Cmc08g0224481 (gene) Melon (Charmono) v1.1

Overview
NameCmc08g0224481
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionCarbon catabolite repressor protein 4-like protein 1-like
LocationCMiso1.1chr08: 14612643 .. 14614492 (+)
RNA-Seq ExpressionCmc08g0224481
SyntenyCmc08g0224481
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAAATAAAGGCGCGAAAAAGAAACCCTTGACTTCGTTACCATCCGAATGTTTTACGCATTACACTTTTCTGACCCCAAATCACCATTTTTATTTTTTTTTCAAATTTTCCACAAATTTCCTTCTCTCACAGATCCCTCCCCCGATTTTCCTCTTCTCGCAGACCCCTCCCTCGACTTCGTTACCACCCGAATGTCATCGCCAACTCGCCACACCAGATAGGTAACGTTCTTTTAAGGTTTTCTTCTTTTGACTTAACCTTTCGTCTCTTCCTTTTCTTTTCCTTTCACTTTTTAGTAGGTTTAATCTACTATTTTTTGTTCTTTTGAACCGCAAATGGAAGATCTGCCAGGAATTCGCTTTCTTGATGCCTTTTCTGGTTTTCGTGAAGCTGCGAGTGTTTTCGATTTCTCTTATATGTCGTGTTGTGTCGATTGACAAGAGTAAAGTATGTTGAGCGTGGTACGCGTGCACTTGCCTTCTGATATTCCTATTGTACGCTACGAACTTACACCCTACGTTCTCTATTGCTACCCTGATAAGAACATCGATACTGATGATGTATCTGAGTCGGCTCCTCTTAATGGTCAATTTTTGAGATACAGATGGTAAGTTCCTAGTGGTCATTGTGGAATTTCAATTGGTTCTCTTCTCTTTTTGTGTTATTCTTGTCTATTGGTTGTTTACTACTCTACAGTGTCGACTGTTGGTCGTTGTAACTCAATTGGATATGTTTGGGGTTTAGTGGTTTCTTCTTTAACTTCAAACTTTTTTTGGTGCTACTCTTGAGACAGATTGTGTCAAAATGACTATATGTTTTTTTTTTTTTTTTTTACTGTGGCATGGTGAGATTAATTTCTAAACACCTTTTCTGCTGTTATCTCTCCTATATTCCTAATATTAGGATAAATGGTCATGATTACGATTTATGAATGTAGCAAATAATATGAGTGAAATTCTCAGCTTGATTATATAAATATGTCAATGGTTGTATTCTACTTGGTCGTATTTTATAACATGTCGAAAGGTGTTACTACTCTTTTATTATTTGGACTTGTTTTCTTCCCCCAGATCTAGGTTCGCTTTGCTGTTTTGATTTATGTTTCTGGCTTTGGACTTGTTTTCTGGATTTAAATTTGGATTTCATGTTGCCATATGCTTGTACTTGATGAAAATGGGCGTTTATTGTTGTGGTTGAATAGGTATAATTGTTTTATTTCATGTTTTGGTTTTTTTGGCACAGTATAATATTGATCAAGCATGGCAGAAAAATACTTCCTAAAGAAGATGGGTGGGTTATGGGATCATGTGATTTTTAGTTGTTTTTAGTTTTTAGTTTTTAGAATTTATAAGGGCTGTAGACAACGGTGATGCTGATGAAGATCACCGCCCCTCTGTTTATTGAAAGAGGGGAAAACAGAGTATAACAAAATAAAGAAAGAGAAAGAGAAGAAATTAGAGTCTCAAGAGATTTTCGAGGTGCCATTCAATGGAACATTCGATAGTGAAAGCAAGAAAAGAAGAGGAAGATCATAAGTTGTGTAATCCTGGCAATAGTTGTGGGTTTTCAGAGCTTTATGAATCTAATGATCGATCAAACTTACCGAAGCTGTCATGATCGAATTTATTCACTTTGATTCTTCTCTTCTTCAGTTTATCAGTTTCGTTGTGATGTATGGAGTTTTCTAAAACAACGTAGTTTTTTCTTTAGGTTTGTTCTCAAATAATTTTTTTCTTTTATAAACAAAATTATAATGCATAGAAGATAACATATATTCTTCAATGAGATATTATATGTATAGTTCTATGGTAATTTTTCTTTGAATAATGTGATTATGAAAAATGTTGATG

mRNA sequence

GAAAATAAAGGCGCGAAAAAGAAACCCTTGACTTCGTTACCATCCGAATGTTTTACGCATTACACTTTTCTGACCCCAAATCACCATTTTTATTTTTTTTTCAAATTTTCCACAAATTTCCTTCTCTCACAGATCCCTCCCCCGATTTTCCTCTTCTCGCAGACCCCTCCCTCGACTTCGTTACCACCCGAATGTCATCGCCAACTCGCCACACCAGATAGATCTGCCAGGAATTCGCTTTCTTGATGCCTTTTCTGGTTTTCGTGAAGCTGCGAGTGTTTTCGATTTCTCTTATATGTCGTGTTGTGTCGATTGACAAGAGTAAAGTATGTTGAGCGTGGTACGCGTGCACTTGCCTTCTGATATTCCTATTGTACGCTACGAACTTACACCCTACGTTCTCTATTGCTACCCTGATAAGAACATCGATACTGATGATGTATCTGAGTCGGCTCCTCTTAATGGTCAATTTTTGAGATACAGATGTATAATATTGATCAAGCATGGCAGAAAAATACTTCCTAAAGAAGATGGGTGGGTTATGGGATCATGTGATTTTTAGTTGTTTTTAGTTTTTAGTTTTTAGAATTTATAAGGGCTGTAGACAACGGTGATGCTGATGAAGATCACCGCCCCTCTGTTTATTGAAAGAGGGGAAAACAGAGTATAACAAAATAAAGAAAGAGAAAGAGAAGAAATTAGAGTCTCAAGAGATTTTCGAGGTGCCATTCAATGGAACATTCGATAGTGAAAGCAAGAAAAGAAGAGGAAGATCATAAGTTGTGTAATCCTGGCAATAGTTGTGGGTTTTCAGAGCTTTATGAATCTAATGATCGATCAAACTTACCGAAGCTGTCATGATCGAATTTATTCACTTTGATTCTTCTCTTCTTCAGTTTATCAGTTTCGTTGTGATGTATGGAGTTTTCTAAAACAACGTAGTTTTTTCTTTAGGTTTGTTCTCAAATAATTTTTTTCTTTTATAAACAAAATTATAATGCATAGAAGATAACATATATTCTTCAATGAGATATTATATGTATAGTTCTATGGTAATTTTTCTTTGAATAATGTGATTATGAAAAATGTTGATG

Coding sequence (CDS)

ATGTTGAGCGTGGTACGCGTGCACTTGCCTTCTGATATTCCTATTGTACGCTACGAACTTACACCCTACGTTCTCTATTGCTACCCTGATAAGAACATCGATACTGATGATGTATCTGAGTCGGCTCCTCTTAATGGTCAATTTTTGAGATACAGATGTATAATATTGATCAAGCATGGCAGAAAAATACTTCCTAAAGAAGATGGGTGGGTTATGGGATCATGTGATTTTTAG

Protein sequence

MLSVVRVHLPSDIPIVRYELTPYVLYCYPDKNIDTDDVSESAPLNGQFLRYRCIILIKHGRKILPKEDGWVMGSCDF
Homology
[Close]
BLAST of Cmc08g0224481 vs. NCBI nr
Match: KAA0033174.1 (carbon catabolite repressor protein 4-like protein 1-like [Cucumis melo var. makuwa] >TYK15364.1 carbon catabolite repressor protein 4-like protein 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 116.7 bits (291), Expect = 8.9e-23
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 0 

Query: 1  MLSVVRVHLPSDIPIVRYELTPYVLYCYPDKNIDTDDVSESAPLNGQFLRYRCI 55
          MLSVVRVHLPSDIPIVRYELTPYVLYCYPDKNIDTDDVSESAPLNGQFLRYRC+
Sbjct: 1  MLSVVRVHLPSDIPIVRYELTPYVLYCYPDKNIDTDDVSESAPLNGQFLRYRCV 54

[Close]
BLAST of Cmc08g0224481 vs. NCBI nr
Match: XP_022151398.1 (carbon catabolite repressor protein 4 homolog 1-like [Momordica charantia] >XP_022151399.1 carbon catabolite repressor protein 4 homolog 1-like [Momordica charantia] >XP_022151400.1 carbon catabolite repressor protein 4 homolog 1-like [Momordica charantia] >XP_022151401.1 carbon catabolite repressor protein 4 homolog 1-like [Momordica charantia])

HSP 1 Score: 91.7 bits (226), Expect = 3.1e-15
Identity = 45/52 (86.54%), Postives = 48/52 (92.31%), Query Frame = 0 

Query: 1  MLSVVRVHLPSDIPIVRYELTPYVLYCYPDKNIDTDDVSESAPLNGQFLRYR 53
          MLSVVRVHLPSDIPIV  ELTPYVL+  PDKNI+TDDVSESAPL+GQFLRYR
Sbjct: 1  MLSVVRVHLPSDIPIVGCELTPYVLHRRPDKNINTDDVSESAPLDGQFLRYR 52

[Close]
BLAST of Cmc08g0224481 vs. NCBI nr
Match: XP_038904077.1 (carbon catabolite repressor protein 4 homolog 1-like [Benincasa hispida] >XP_038904078.1 carbon catabolite repressor protein 4 homolog 1-like [Benincasa hispida] >XP_038904079.1 carbon catabolite repressor protein 4 homolog 1-like [Benincasa hispida] >XP_038904080.1 carbon catabolite repressor protein 4 homolog 1-like [Benincasa hispida])

HSP 1 Score: 91.3 bits (225), Expect = 4.0e-15
Identity = 45/52 (86.54%), Postives = 47/52 (90.38%), Query Frame = 0 

Query: 1  MLSVVRVHLPSDIPIVRYELTPYVLYCYPDKNIDTDDVSESAPLNGQFLRYR 53
          MLSVVRVHLPSDIPIV  ELTPYVL+  PDKNI TDDVSESAPL+GQFLRYR
Sbjct: 1  MLSVVRVHLPSDIPIVGCELTPYVLHRRPDKNISTDDVSESAPLDGQFLRYR 52

[Close]
BLAST of Cmc08g0224481 vs. NCBI nr
Match: KAE8651127.1 (hypothetical protein Csa_002360 [Cucumis sativus])

HSP 1 Score: 91.3 bits (225), Expect = 4.0e-15
Identity = 45/52 (86.54%), Postives = 47/52 (90.38%), Query Frame = 0 

Query: 1  MLSVVRVHLPSDIPIVRYELTPYVLYCYPDKNIDTDDVSESAPLNGQFLRYR 53
          MLSVVRVHLPSDIPIV  ELTPYVL+  PDKNI TDDVSESAPL+GQFLRYR
Sbjct: 1  MLSVVRVHLPSDIPIVGCELTPYVLHRRPDKNISTDDVSESAPLDGQFLRYR 52

[Close]
BLAST of Cmc08g0224481 vs. NCBI nr
Match: KAE8645782.1 (hypothetical protein Csa_017169 [Cucumis sativus])

HSP 1 Score: 91.3 bits (225), Expect = 4.0e-15
Identity = 45/52 (86.54%), Postives = 47/52 (90.38%), Query Frame = 0 

Query: 1  MLSVVRVHLPSDIPIVRYELTPYVLYCYPDKNIDTDDVSESAPLNGQFLRYR 53
          MLSVVRVHLPSDIPIV  ELTPYVL+  PDKNI TDDVSESAPL+GQFLRYR
Sbjct: 1  MLSVVRVHLPSDIPIVGCELTPYVLHRRPDKNISTDDVSESAPLDGQFLRYR 52

[Close]
BLAST of Cmc08g0224481 vs. ExPASy Swiss-Prot
Match: Q9M2F8 (Carbon catabolite repressor protein 4 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=CCR4-2 PE=2 SV=2)

HSP 1 Score: 80.9 bits (198), Expect = 7.1e-15
Identity = 40/52 (76.92%), Postives = 42/52 (80.77%), Query Frame = 0 

Query: 1  MLSVVRVHLPSDIPIVRYELTPYVLYCYPDKNIDTDDVSESAPLNGQFLRYR 53
          MLSV+RVHLPS+IPIV  ELTPYVL   PDKN  TDDV ESAPL G FLRYR
Sbjct: 1  MLSVIRVHLPSEIPIVGCELTPYVLVRRPDKNSTTDDVPESAPLEGYFLRYR 52

[Close]
BLAST of Cmc08g0224481 vs. ExPASy Swiss-Prot
Match: Q8W0Z9 (Carbon catabolite repressor protein 4 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=CCR4-1 PE=2 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 6.0e-14
Identity = 38/52 (73.08%), Postives = 41/52 (78.85%), Query Frame = 0 

Query: 1  MLSVVRVHLPSDIPIVRYELTPYVLYCYPDKNIDTDDVSESAPLNGQFLRYR 53
          MLSV+RVHLPS+IPIV  ELTPYVL   PDK   TDDV ESAPL G FL+YR
Sbjct: 1  MLSVIRVHLPSEIPIVGCELTPYVLLRRPDKTPSTDDVPESAPLEGHFLKYR 52

[Close]
BLAST of Cmc08g0224481 vs. ExPASy TrEMBL
Match: A0A5A7SPM9 (Carbon catabolite repressor protein 4-like protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold5393G00120 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 4.3e-23
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 0 

Query: 1  MLSVVRVHLPSDIPIVRYELTPYVLYCYPDKNIDTDDVSESAPLNGQFLRYRCI 55
          MLSVVRVHLPSDIPIVRYELTPYVLYCYPDKNIDTDDVSESAPLNGQFLRYRC+
Sbjct: 1  MLSVVRVHLPSDIPIVRYELTPYVLYCYPDKNIDTDDVSESAPLNGQFLRYRCV 54

[Close]
BLAST of Cmc08g0224481 vs. ExPASy TrEMBL
Match: A0A6J1DCZ0 (carbon catabolite repressor protein 4 homolog 1-like OS=Momordica charantia OX=3673 GN=LOC111019342 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.5e-15
Identity = 45/52 (86.54%), Postives = 48/52 (92.31%), Query Frame = 0 

Query: 1  MLSVVRVHLPSDIPIVRYELTPYVLYCYPDKNIDTDDVSESAPLNGQFLRYR 53
          MLSVVRVHLPSDIPIV  ELTPYVL+  PDKNI+TDDVSESAPL+GQFLRYR
Sbjct: 1  MLSVVRVHLPSDIPIVGCELTPYVLHRRPDKNINTDDVSESAPLDGQFLRYR 52

[Close]
BLAST of Cmc08g0224481 vs. ExPASy TrEMBL
Match: A0A1S3B722 (carbon catabolite repressor protein 4 homolog 1-like OS=Cucumis melo OX=3656 GN=LOC103486740 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.9e-15
Identity = 45/52 (86.54%), Postives = 47/52 (90.38%), Query Frame = 0 

Query: 1  MLSVVRVHLPSDIPIVRYELTPYVLYCYPDKNIDTDDVSESAPLNGQFLRYR 53
          MLSVVRVHLPSDIPIV  ELTPYVL+  PDKNI TDDVSESAPL+GQFLRYR
Sbjct: 1  MLSVVRVHLPSDIPIVGCELTPYVLHRRPDKNISTDDVSESAPLDGQFLRYR 52

[Close]
BLAST of Cmc08g0224481 vs. ExPASy TrEMBL
Match: A0A0A0LB77 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G797590 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.9e-15
Identity = 45/52 (86.54%), Postives = 47/52 (90.38%), Query Frame = 0 

Query: 1  MLSVVRVHLPSDIPIVRYELTPYVLYCYPDKNIDTDDVSESAPLNGQFLRYR 53
          MLSVVRVHLPSDIPIV  ELTPYVL+  PDKNI TDDVSESAPL+GQFLRYR
Sbjct: 1  MLSVVRVHLPSDIPIVGCELTPYVLHRRPDKNISTDDVSESAPLDGQFLRYR 52

[Close]
BLAST of Cmc08g0224481 vs. ExPASy TrEMBL
Match: A0A6J1IXT3 (carbon catabolite repressor protein 4 homolog 1-like OS=Cucurbita maxima OX=3661 GN=LOC111481600 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 3.3e-15
Identity = 44/52 (84.62%), Postives = 47/52 (90.38%), Query Frame = 0 

Query: 1  MLSVVRVHLPSDIPIVRYELTPYVLYCYPDKNIDTDDVSESAPLNGQFLRYR 53
          MLSVVRVHLPSDIPIV  ELTPYVL+  PDKNI TDDVSESAP++GQFLRYR
Sbjct: 1  MLSVVRVHLPSDIPIVGCELTPYVLHRRPDKNISTDDVSESAPIDGQFLRYR 52

[Close]
BLAST of Cmc08g0224481 vs. TAIR 10
Match: AT3G58580.1 (DNAse I-like superfamily protein )

HSP 1 Score: 80.9 bits (198), Expect = 5.0e-16
Identity = 40/52 (76.92%), Postives = 42/52 (80.77%), Query Frame = 0 

Query: 1  MLSVVRVHLPSDIPIVRYELTPYVLYCYPDKNIDTDDVSESAPLNGQFLRYR 53
          MLSV+RVHLPS+IPIV  ELTPYVL   PDKN  TDDV ESAPL G FLRYR
Sbjct: 1  MLSVIRVHLPSEIPIVGCELTPYVLVRRPDKNSTTDDVPESAPLEGYFLRYR 52

[Close]
BLAST of Cmc08g0224481 vs. TAIR 10
Match: AT3G58560.1 (DNAse I-like superfamily protein )

HSP 1 Score: 77.8 bits (190), Expect = 4.2e-15
Identity = 38/52 (73.08%), Postives = 41/52 (78.85%), Query Frame = 0 

Query: 1  MLSVVRVHLPSDIPIVRYELTPYVLYCYPDKNIDTDDVSESAPLNGQFLRYR 53
          MLSV+RVHLPS+IPIV  ELTPYVL   PDK   TDDV ESAPL G FL+YR
Sbjct: 1  MLSVIRVHLPSEIPIVGCELTPYVLLRRPDKTPSTDDVPESAPLEGHFLKYR 52

The following BLAST results are available for this feature:
BLAST of Cmc08g0224481 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0033174.18.9e-2398.15carbon catabolite repressor protein 4-like protein 1-like [Cucumis melo var. mak... [more]
XP_022151398.13.1e-1586.54carbon catabolite repressor protein 4 homolog 1-like [Momordica charantia] >XP_0... [more]
XP_038904077.14.0e-1586.54carbon catabolite repressor protein 4 homolog 1-like [Benincasa hispida] >XP_038... [more]
KAE8651127.14.0e-1586.54hypothetical protein Csa_002360 [Cucumis sativus][more]
KAE8645782.14.0e-1586.54hypothetical protein Csa_017169 [Cucumis sativus][more]
BLAST of Cmc08g0224481 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9M2F87.1e-1576.92Carbon catabolite repressor protein 4 homolog 2 OS=Arabidopsis thaliana OX=3702 ... [more]
Q8W0Z96.0e-1473.08Carbon catabolite repressor protein 4 homolog 1 OS=Arabidopsis thaliana OX=3702 ... [more]
BLAST of Cmc08g0224481 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7SPM94.3e-2398.15Carbon catabolite repressor protein 4-like protein 1-like OS=Cucumis melo var. m... [more]
A0A6J1DCZ01.5e-1586.54carbon catabolite repressor protein 4 homolog 1-like OS=Momordica charantia OX=3... [more]
A0A1S3B7221.9e-1586.54carbon catabolite repressor protein 4 homolog 1-like OS=Cucumis melo OX=3656 GN=... [more]
A0A0A0LB771.9e-1586.54Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G797590 PE=4 SV=1[more]
A0A6J1IXT33.3e-1584.62carbon catabolite repressor protein 4 homolog 1-like OS=Cucurbita maxima OX=3661... [more]
BLAST of Cmc08g0224481 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G58580.15.0e-1676.92DNAse I-like superfamily protein [more]
AT3G58560.14.2e-1573.08DNAse I-like superfamily protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc08g0224481.1Cmc08g0224481.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000289 nuclear-transcribed mRNA poly(A) tail shortening
biological_process GO:0090503 RNA phosphodiester bond hydrolysis, exonucleolytic
cellular_component GO:0030014 CCR4-NOT complex
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005634 nucleus
molecular_function GO:0004519 endonuclease activity
molecular_function GO:0004535 poly(A)-specific ribonuclease activity