKDSEDNSI---- 859

Query: 62   GEVTSQLAQLSVQSTLRQRIIVAQLKDPYLV-----EKRRLVETGQGEVFPISSDEDLMF 121
                + + Q+S+    + +++     D  L+     E +R+ E  Q +   + + +D   
Sbjct: 860  ----NFVNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQLKDGLLINSKD--- 919

Query: 122  EGRLCVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLRCVYWWRNMKREVADFVSRCLV 181
              ++ +P D+ +   ++ + H     +HPG   +   +   + W+ +++++ ++V  C  
Sbjct: 920  --QILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHT 979

Query: 182  CQQVKTPRQRPAGLLQPLSVLGWKWESMSMDFITGLPKTLKGYTVIWVVVDRLTKSAHFV 241
            CQ  K+   +P G LQP+      WES+SMDFIT LP++  GY  ++VVVDR +K A  V
Sbjct: 980  CQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPES-SGYNALFVVVDRFSKMAILV 1039

Query: 242  PGKSTYTASKWGQLYMTEIVRLHGIPVSIVSDRDARFTSK 277
            P   + TA +  +++   ++   G P  I++D D  FTS+
Sbjct: 1040 PCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQ 1058

[Close]

BLAST of Cmc08g0224571 vs. ExPASy Swiss-Prot
Match: P0CT35 (Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-2 PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 6.2e-29
Identity = 78/280 (27.86%), Postives = 142/280 (50.71%), Query Frame = 0


Query: 2    RQRRWLELVKDYDCEILYHPDKANVVADALSRKVAHSAALITKHGPLLRDFERAEIAVSV 61
            R  RW   ++D++ EI Y P  AN +ADALSR       ++ +  P+ +D E   I    
Sbjct: 800  RLARWQLFLQDFNFEINYRPGSANHIADALSR-------IVDETEPIPKDSEDNSI---- 859

Query: 62   GEVTSQLAQLSVQSTLRQRIIVAQLKDPYLV-----EKRRLVETGQGEVFPISSDEDLMF 121
                + + Q+S+    + +++     D  L+     E +R+ E  Q +   + + +D   
Sbjct: 860  ----NFVNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQLKDGLLINSKD--- 919

Query: 122  EGRLCVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLRCVYWWRNMKREVADFVSRCLV 181
              ++ +P D+ +   ++ + H     +HPG   +   +   + W+ +++++ ++V  C  
Sbjct: 920  --QILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHT 979

Query: 182  CQQVKTPRQRPAGLLQPLSVLGWKWESMSMDFITGLPKTLKGYTVIWVVVDRLTKSAHFV 241
            CQ  K+   +P G LQP+      WES+SMDFIT LP++  GY  ++VVVDR +K A  V
Sbjct: 980  CQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPES-SGYNALFVVVDRFSKMAILV 1039

Query: 242  PGKSTYTASKWGQLYMTEIVRLHGIPVSIVSDRDARFTSK 277
            P   + TA +  +++   ++   G P  I++D D  FTS+
Sbjct: 1040 PCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQ 1058

[Close]

BLAST of Cmc08g0224571 vs. ExPASy Swiss-Prot
Match: P0CT36 (Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-3 PE=1 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 6.2e-29
Identity = 78/280 (27.86%), Postives = 142/280 (50.71%), Query Frame = 0


Query: 2    RQRRWLELVKDYDCEILYHPDKANVVADALSRKVAHSAALITKHGPLLRDFERAEIAVSV 61
            R  RW   ++D++ EI Y P  AN +ADALSR       ++ +  P+ +D E   I    
Sbjct: 800  RLARWQLFLQDFNFEINYRPGSANHIADALSR-------IVDETEPIPKDSEDNSI---- 859

Query: 62   GEVTSQLAQLSVQSTLRQRIIVAQLKDPYLV-----EKRRLVETGQGEVFPISSDEDLMF 121
                + + Q+S+    + +++     D  L+     E +R+ E  Q +   + + +D   
Sbjct: 860  ----NFVNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQLKDGLLINSKD--- 919

Query: 122  EGRLCVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLRCVYWWRNMKREVADFVSRCLV 181
              ++ +P D+ +   ++ + H     +HPG   +   +   + W+ +++++ ++V  C  
Sbjct: 920  --QILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHT 979

Query: 182  CQQVKTPRQRPAGLLQPLSVLGWKWESMSMDFITGLPKTLKGYTVIWVVVDRLTKSAHFV 241
            CQ  K+   +P G LQP+      WES+SMDFIT LP++  GY  ++VVVDR +K A  V
Sbjct: 980  CQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPES-SGYNALFVVVDRFSKMAILV 1039

Query: 242  PGKSTYTASKWGQLYMTEIVRLHGIPVSIVSDRDARFTSK 277
            P   + TA +  +++   ++   G P  I++D D  FTS+
Sbjct: 1040 PCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQ 1058

[Close]

BLAST of Cmc08g0224571 vs. ExPASy TrEMBL
Match: A0A5A7UDI5 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1192G00350 PE=4 SV=1)

HSP 1 Score: 563.9 bits (1452), Expect = 3.7e-157
Identity = 277/277 (100.00%), Postives = 277/277 (100.00%), Query Frame = 0


Query: 1   MRQRRWLELVKDYDCEILYHPDKANVVADALSRKVAHSAALITKHGPLLRDFERAEIAVS 60
           MRQRRWLELVKDYDCEILYHPDKANVVADALSRKVAHSAALITKHGPLLRDFERAEIAVS
Sbjct: 1   MRQRRWLELVKDYDCEILYHPDKANVVADALSRKVAHSAALITKHGPLLRDFERAEIAVS 60

Query: 61  VGEVTSQLAQLSVQSTLRQRIIVAQLKDPYLVEKRRLVETGQGEVFPISSDEDLMFEGRL 120
           VGEVTSQLAQLSVQSTLRQRIIVAQLKDPYLVEKRRLVETGQGEVFPISSDEDLMFEGRL
Sbjct: 61  VGEVTSQLAQLSVQSTLRQRIIVAQLKDPYLVEKRRLVETGQGEVFPISSDEDLMFEGRL 120

Query: 121 CVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLRCVYWWRNMKREVADFVSRCLVCQQV 180
           CVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLRCVYWWRNMKREVADFVSRCLVCQQV
Sbjct: 121 CVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLRCVYWWRNMKREVADFVSRCLVCQQV 180

Query: 181 KTPRQRPAGLLQPLSVLGWKWESMSMDFITGLPKTLKGYTVIWVVVDRLTKSAHFVPGKS 240
           KTPRQRPAGLLQPLSVLGWKWESMSMDFITGLPKTLKGYTVIWVVVDRLTKSAHFVPGKS
Sbjct: 181 KTPRQRPAGLLQPLSVLGWKWESMSMDFITGLPKTLKGYTVIWVVVDRLTKSAHFVPGKS 240

Query: 241 TYTASKWGQLYMTEIVRLHGIPVSIVSDRDARFTSKF 278
           TYTASKWGQLYMTEIVRLHGIPVSIVSDRDARFTSKF
Sbjct: 241 TYTASKWGQLYMTEIVRLHGIPVSIVSDRDARFTSKF 277

[Close]

BLAST of Cmc08g0224571 vs. ExPASy TrEMBL
Match: A0A5D3BM42 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2510G00210 PE=4 SV=1)

HSP 1 Score: 563.9 bits (1452), Expect = 3.7e-157
Identity = 277/277 (100.00%), Postives = 277/277 (100.00%), Query Frame = 0


Query: 1   MRQRRWLELVKDYDCEILYHPDKANVVADALSRKVAHSAALITKHGPLLRDFERAEIAVS 60
           MRQRRWLELVKDYDCEILYHPDKANVVADALSRKVAHSAALITKHGPLLRDFERAEIAVS
Sbjct: 1   MRQRRWLELVKDYDCEILYHPDKANVVADALSRKVAHSAALITKHGPLLRDFERAEIAVS 60

Query: 61  VGEVTSQLAQLSVQSTLRQRIIVAQLKDPYLVEKRRLVETGQGEVFPISSDEDLMFEGRL 120
           VGEVTSQLAQLSVQSTLRQRIIVAQLKDPYLVEKRRLVETGQGEVFPISSDEDLMFEGRL
Sbjct: 61  VGEVTSQLAQLSVQSTLRQRIIVAQLKDPYLVEKRRLVETGQGEVFPISSDEDLMFEGRL 120

Query: 121 CVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLRCVYWWRNMKREVADFVSRCLVCQQV 180
           CVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLRCVYWWRNMKREVADFVSRCLVCQQV
Sbjct: 121 CVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLRCVYWWRNMKREVADFVSRCLVCQQV 180

Query: 181 KTPRQRPAGLLQPLSVLGWKWESMSMDFITGLPKTLKGYTVIWVVVDRLTKSAHFVPGKS 240
           KTPRQRPAGLLQPLSVLGWKWESMSMDFITGLPKTLKGYTVIWVVVDRLTKSAHFVPGKS
Sbjct: 181 KTPRQRPAGLLQPLSVLGWKWESMSMDFITGLPKTLKGYTVIWVVVDRLTKSAHFVPGKS 240

Query: 241 TYTASKWGQLYMTEIVRLHGIPVSIVSDRDARFTSKF 278
           TYTASKWGQLYMTEIVRLHGIPVSIVSDRDARFTSKF
Sbjct: 241 TYTASKWGQLYMTEIVRLHGIPVSIVSDRDARFTSKF 277

[Close]

BLAST of Cmc08g0224571 vs. ExPASy TrEMBL
Match: A0A5A7SVA8 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold346G00290 PE=4 SV=1)

HSP 1 Score: 523.1 bits (1346), Expect = 7.1e-145
Identity = 255/277 (92.06%), Postives = 265/277 (95.67%), Query Frame = 0


Query: 1    MRQRRWLELVKDYDCEILYHPDKANVVADALSRKVAHSAALITKHGPLLRDFERAEIAVS 60
            MRQRRWLELVKDYDCEILYHP KANVVADALSRKVAHSAALITK  PLLRDFERAEIAVS
Sbjct: 903  MRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITKQTPLLRDFERAEIAVS 962

Query: 61   VGEVTSQLAQLSVQSTLRQRIIVAQLKDPYLVEKRRLVETGQGEVFPISSDEDLMFEGRL 120
            VGEVT+QLAQLSVQ TLRQ+IIVAQL+DPYLVEKRR+VETGQGE F ISSD+ LMFEGRL
Sbjct: 963  VGEVTAQLAQLSVQPTLRQKIIVAQLEDPYLVEKRRMVETGQGENFSISSDDGLMFEGRL 1022

Query: 121  CVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLRCVYWWRNMKREVADFVSRCLVCQQV 180
            CVPEDS VKTELL+EAHSSPFTMHPGSTKMYQDLR VYWWRNMKREVADF+SRCLVCQQV
Sbjct: 1023 CVPEDSVVKTELLSEAHSSPFTMHPGSTKMYQDLRSVYWWRNMKREVADFISRCLVCQQV 1082

Query: 181  KTPRQRPAGLLQPLSVLGWKWESMSMDFITGLPKTLKGYTVIWVVVDRLTKSAHFVPGKS 240
            K PRQRPAGLLQPLSV GWKWES+SMDFITGLPKTLKGYTVIWVVVDRLTKSAHFVPGKS
Sbjct: 1083 KAPRQRPAGLLQPLSVPGWKWESVSMDFITGLPKTLKGYTVIWVVVDRLTKSAHFVPGKS 1142

Query: 241  TYTASKWGQLYMTEIVRLHGIPVSIVSDRDARFTSKF 278
            TYTASKWGQLYMTEIVRLHG+PVSI+SDRD RFTSKF
Sbjct: 1143 TYTASKWGQLYMTEIVRLHGVPVSIISDRDTRFTSKF 1179

[Close]

BLAST of Cmc08g0224571 vs. ExPASy TrEMBL
Match: A0A5A7TDX1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold6G00780 PE=4 SV=1)

HSP 1 Score: 522.7 bits (1345), Expect = 9.3e-145
Identity = 258/277 (93.14%), Postives = 262/277 (94.58%), Query Frame = 0


Query: 1    MRQRRWLELVKDYDCEILYHPDKANVVADALSRKVAHSAALITKHGPLLRDFERAEIAVS 60
            MR RRWLELVKDYDCEILYHP KANVVADALSRKVAHSAALITK  PLLRDFERAEIAVS
Sbjct: 729  MRHRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITKQAPLLRDFERAEIAVS 788

Query: 61   VGEVTSQLAQLSVQSTLRQRIIVAQLKDPYLVEKRRLVETGQGEVFPISSDEDLMFEGRL 120
            VGEVTSQLAQLSVQ TLRQRIIVAQL DPYLVEKRRLVETGQGE F IS D+ LMFEGRL
Sbjct: 789  VGEVTSQLAQLSVQPTLRQRIIVAQLNDPYLVEKRRLVETGQGEDFSISFDDGLMFEGRL 848

Query: 121  CVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLRCVYWWRNMKREVADFVSRCLVCQQV 180
            CVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLR VYWWRNMKREVADFVSRCLVCQQV
Sbjct: 849  CVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLRSVYWWRNMKREVADFVSRCLVCQQV 908

Query: 181  KTPRQRPAGLLQPLSVLGWKWESMSMDFITGLPKTLKGYTVIWVVVDRLTKSAHFVPGKS 240
            K PRQRPAGLLQPLSV GWKWES+SMDFITGLPKTLKGYTVIWVVVDRLTKSAHFV GKS
Sbjct: 909  KAPRQRPAGLLQPLSVPGWKWESVSMDFITGLPKTLKGYTVIWVVVDRLTKSAHFVSGKS 968

Query: 241  TYTASKWGQLYMTEIVRLHGIPVSIVSDRDARFTSKF 278
            TYTASKWGQLYMTEIVRLHG+PVSI+SDRD RFTSKF
Sbjct: 969  TYTASKWGQLYMTEIVRLHGVPVSIISDRDTRFTSKF 1005

[Close]

BLAST of Cmc08g0224571 vs. ExPASy TrEMBL
Match: A0A5D3DL91 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G001470 PE=4 SV=1)

HSP 1 Score: 522.7 bits (1345), Expect = 9.3e-145
Identity = 258/277 (93.14%), Postives = 262/277 (94.58%), Query Frame = 0


Query: 1    MRQRRWLELVKDYDCEILYHPDKANVVADALSRKVAHSAALITKHGPLLRDFERAEIAVS 60
            MR RRWLELVKDYDCEILYHP KANVVADALSRKVAHSAALITK  PLLRDFERAEIAVS
Sbjct: 729  MRHRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITKQAPLLRDFERAEIAVS 788

Query: 61   VGEVTSQLAQLSVQSTLRQRIIVAQLKDPYLVEKRRLVETGQGEVFPISSDEDLMFEGRL 120
            VGEVTSQLAQLSVQ TLRQRIIVAQL DPYLVEKRRLVETGQGE F IS D+ LMFEGRL
Sbjct: 789  VGEVTSQLAQLSVQPTLRQRIIVAQLNDPYLVEKRRLVETGQGEDFSISFDDGLMFEGRL 848

Query: 121  CVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLRCVYWWRNMKREVADFVSRCLVCQQV 180
            CVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLR VYWWRNMKREVADFVSRCLVCQQV
Sbjct: 849  CVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLRSVYWWRNMKREVADFVSRCLVCQQV 908

Query: 181  KTPRQRPAGLLQPLSVLGWKWESMSMDFITGLPKTLKGYTVIWVVVDRLTKSAHFVPGKS 240
            K PRQRPAGLLQPLSV GWKWES+SMDFITGLPKTLKGYTVIWVVVDRLTKSAHFV GKS
Sbjct: 909  KAPRQRPAGLLQPLSVPGWKWESVSMDFITGLPKTLKGYTVIWVVVDRLTKSAHFVSGKS 968

Query: 241  TYTASKWGQLYMTEIVRLHGIPVSIVSDRDARFTSKF 278
            TYTASKWGQLYMTEIVRLHG+PVSI+SDRD RFTSKF
Sbjct: 969  TYTASKWGQLYMTEIVRLHGVPVSIISDRDTRFTSKF 1005

The following BLAST results are available for this feature:

BLAST of Cmc08g0224571 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK00135.1	7.5e-157	100.00	pol protein [Cucumis melo var. makuwa]	[more]
KAA0053208.1	7.5e-157	100.00	pol protein [Cucumis melo var. makuwa]	[more]
KAA0035204.1	1.5e-144	92.06	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0041490.1	1.9e-144	93.14	hypothetical protein E6C27_scaffold6G00780 [Cucumis melo var. makuwa]	[more]
TYK24364.1	1.9e-144	93.14	putative polyprotein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc08g0224571 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9UR07	6.2e-29	27.86	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT41	6.2e-29	27.86	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	6.2e-29	27.86	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT35	6.2e-29	27.86	Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT36	6.2e-29	27.86	Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Cmc08g0224571 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UDI5	3.7e-157	100.00	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1192G00350 P...	[more]
A0A5D3BM42	3.7e-157	100.00	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2510G00210 P...	[more]
A0A5A7SVA8	7.1e-145	92.06	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34...	[more]
A0A5A7TDX1	9.3e-145	93.14	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold6G...	[more]
A0A5D3DL91	9.3e-145	93.14	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold20...	[more]

BLAST of Cmc08g0224571 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR041588	Integrase zinc-binding domain	PFAM	PF17921	Integrase_H2C2	coord: 126..182 e-value: 4.5E-17 score: 61.9
None	No IPR available	GENE3D	1.10.340.70		coord: 84..181 e-value: 5.5E-18 score: 67.0
None	No IPR available	PANTHER	PTHR45835	YALI0A06105P	coord: 2..277
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 196..277 e-value: 3.0E-14 score: 54.7
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 189..277 score: 9.162528
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 196..276

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0224571.1	Cmc08g0224571.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding