Cmc08g0224561 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0224561
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr08: 14796137 .. 14796601 (+)
RNA-Seq Expression	Cmc08g0224561
Synteny	Cmc08g0224561

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGTTTGTGAAGAAGAAGGATGGGTCGATGCGCCTTTGCATTGACTACAGAGAGCTGAACAAGGTGACAGTCAAGAACTGTTACCCCTTGCCTAGAATTGATGACTTGTTCGATCAGTTACAGGGAGCCACCGTCTTTTCTAAGATCGACCTGCCATCAAGCTATCACCAGTTGAGGATCAGGGATAGTGATATTCCTAAGACAGCTTTCCGTTCCAGATACGGGCACTACGAGTTCATCGTGATGTCCTTTAGTTTGACTAATGCTCCTGCGATATTCATGGACTTGATGAACAAGATATTTAAGGATTTCTTAGACACGTTTGTCATAGTTTTCATTGACGACATTTTGATTTACTCCAAGACTGAGGCCGAGCACGAGGAGCATTTGCACCCGGTGTTTTGGAGACTCTTCGAGCCAATAAGATGTATGCCAAGTTCTCCAAGTGTGAGTTCTGGCTGA

mRNA sequence

ATGTTGTTTGTGAAGAAGAAGGATGGGTCGATGCGCCTTTGCATTGACTACAGAGAGCTGAACAAGGTGACAGTCAAGAACTGTTACCCCTTGCCTAGAATTGATGACTTGTTCGATCAGTTACAGGGAGCCACCGTCTTTTCTAAGATCGACCTGCCATCAAGCTATCACCAGTTGAGGATCAGGGATAGTGATATTCCTAAGACAGCTTTCCGTTCCAGATACGGGCACTACGAGTTCATCGTGATGTCCTTTAGTTTGACTAATGCTCCTGCGATATTCATGGACTTGATGAACAAGATATTTAAGGATTTCTTAGACACGTTTGTCATAGTTTTCATTGACGACATTTTGATTTACTCCAAGACTGAGGCCGAGCACGAGGAGCATTTGCACCCGGTGTTTTGGAGACTCTTCGAGCCAATAAGATGTATGCCAAGTTCTCCAAGTGTGAGTTCTGGCTGA

Coding sequence (CDS)

ATGTTGTTTGTGAAGAAGAAGGATGGGTCGATGCGCCTTTGCATTGACTACAGAGAGCTGAACAAGGTGACAGTCAAGAACTGTTACCCCTTGCCTAGAATTGATGACTTGTTCGATCAGTTACAGGGAGCCACCGTCTTTTCTAAGATCGACCTGCCATCAAGCTATCACCAGTTGAGGATCAGGGATAGTGATATTCCTAAGACAGCTTTCCGTTCCAGATACGGGCACTACGAGTTCATCGTGATGTCCTTTAGTTTGACTAATGCTCCTGCGATATTCATGGACTTGATGAACAAGATATTTAAGGATTTCTTAGACACGTTTGTCATAGTTTTCATTGACGACATTTTGATTTACTCCAAGACTGAGGCCGAGCACGAGGAGCATTTGCACCCGGTGTTTTGGAGACTCTTCGAGCCAATAAGATGTATGCCAAGTTCTCCAAGTGTGAGTTCTGGCTGA

Protein sequence

MLFVKKKDGSMRLCIDYRELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLPSSYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFSLTNAPAIFMDLMNKIFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHPVFWRLFEPIRCMPSSPSVSSG

Homology

[Close]

BLAST of Cmc08g0224561 vs. NCBI nr
Match: TYK07218.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 263.8 bits (673), Expect = 9.0e-67
Identity = 126/142 (88.73%), Postives = 134/142 (94.37%), Query Frame = 0


Query: 1   MLFVKKKDGSMRLCIDYRELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLPSSYHQLR 60
           +LFVKKKDGSMRLCIDYRELNKVT+KNCYPLPRIDDLFDQLQGATVFSKIDL S YHQLR
Sbjct: 465 VLFVKKKDGSMRLCIDYRELNKVTIKNCYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLR 524

Query: 61  IRDSDIPKTAFRSRYGHYEFIVMSFSLTNAPAIFMDLMNKIFKDFLDTFVIVFIDDILIY 120
           IRDSDIPKT FRSRYGHYEFIVMSF LT+APA+F+DLM ++FKDFLD+FVIVFIDDILIY
Sbjct: 525 IRDSDIPKTTFRSRYGHYEFIVMSFGLTDAPAVFLDLMKRVFKDFLDSFVIVFIDDILIY 584

