Cmc08g0224021 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0224021
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr08: 13809756 .. 13810061 (-)
RNA-Seq Expression	Cmc08g0224021
Synteny	Cmc08g0224021

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTAACATTCCTTATGCTTCTGCTGTTGGGAGCCAGATGTATGCAATGTTATGTACTAGACATGACATTTGCTATTCAGTAGGGATAGTTAGTAGATATCAGTCCAATCCTGGACGCGATCATTGGACAGCTGTTAAGAATATTCTAAAATATTTTAGAAGAACAAAAGACTACATGCTTGTGTATGGTTCTAAGGATCTGATTCTTACTGGATACACTGACTCTGATTTTCCATCTGATAAAGATGCTAGAAAGTCTACATCGAGATCACTTTTCACTCTGAATGGAGGAGTAGTAGTGTGA

mRNA sequence

ATGAGTAACATTCCTTATGCTTCTGCTGTTGGGAGCCAGATGTATGCAATGTTATGTACTAGACATGACATTTGCTATTCAGTAGGGATAGTTAGTAGATATCAGTCCAATCCTGGACGCGATCATTGGACAGCTGTTAAGAATATTCTAAAATATTTTAGAAGAACAAAAGACTACATGCTTGTGTATGGTTCTAAGGATCTGATTCTTACTGGATACACTGACTCTGATTTTCCATCTGATAAAGATGCTAGAAAGTCTACATCGAGATCACTTTTCACTCTGAATGGAGGAGTAGTAGTGTGA

Coding sequence (CDS)

ATGAGTAACATTCCTTATGCTTCTGCTGTTGGGAGCCAGATGTATGCAATGTTATGTACTAGACATGACATTTGCTATTCAGTAGGGATAGTTAGTAGATATCAGTCCAATCCTGGACGCGATCATTGGACAGCTGTTAAGAATATTCTAAAATATTTTAGAAGAACAAAAGACTACATGCTTGTGTATGGTTCTAAGGATCTGATTCTTACTGGATACACTGACTCTGATTTTCCATCTGATAAAGATGCTAGAAAGTCTACATCGAGATCACTTTTCACTCTGAATGGAGGAGTAGTAGTGTGA

Protein sequence

MSNIPYASAVGSQMYAMLCTRHDICYSVGIVSRYQSNPGRDHWTAVKNILKYFRRTKDYMLVYGSKDLILTGYTDSDFPSDKDARKSTSRSLFTLNGGVVV

Homology

[Close]

BLAST of Cmc08g0224021 vs. NCBI nr
Match: TYK29751.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 209.9 bits (533), Expect = 1.0e-50
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0


Query: 1   MSNIPYASAVGSQMYAMLCTRHDICYSVGIVSRYQSNPGRDHWTAVKNILKYFRRTKDYM 60
           MSNIPYASAVGSQMYAMLCTRHDICYSVGIVSRYQSNPGRDHWTAVKNILKYFRRTKDYM
Sbjct: 1   MSNIPYASAVGSQMYAMLCTRHDICYSVGIVSRYQSNPGRDHWTAVKNILKYFRRTKDYM 60

Query: 61  LVYGSKDLILTGYTDSDFPSDKDARKSTSRSLFTLNGGVVV 102
           LVYGSKDLILTGYTDSDFPSDKDARKSTSRSLFTLNGGVVV
Sbjct: 61  LVYGSKDLILTGYTDSDFPSDKDARKSTSRSLFTLNGGVVV 101

[Close]

BLAST of Cmc08g0224021 vs. NCBI nr
Match: KAA0043610.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 209.9 bits (533), Expect = 1.0e-50
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0


Query: 1   MSNIPYASAVGSQMYAMLCTRHDICYSVGIVSRYQSNPGRDHWTAVKNILKYFRRTKDYM 60
           MSNIPYASAVGSQMYAMLCTRHDICYSVGIVSRYQSNPGRDHWTAVKNILKYFRRTKDYM
Sbjct: 242 MSNIPYASAVGSQMYAMLCTRHDICYSVGIVSRYQSNPGRDHWTAVKNILKYFRRTKDYM 301