Query: 121 SKTEAEHEEHLHPVFWRLFEPI 143
           SKTEAEHEEH H  FWRLFEPI
Sbjct: 585 SKTEAEHEEHFHK-FWRLFEPI 605

[Close]

BLAST of Cmc08g0224561 vs. NCBI nr
Match: KAA0058528.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 263.8 bits (673), Expect = 9.0e-67
Identity = 126/142 (88.73%), Postives = 134/142 (94.37%), Query Frame = 0


Query: 1   MLFVKKKDGSMRLCIDYRELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLPSSYHQLR 60
           +LFVKKKDGSMRLCIDYRELNKVT+KNCYPLPRIDDLFDQLQGATVFSKIDL S YHQLR
Sbjct: 465 VLFVKKKDGSMRLCIDYRELNKVTIKNCYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLR 524

Query: 61  IRDSDIPKTAFRSRYGHYEFIVMSFSLTNAPAIFMDLMNKIFKDFLDTFVIVFIDDILIY 120
           IRDSDIPKT FRSRYGHYEFIVMSF LT+APA+F+DLM ++FKDFLD+FVIVFIDDILIY
Sbjct: 525 IRDSDIPKTTFRSRYGHYEFIVMSFGLTDAPAVFLDLMKRVFKDFLDSFVIVFIDDILIY 584

Query: 121 SKTEAEHEEHLHPVFWRLFEPI 143
           SKTEAEHEEH H  FWRLFEPI
Sbjct: 585 SKTEAEHEEHFHK-FWRLFEPI 605

[Close]

BLAST of Cmc08g0224561 vs. NCBI nr
Match: KAA0033486.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 259.6 bits (662), Expect = 1.7e-65
Identity = 124/134 (92.54%), Postives = 130/134 (97.01%), Query Frame = 0


Query: 1   MLFVKKKDGSMRLCIDYRELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLPSSYHQLR 60
           +LFVKKKDGSMRLCIDYRELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDL S YHQLR
Sbjct: 631 VLFVKKKDGSMRLCIDYRELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLR 690

Query: 61  IRDSDIPKTAFRSRYGHYEFIVMSFSLTNAPAIFMDLMNKIFKDFLDTFVIVFIDDILIY 120
           IRDSDIPKTAFRSRYGHYEF+VMSF LTNAPA+FMDLMN++FKDFLD+FVIVFIDDILIY
Sbjct: 691 IRDSDIPKTAFRSRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIY 750

Query: 121 SKTEAEHEEHLHPV 135
           SKTEAEHEEHLH V
Sbjct: 751 SKTEAEHEEHLHQV 764

[Close]

BLAST of Cmc08g0224561 vs. NCBI nr
Match: KAA0032248.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 258.5 bits (659), Expect = 3.8e-65
Identity = 124/134 (92.54%), Postives = 129/134 (96.27%), Query Frame = 0


Query: 1   MLFVKKKDGSMRLCIDYRELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLPSSYHQLR 60
           +LFVKKKDGSMRLCIDYRELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDL S YHQLR
Sbjct: 440 VLFVKKKDGSMRLCIDYRELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLWSGYHQLR 499

Query: 61  IRDSDIPKTAFRSRYGHYEFIVMSFSLTNAPAIFMDLMNKIFKDFLDTFVIVFIDDILIY 120
           IRD DIPKTAFRSRYGHYEF+VMSF LTNAPA+FMDLMNK+FKDFLD+FVIVFIDDILIY
Sbjct: 500 IRDGDIPKTAFRSRYGHYEFVVMSFGLTNAPAVFMDLMNKVFKDFLDSFVIVFIDDILIY 559

Query: 121 SKTEAEHEEHLHPV 135
           SKTEAEHEEHLH V
Sbjct: 560 SKTEAEHEEHLHQV 573

[Close]

BLAST of Cmc08g0224561 vs. NCBI nr
Match: KAA0051719.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 256.1 bits (653), Expect = 1.9e-64
Identity = 123/134 (91.79%), Postives = 128/134 (95.52%), Query Frame = 0


Query: 1   MLFVKKKDGSMRLCIDYRELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLPSSYHQLR 60
           +LFVKKKDGSMRLCIDYRELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDL S YHQLR
Sbjct: 591 VLFVKKKDGSMRLCIDYRELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLR 650