Query: 61  LVYGSKDLILTGYTDSDFPSDKDARKSTSRSLFTLNGGVVV 102
           LVYGSKDLILTGYTDSDFPSDKDARKSTSRSLFTLNGGVVV
Sbjct: 302 LVYGSKDLILTGYTDSDFPSDKDARKSTSRSLFTLNGGVVV 342

[Close]

BLAST of Cmc08g0224021 vs. NCBI nr
Match: KAA0062116.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 188.0 bits (476), Expect = 4.1e-44
Identity = 91/101 (90.10%), Postives = 93/101 (92.08%), Query Frame = 0


Query: 1   MSNIPYASAVGSQMYAMLCTRHDICYSVGIVSRYQSNPGRDHWTAVKNILKYFRRTKDYM 60
           MSNIPYASAVGS MYAMLCTR DICYSVGIV RYQSNPGRDHWT VKNILKY RRTKDYM
Sbjct: 19  MSNIPYASAVGSLMYAMLCTRPDICYSVGIVIRYQSNPGRDHWTTVKNILKYLRRTKDYM 78

Query: 61  LVYGSKDLILTGYTDSDFPSDKDARKSTSRSLFTLNGGVVV 102
           LVYGSKDLIL GYTDSDF +DKDARKSTSRS+FTLNGG VV
Sbjct: 79  LVYGSKDLILIGYTDSDFQTDKDARKSTSRSVFTLNGGAVV 119

[Close]

BLAST of Cmc08g0224021 vs. NCBI nr
Match: TYK11050.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 186.8 bits (473), Expect = 9.1e-44
Identity = 90/101 (89.11%), Postives = 94/101 (93.07%), Query Frame = 0


Query: 1   MSNIPYASAVGSQMYAMLCTRHDICYSVGIVSRYQSNPGRDHWTAVKNILKYFRRTKDYM 60
           MSNIPYASA+GS MYAMLCTR DICYSVGIV+RYQSNPGRDHWTAVKNILKY RRTKDYM
Sbjct: 168 MSNIPYASAIGSLMYAMLCTRVDICYSVGIVNRYQSNPGRDHWTAVKNILKYLRRTKDYM 227

Query: 61  LVYGSKDLILTGYTDSDFPSDKDARKSTSRSLFTLNGGVVV 102
           LVYGSKDLILTGYTDSDF +DKDARKSTS S+FTLN G VV
Sbjct: 228 LVYGSKDLILTGYTDSDFQTDKDARKSTSGSIFTLNEGAVV 268

[Close]

BLAST of Cmc08g0224021 vs. NCBI nr
Match: KAA0032045.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK16865.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 186.4 bits (472), Expect = 1.2e-43
Identity = 90/101 (89.11%), Postives = 94/101 (93.07%), Query Frame = 0


Query: 1   MSNIPYASAVGSQMYAMLCTRHDICYSVGIVSRYQSNPGRDHWTAVKNILKYFRRTKDYM 60
           MSNIPYASA+GS MYAMLCTR DICYSVGIVS Y SNPGRDHWT+VKNILKY RRTKDYM
Sbjct: 38  MSNIPYASAIGSLMYAMLCTRPDICYSVGIVSTYLSNPGRDHWTSVKNILKYLRRTKDYM 97

Query: 61  LVYGSKDLILTGYTDSDFPSDKDARKSTSRSLFTLNGGVVV 102
           LVYGSKDLILTGYTDSDF +DKDARKSTS S+FTLNGGVVV
Sbjct: 98  LVYGSKDLILTGYTDSDFQTDKDARKSTSGSVFTLNGGVVV 138

[Close]

BLAST of Cmc08g0224021 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 5.2e-26
Identity = 55/100 (55.00%), Postives = 72/100 (72.00%), Query Frame = 0


Query: 1    MSNIPYASAVGSQMYAMLCTRHDICYSVGIVSRYQSNPGRDHWTAVKNILKYFRRTKDYM 60
            M+ +PY+SAVGS MYAM+CTR DI ++VG+VSR+  NPG++HW AVK IL+Y R T    
Sbjct: 1106 MAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDC 1165

Query: 61   LVYGSKDLILTGYTDSDFPSDKDARKSTSRSLFTLNGGVV 101
            L +G  D IL GYTD+D   D D RKS++  LFT +GG +
Sbjct: 1166 LCFGGSDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAI 1205

[Close]

BLAST of Cmc08g0224021 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 2.4e-18
Identity = 45/101 (44.55%), Postives = 67/101 (66.34%), Query Frame = 0


Query: 1   MSNIPYASAVGSQMYAMLCTRHDICYSVGIVSRYQSNPGRDHWTAVKNILKYFRRTKDYM 60
           M N+PY SAVG+ MY M+ TR D+  +VG++S++ S+P   HW A+K +L+Y + T+ Y 
Sbjct: 1   MKNVPYLSAVGAIMYLMVVTRPDLAAAVGVLSQFASDPCPTHWQALKRVLRYLQSTQTYG 60

Query: 61  LVYGSKDLI-LTGYTDSDFPSDKDARKSTSRSLFTLNGGVV 101
           L +       L GY+D+D+  D ++R+STS  LF LNGG V
Sbjct: 61  LEFTRAGTAKLVGYSDADWAGDVESRRSTSGYLFKLNGGCV 101

[Close]

BLAST of Cmc08g0224021 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 69.3 bits (168), Expect = 2.8e-11
Identity = 38/97 (39.18%), Postives = 55/97 (56.70%), Query Frame = 0


Query: 3    NIPYASAVGSQMYAMLCTRHDICYSVGIVSRYQSNPGRDHWTAVKNILKYFRRTKDYMLV 62
            N P  S +G  MY MLCTR D+  +V I+SRY S    + W  +K +L+Y + T D  L+
Sbjct: 1178 NTPCRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLI 1237

Query: 63   YGSKDLI----LTGYTDSDFPSDKDARKSTSRSLFTL 96
            +  K+L     + GY DSD+   +  RKST+  LF +
Sbjct: 1238 F-KKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKM 1273

[Close]

BLAST of Cmc08g0224021 vs. ExPASy TrEMBL
Match: A0A5D3E2C0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2208G00020 PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 4.9e-51
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0


Query: 1   MSNIPYASAVGSQMYAMLCTRHDICYSVGIVSRYQSNPGRDHWTAVKNILKYFRRTKDYM 60
           MSNIPYASAVGSQMYAMLCTRHDICYSVGIVSRYQSNPGRDHWTAVKNILKYFRRTKDYM
Sbjct: 1   MSNIPYASAVGSQMYAMLCTRHDICYSVGIVSRYQSNPGRDHWTAVKNILKYFRRTKDYM 60

Query: 61  LVYGSKDLILTGYTDSDFPSDKDARKSTSRSLFTLNGGVVV 102
           LVYGSKDLILTGYTDSDFPSDKDARKSTSRSLFTLNGGVVV
Sbjct: 61  LVYGSKDLILTGYTDSDFPSDKDARKSTSRSLFTLNGGVVV 101

[Close]

BLAST of Cmc08g0224021 vs. ExPASy TrEMBL
Match: A0A5A7TK28 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold320G00480 PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 4.9e-51
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0


Query: 1   MSNIPYASAVGSQMYAMLCTRHDICYSVGIVSRYQSNPGRDHWTAVKNILKYFRRTKDYM 60
           MSNIPYASAVGSQMYAMLCTRHDICYSVGIVSRYQSNPGRDHWTAVKNILKYFRRTKDYM
Sbjct: 242 MSNIPYASAVGSQMYAMLCTRHDICYSVGIVSRYQSNPGRDHWTAVKNILKYFRRTKDYM 301

Query: 61  LVYGSKDLILTGYTDSDFPSDKDARKSTSRSLFTLNGGVVV 102
           LVYGSKDLILTGYTDSDFPSDKDARKSTSRSLFTLNGGVVV
Sbjct: 302 LVYGSKDLILTGYTDSDFPSDKDARKSTSRSLFTLNGGVVV 342

[Close]

BLAST of Cmc08g0224021 vs. ExPASy TrEMBL
Match: A0A5A7V6Q6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G004720 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 2.0e-44
Identity = 91/101 (90.10%), Postives = 93/101 (92.08%), Query Frame = 0


Query: 1   MSNIPYASAVGSQMYAMLCTRHDICYSVGIVSRYQSNPGRDHWTAVKNILKYFRRTKDYM 60
           MSNIPYASAVGS MYAMLCTR DICYSVGIV RYQSNPGRDHWT VKNILKY RRTKDYM
Sbjct: 19  MSNIPYASAVGSLMYAMLCTRPDICYSVGIVIRYQSNPGRDHWTTVKNILKYLRRTKDYM 78

Query: 61  LVYGSKDLILTGYTDSDFPSDKDARKSTSRSLFTLNGGVVV 102
           LVYGSKDLIL GYTDSDF +DKDARKSTSRS+FTLNGG VV
Sbjct: 79  LVYGSKDLILIGYTDSDFQTDKDARKSTSRSVFTLNGGAVV 119

[Close]

BLAST of Cmc08g0224021 vs. ExPASy TrEMBL
Match: A0A5D3CI71 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold73G00330 PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 4.4e-44
Identity = 90/101 (89.11%), Postives = 94/101 (93.07%), Query Frame = 0


Query: 1   MSNIPYASAVGSQMYAMLCTRHDICYSVGIVSRYQSNPGRDHWTAVKNILKYFRRTKDYM 60
           MSNIPYASA+GS MYAMLCTR DICYSVGIV+RYQSNPGRDHWTAVKNILKY RRTKDYM
Sbjct: 168 MSNIPYASAIGSLMYAMLCTRVDICYSVGIVNRYQSNPGRDHWTAVKNILKYLRRTKDYM 227

Query: 61  LVYGSKDLILTGYTDSDFPSDKDARKSTSRSLFTLNGGVVV 102
           LVYGSKDLILTGYTDSDF +DKDARKSTS S+FTLN G VV
Sbjct: 228 LVYGSKDLILTGYTDSDFQTDKDARKSTSGSIFTLNEGAVV 268

[Close]

BLAST of Cmc08g0224021 vs. ExPASy TrEMBL
Match: A0A5D3CZA8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G001430 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 5.8e-44
Identity = 90/101 (89.11%), Postives = 94/101 (93.07%), Query Frame = 0


Query: 1   MSNIPYASAVGSQMYAMLCTRHDICYSVGIVSRYQSNPGRDHWTAVKNILKYFRRTKDYM 60
           MSNIPYASA+GS MYAMLCTR DICYSVGIVS Y SNPGRDHWT+VKNILKY RRTKDYM
Sbjct: 38  MSNIPYASAIGSLMYAMLCTRPDICYSVGIVSTYLSNPGRDHWTSVKNILKYLRRTKDYM 97

Query: 61  LVYGSKDLILTGYTDSDFPSDKDARKSTSRSLFTLNGGVVV 102
           LVYGSKDLILTGYTDSDF +DKDARKSTS S+FTLNGGVVV
Sbjct: 98  LVYGSKDLILTGYTDSDFQTDKDARKSTSGSVFTLNGGVVV 138

The following BLAST results are available for this feature:

BLAST of Cmc08g0224021 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK29751.1	1.0e-50	100.00	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0043610.1	1.0e-50	100.00	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0062116.1	4.1e-44	90.10	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK11050.1	9.1e-44	89.11	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0032045.1	1.2e-43	89.11	gag/pol protein [Cucumis melo var. makuwa] >TYK16865.1 gag/pol protein [Cucumis ...	[more]

BLAST of Cmc08g0224021 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	5.2e-26	55.00	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P0CV72	2.4e-18	44.55	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]
P04146	2.8e-11	39.18	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]

BLAST of Cmc08g0224021 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E2C0	4.9e-51	100.00	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2208G000...	[more]
A0A5A7TK28	4.9e-51	100.00	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold320G0048...	[more]
A0A5A7V6Q6	2.0e-44	90.10	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G00472...	[more]
A0A5D3CI71	4.4e-44	89.11	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold73G00330...	[more]
A0A5D3CZA8	5.8e-44	89.11	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G00143...	[more]

BLAST of Cmc08g0224021 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439:SF308	SUBFAMILY NOT NAMED	coord: 12..89
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 12..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0224021.1	Cmc08g0224021.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0008270	zinc ion binding