Query: 61  IRDSDIPKTAFRSRYGHYEFIVMSFSLTNAPAIFMDLMNKIFKDFLDTFVIVFIDDILIY 120
            RDSDIPKTAFR RYGHYEFIVMSF LTNAPA+FMDLMN++FKDFLD+FVIVFIDDILIY
Sbjct: 651 FRDSDIPKTAFRLRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIY 710

Query: 121 SKTEAEHEEHLHPV 135
           SKTEAEHEEHLH V
Sbjct: 711 SKTEAEHEEHLHQV 724

[Close]

BLAST of Cmc08g0224561 vs. ExPASy Swiss-Prot
Match: P31843 (RNA-directed DNA polymerase homolog OS=Oenothera berteroana OX=3950 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 8.8e-33
Identity = 70/128 (54.69%), Postives = 92/128 (71.88%), Query Frame = 0


Query: 10  SMRLCIDYRELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLPSSYHQLRIRDSDIPKT 69
           S+R+CIDYR L KVT+KN YP+PR+DDLFD+L  AT F+K+DL S Y Q+RI   D PKT
Sbjct: 5   SLRMCIDYRALTKVTIKNKYPIPRVDDLFDRLAQATWFTKLDLRSGYWQVRIAKGDEPKT 64

Query: 70  AFRSRYGHYEFIVMSFSLTNAPAIFMDLMNKIFKDFLDTFVIVFIDDIL---IYSKTEAE 129
              +RYG +EF VM F LTNA A F +LMN +  ++LD FV+V++DD++   IYS +  E
Sbjct: 65  TCVTRYGSFEFRVMPFGLTNALATFCNLMNNVLYEYLDHFVVVYLDDLVVYTIYSNSLHE 124

Query: 130 HEEHLHPV 135
           H +HL  V
Sbjct: 125 HIKHLRVV 132

[Close]

BLAST of Cmc08g0224561 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 9.1e-30
Identity = 59/138 (42.75%), Postives = 96/138 (69.57%), Query Frame = 0


Query: 1   MLFVKKKDGSMRLCIDYRELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLPSSYHQLR 60
           ++FV KK+G++R+ +DY+ LNK    N YPLP I+ L  ++QG+T+F+K+DL S+YH +R
Sbjct: 452 VMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIR 511

Query: 61  IRDSDIPKTAFRSRYGHYEFIVMSFSLTNAPAIFMDLMNKIFKDFLDTFVIVFIDDILIY 120
           +R  D  K AFR   G +E++VM + ++ APA F   +N I  +  ++ V+ ++DDILI+
Sbjct: 512 VRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIH 571

Query: 121 SKTEAEHEEHLHPVFWRL 139
           SK+E+EH +H+  V  +L
Sbjct: 572 SKSESEHVKHVKDVLQKL 589

[Close]

BLAST of Cmc08g0224561 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 9.1e-30
Identity = 59/138 (42.75%), Postives = 96/138 (69.57%), Query Frame = 0


Query: 1   MLFVKKKDGSMRLCIDYRELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLPSSYHQLR 60
           ++FV KK+G++R+ +DY+ LNK    N YPLP I+ L  ++QG+T+F+K+DL S+YH +R
Sbjct: 452 VMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIR 511

Query: 61  IRDSDIPKTAFRSRYGHYEFIVMSFSLTNAPAIFMDLMNKIFKDFLDTFVIVFIDDILIY 120
           +R  D  K AFR   G +E++VM + ++ APA F   +N I  +  ++ V+ ++DDILI+
Sbjct: 512 VRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIH 571

Query: 121 SKTEAEHEEHLHPVFWRL 139
           SK+E+EH +H+  V  +L
Sbjct: 572 SKSESEHVKHVKDVLQKL 589

[Close]

BLAST of Cmc08g0224561 vs. ExPASy Swiss-Prot
Match: P0CT35 (Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-2 PE=3 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 9.1e-30
Identity = 59/138 (42.75%), Postives = 96/138 (69.57%), Query Frame = 0


Query: 1   MLFVKKKDGSMRLCIDYRELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLPSSYHQLR 60
           ++FV KK+G++R+ +DY+ LNK    N YPLP I+ L  ++QG+T+F+K+DL S+YH +R
Sbjct: 452 VMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIR 511

Query: 61  IRDSDIPKTAFRSRYGHYEFIVMSFSLTNAPAIFMDLMNKIFKDFLDTFVIVFIDDILIY 120
           +R  D  K AFR   G +E++VM + ++ APA F   +N I  +  ++ V+ ++DDILI+
Sbjct: 512 VRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIH 571

Query: 121 SKTEAEHEEHLHPVFWRL 139
           SK+E+EH +H+  V  +L
Sbjct: 572 SKSESEHVKHVKDVLQKL 589

[Close]

BLAST of Cmc08g0224561 vs. ExPASy Swiss-Prot
Match: P0CT36 (Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-3 PE=1 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 9.1e-30
Identity = 59/138 (42.75%), Postives = 96/138 (69.57%), Query Frame = 0


Query: 1   MLFVKKKDGSMRLCIDYRELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLPSSYHQLR 60
           ++FV KK+G++R+ +DY+ LNK    N YPLP I+ L  ++QG+T+F+K+DL S+YH +R
Sbjct: 452 VMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIR 511

Query: 61  IRDSDIPKTAFRSRYGHYEFIVMSFSLTNAPAIFMDLMNKIFKDFLDTFVIVFIDDILIY 120
           +R  D  K AFR   G +E++VM + ++ APA F   +N I  +  ++ V+ ++DDILI+
Sbjct: 512 VRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIH 571

Query: 121 SKTEAEHEEHLHPVFWRL 139
           SK+E+EH +H+  V  +L
Sbjct: 572 SKSESEHVKHVKDVLQKL 589

[Close]

BLAST of Cmc08g0224561 vs. ExPASy TrEMBL
Match: A0A5A7UTP4 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold132G001270 PE=4 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 4.3e-67
Identity = 126/142 (88.73%), Postives = 134/142 (94.37%), Query Frame = 0


Query: 1   MLFVKKKDGSMRLCIDYRELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLPSSYHQLR 60
           +LFVKKKDGSMRLCIDYRELNKVT+KNCYPLPRIDDLFDQLQGATVFSKIDL S YHQLR
Sbjct: 465 VLFVKKKDGSMRLCIDYRELNKVTIKNCYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLR 524

Query: 61  IRDSDIPKTAFRSRYGHYEFIVMSFSLTNAPAIFMDLMNKIFKDFLDTFVIVFIDDILIY 120
           IRDSDIPKT FRSRYGHYEFIVMSF LT+APA+F+DLM ++FKDFLD+FVIVFIDDILIY
Sbjct: 525 IRDSDIPKTTFRSRYGHYEFIVMSFGLTDAPAVFLDLMKRVFKDFLDSFVIVFIDDILIY 584

Query: 121 SKTEAEHEEHLHPVFWRLFEPI 143
           SKTEAEHEEH H  FWRLFEPI
Sbjct: 585 SKTEAEHEEHFHK-FWRLFEPI 605

[Close]

BLAST of Cmc08g0224561 vs. ExPASy TrEMBL
Match: A0A5D3C7T1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold606G001060 PE=4 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 4.3e-67
Identity = 126/142 (88.73%), Postives = 134/142 (94.37%), Query Frame = 0


Query: 1   MLFVKKKDGSMRLCIDYRELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLPSSYHQLR 60
           +LFVKKKDGSMRLCIDYRELNKVT+KNCYPLPRIDDLFDQLQGATVFSKIDL S YHQLR
Sbjct: 465 VLFVKKKDGSMRLCIDYRELNKVTIKNCYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLR 524

Query: 61  IRDSDIPKTAFRSRYGHYEFIVMSFSLTNAPAIFMDLMNKIFKDFLDTFVIVFIDDILIY 120
           IRDSDIPKT FRSRYGHYEFIVMSF LT+APA+F+DLM ++FKDFLD+FVIVFIDDILIY
Sbjct: 525 IRDSDIPKTTFRSRYGHYEFIVMSFGLTDAPAVFLDLMKRVFKDFLDSFVIVFIDDILIY 584

Query: 121 SKTEAEHEEHLHPVFWRLFEPI 143
           SKTEAEHEEH H  FWRLFEPI
Sbjct: 585 SKTEAEHEEHFHK-FWRLFEPI 605

[Close]

BLAST of Cmc08g0224561 vs. ExPASy TrEMBL
Match: A0A5A7SU25 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold261G00200 PE=4 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 8.2e-66
Identity = 124/134 (92.54%), Postives = 130/134 (97.01%), Query Frame = 0


Query: 1   MLFVKKKDGSMRLCIDYRELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLPSSYHQLR 60
           +LFVKKKDGSMRLCIDYRELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDL S YHQLR
Sbjct: 631 VLFVKKKDGSMRLCIDYRELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLR 690

Query: 61  IRDSDIPKTAFRSRYGHYEFIVMSFSLTNAPAIFMDLMNKIFKDFLDTFVIVFIDDILIY 120
           IRDSDIPKTAFRSRYGHYEF+VMSF LTNAPA+FMDLMN++FKDFLD+FVIVFIDDILIY
Sbjct: 691 IRDSDIPKTAFRSRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIY 750

Query: 121 SKTEAEHEEHLHPV 135
           SKTEAEHEEHLH V
Sbjct: 751 SKTEAEHEEHLHQV 764

[Close]

BLAST of Cmc08g0224561 vs. ExPASy TrEMBL
Match: A0A5A7SNR3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G00790 PE=4 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 1.8e-65
Identity = 124/134 (92.54%), Postives = 129/134 (96.27%), Query Frame = 0


Query: 1   MLFVKKKDGSMRLCIDYRELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLPSSYHQLR 60
           +LFVKKKDGSMRLCIDYRELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDL S YHQLR
Sbjct: 440 VLFVKKKDGSMRLCIDYRELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLWSGYHQLR 499

Query: 61  IRDSDIPKTAFRSRYGHYEFIVMSFSLTNAPAIFMDLMNKIFKDFLDTFVIVFIDDILIY 120
           IRD DIPKTAFRSRYGHYEF+VMSF LTNAPA+FMDLMNK+FKDFLD+FVIVFIDDILIY
Sbjct: 500 IRDGDIPKTAFRSRYGHYEFVVMSFGLTNAPAVFMDLMNKVFKDFLDSFVIVFIDDILIY 559

Query: 121 SKTEAEHEEHLHPV 135
           SKTEAEHEEHLH V
Sbjct: 560 SKTEAEHEEHLHQV 573

[Close]

BLAST of Cmc08g0224561 vs. ExPASy TrEMBL
Match: A0A5A7UE01 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G001050 PE=4 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 9.1e-65
Identity = 123/134 (91.79%), Postives = 128/134 (95.52%), Query Frame = 0


Query: 1   MLFVKKKDGSMRLCIDYRELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLPSSYHQLR 60
           +LFVKKKDGSMRLCIDYRELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDL S YHQLR
Sbjct: 591 VLFVKKKDGSMRLCIDYRELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLR 650

Query: 61  IRDSDIPKTAFRSRYGHYEFIVMSFSLTNAPAIFMDLMNKIFKDFLDTFVIVFIDDILIY 120
            RDSDIPKTAFR RYGHYEFIVMSF LTNAPA+FMDLMN++FKDFLD+FVIVFIDDILIY
Sbjct: 651 FRDSDIPKTAFRLRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIY 710

Query: 121 SKTEAEHEEHLHPV 135
           SKTEAEHEEHLH V
Sbjct: 711 SKTEAEHEEHLHQV 724

The following BLAST results are available for this feature:

BLAST of Cmc08g0224561 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK07218.1	9.0e-67	88.73	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0058528.1	9.0e-67	88.73	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0033486.1	1.7e-65	92.54	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0032248.1	3.8e-65	92.54	pol protein [Cucumis melo var. makuwa]	[more]
KAA0051719.1	1.9e-64	91.79	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc08g0224561 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P31843	8.8e-33	54.69	RNA-directed DNA polymerase homolog OS=Oenothera berteroana OX=3950 PE=4 SV=1	[more]
P0CT41	9.1e-30	42.75	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	9.1e-30	42.75	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT35	9.1e-30	42.75	Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT36	9.1e-30	42.75	Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Cmc08g0224561 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UTP4	4.3e-67	88.73	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13...	[more]
A0A5D3C7T1	4.3e-67	88.73	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold60...	[more]
A0A5A7SU25	8.2e-66	92.54	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold26...	[more]
A0A5A7SNR3	1.8e-65	92.54	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21...	[more]
A0A5A7UE01	9.1e-65	91.79	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60...	[more]

BLAST of Cmc08g0224561 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 29..138 e-value: 3.0E-58 score: 198.6
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 1..89 e-value: 3.0E-58 score: 198.6
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 5..138
None	No IPR available	PANTHER	PTHR24559:SF324	TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 5..138
None	No IPR available	CDD	cd01647	RT_LTR	coord: 1..140 e-value: 1.81252E-71 score: 210.915
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 4..134 e-value: 1.4E-18 score: 67.2
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 2..140

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0224561.1	Cmc08g0224561.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding