Cmc08g0223931 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0223931
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr08: 13544989 .. 13545600 (-)
RNA-Seq Expression	Cmc08g0223931
Synteny	Cmc08g0223931

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCACCAAAATTGGAAGAAAGCTATGGCAGAGGAAATAGAAGCCATGGAAAGAACTAATACATGGACTATTGTCTCCCTTCCAAAGAATTATCATACCGTAGGCAGTAAATGGGTCTACAAAGTTAAGTATAAACAACATGGAACAGTTGACAGATATAAAGCGAGACTTATAGCAAAAGGCTACAATCAACAAGAAGGAATAGACTTCTCAGATACCTTCTCACTTGTCGCGAAAATTGTCACTGTTAAAATCTTCTTAGCCCTTGTTGCATCCTACAATTGGTCTTTCACTCAAATGGACATCAATAATGCCTTCCTAAATGGTGATTTATTCGAGGAAGTGCGTATGTCTTTACCATTGGGCTATCAAACCTCACAAGTACCACGGAACGGTGAGAAACTAGCTTACAAACTTAACAAATCAATATACGGGCCCAAACAAGCCTCAAGACAATGGTTTCTCAAGTTTGCAGCAGCTTTATCCTTACATGGCTTCCATCAATCCAAGTCTGATTACTCTCTCTTTACCCAAGGACATGGACATGATTTTGTAGCATTGTTAGTATATGTCGATGACATATTACTAACCGGACCATCCCCCAAATAA

mRNA sequence

ATGAATCACCAAAATTGGAAGAAAGCTATGGCAGAGGAAATAGAAGCCATGGAAAGAACTAATACATGGACTATTGTCTCCCTTCCAAAGAATTATCATACCGTAGGCAGTAAATGGGTCTACAAAGTTAAGTATAAACAACATGGAACAGTTGACAGATATAAAGCGAGACTTATAGCAAAAGGCTACAATCAACAAGAAGGAATAGACTTCTCAGATACCTTCTCACTTGTCGCGAAAATTGTCACTGTTAAAATCTTCTTAGCCCTTGTTGCATCCTACAATTGGTCTTTCACTCAAATGGACATCAATAATGCCTTCCTAAATGGTGATTTATTCGAGGAAGTGCGTATGTCTTTACCATTGGGCTATCAAACCTCACAAGTACCACGGAACGGTGAGAAACTAGCTTACAAACTTAACAAATCAATATACGGGCCCAAACAAGCCTCAAGACAATGGTTTCTCAAGTTTGCAGCAGCTTTATCCTTACATGGCTTCCATCAATCCAAGTCTGATTACTCTCTCTTTACCCAAGGACATGGACATGATTTTGTAGCATTGTTAGTATATGTCGATGACATATTACTAACCGGACCATCCCCCAAATAA

Coding sequence (CDS)

ATGAATCACCAAAATTGGAAGAAAGCTATGGCAGAGGAAATAGAAGCCATGGAAAGAACTAATACATGGACTATTGTCTCCCTTCCAAAGAATTATCATACCGTAGGCAGTAAATGGGTCTACAAAGTTAAGTATAAACAACATGGAACAGTTGACAGATATAAAGCGAGACTTATAGCAAAAGGCTACAATCAACAAGAAGGAATAGACTTCTCAGATACCTTCTCACTTGTCGCGAAAATTGTCACTGTTAAAATCTTCTTAGCCCTTGTTGCATCCTACAATTGGTCTTTCACTCAAATGGACATCAATAATGCCTTCCTAAATGGTGATTTATTCGAGGAAGTGCGTATGTCTTTACCATTGGGCTATCAAACCTCACAAGTACCACGGAACGGTGAGAAACTAGCTTACAAACTTAACAAATCAATATACGGGCCCAAACAAGCCTCAAGACAATGGTTTCTCAAGTTTGCAGCAGCTTTATCCTTACATGGCTTCCATCAATCCAAGTCTGATTACTCTCTCTTTACCCAAGGACATGGACATGATTTTGTAGCATTGTTAGTATATGTCGATGACATATTACTAACCGGACCATCCCCCAAATAA

Protein sequence

MNHQNWKKAMAEEIEAMERTNTWTIVSLPKNYHTVGSKWVYKVKYKQHGTVDRYKARLIAKGYNQQEGIDFSDTFSLVAKIVTVKIFLALVASYNWSFTQMDINNAFLNGDLFEEVRMSLPLGYQTSQVPRNGEKLAYKLNKSIYGPKQASRQWFLKFAAALSLHGFHQSKSDYSLFTQGHGHDFVALLVYVDDILLTGPSPK

Homology

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BLAST of Cmc08g0223931 vs. NCBI nr
Match: KAA0043630.1 (Reverse transcriptase, RNA-dependent DNA polymerase [Cucumis melo var. makuwa] >TYK09733.1 Reverse transcriptase, RNA-dependent DNA polymerase [Cucumis melo var. makuwa])

HSP 1 Score: 416.4 bits (1069), Expect = 1.4e-112
Identity = 203/203 (100.00%), Postives = 203/203 (100.00%), Query Frame = 0


Query: 1   MNHQNWKKAMAEEIEAMERTNTWTIVSLPKNYHTVGSKWVYKVKYKQHGTVDRYKARLIA 60
           MNHQNWKKAMAEEIEAMERTNTWTIVSLPKNYHTVGSKWVYKVKYKQHGTVDRYKARLIA
Sbjct: 288 MNHQNWKKAMAEEIEAMERTNTWTIVSLPKNYHTVGSKWVYKVKYKQHGTVDRYKARLIA 347

Query: 61  KGYNQQEGIDFSDTFSLVAKIVTVKIFLALVASYNWSFTQMDINNAFLNGDLFEEVRMSL 120
           KGYNQQEGIDFSDTFSLVAKIVTVKIFLALVASYNWSFTQMDINNAFLNGDLFEEVRMSL
Sbjct: 348 KGYNQQEGIDFSDTFSLVAKIVTVKIFLALVASYNWSFTQMDINNAFLNGDLFEEVRMSL 407

Query: 121 PLGYQTSQVPRNGEKLAYKLNKSIYGPKQASRQWFLKFAAALSLHGFHQSKSDYSLFTQG 180
           PLGYQTSQVPRNGEKLAYKLNKSIYGPKQASRQWFLKFAAALSLHGFHQSKSDYSLFTQG
Sbjct: 408 PLGYQTSQVPRNGEKLAYKLNKSIYGPKQASRQWFLKFAAALSLHGFHQSKSDYSLFTQG 467

Query: 181 HGHDFVALLVYVDDILLTGPSPK 204
           HGHDFVALLVYVDDILLTGPSPK
Sbjct: 468 HGHDFVALLVYVDDILLTGPSPK 490

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BLAST of Cmc08g0223931 vs. NCBI nr
Match: XP_038879273.1 (uncharacterized mitochondrial protein AtMg00810-like [Benincasa hispida])

HSP 1 Score: 349.7 bits (896), Expect = 1.6e-92
Identity = 171/194 (88.14%), Postives = 178/194 (91.75%), Query Frame = 0


Query: 10  MAEEIEAMERTNTWTIVSLPKNYHTVGSKWVYKVKYKQHGTVDRYKARLIAKGYNQQEGI 69
           MAEEIEAMERTNTWTIVSLPKN+HT+GSKWVYKVKYKQ GTVD+YKARL+AK YNQQE I
Sbjct: 1   MAEEIEAMERTNTWTIVSLPKNHHTIGSKWVYKVKYKQDGTVDKYKARLVAKSYNQQEEI 60

Query: 70  DFSDTFSLVAKIVTVKIFLALVASYNWSFTQMDINNAFLNGDLFEEVRMSLPLGYQTSQV 129
           DFSDTFS +AKIVTVK+F AL  SYNWS TQMDINNAFLNGDLFEEV MSLPLGYQTSQV
Sbjct: 61  DFSDTFSPIAKIVTVKVFFALATSYNWSLTQMDINNAFLNGDLFEEVHMSLPLGYQTSQV 120

Query: 130 PRNGEKLAYKLNKSIYGPKQASRQWFLKFAAALSLHGFHQSKSDYSLFTQGHGHDFVALL 189
           P  GEKLA KLNKSIYG KQASRQW LKF AALS HGFHQSKSDYSLFTQGHGHDFVALL
Sbjct: 121 PWKGEKLACKLNKSIYGLKQASRQWSLKFTAALSSHGFHQSKSDYSLFTQGHGHDFVALL 180

Query: 190 VYVDDILLTGPSPK 204
           VYVDDILLTGPSP+
Sbjct: 181 VYVDDILLTGPSPQ 194

[Close]

BLAST of Cmc08g0223931 vs. NCBI nr
Match: KAA0038341.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYJ97054.1 Reverse transcriptase, RNA-dependent DNA polymerase [Cucumis melo var. makuwa])

HSP 1 Score: 323.2 bits (827), Expect = 1.6e-84
Identity = 162/202 (80.20%), Postives = 178/202 (88.12%), Query Frame = 0


Query: 1   MNHQNWKKAMAEEIEAMERTNTWTIVSLPKNYHTVGSKWVYKVKYKQHGTVDRYKARLIA 60
           + HQ W+KAMA EIEA +R NTWTIVSLPK++HTVGSKWVYKVK K  GT+DRYKARL+A
Sbjct: 177 VKHQTWRKAMALEIEATKRINTWTIVSLPKDHHTVGSKWVYKVKCKPDGTIDRYKARLVA 236

Query: 61  KGYNQQEGIDFSDTFSLVAKIVTVKIFLALVASYNWSFTQMDINNAFLNGDLFEEVRMSL 120
           KGYNQQEGIDFSDTFS VAKI TVKIFLAL A+YNWS +QMDINNAFLNGDLFEEV ++L
Sbjct: 237 KGYNQQEGIDFSDTFSPVAKISTVKIFLALTAAYNWSISQMDINNAFLNGDLFEEVHITL 296

Query: 121 PLGYQTSQVPRNGEKLAYKLNKSIYGPKQASRQWFLKFAAALSLHGFHQSKSDYSLFTQG 180
           PL  QTSQVP+ GEKLA KLNKSIY  KQASRQWFLKFAAA+S HGF QSK DYSLFT+G
Sbjct: 297 PL--QTSQVPKKGEKLACKLNKSIYDLKQASRQWFLKFAAAISSHGFIQSKVDYSLFTRG 356

Query: 181 HGHDFVALLVYVDDILLTGPSP 203
           +G  FVALLVYVDD+LLTGPSP
Sbjct: 357 NGSTFVALLVYVDDLLLTGPSP 376

[Close]

BLAST of Cmc08g0223931 vs. NCBI nr
Match: KAA0037194.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK13878.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 278.1 bits (710), Expect = 6.1e-71
Identity = 140/160 (87.50%), Postives = 145/160 (90.62%), Query Frame = 0


Query: 42  KVKYKQHGTVDRYKARLIAKGYNQQEGIDFSDTFSLVAKIVTVKIFLALVASYNWSFTQM 101
           K KYKQ GTVDRYKARL+AKGYNQQ+GIDFSDTFS V KIVTVKIFLALVAS NWS TQM
Sbjct: 361 KFKYKQDGTVDRYKARLVAKGYNQQKGIDFSDTFSPVVKIVTVKIFLALVASNNWSLTQM 420

Query: 102 DINNAFLNGDLFEEVRMSLPLGYQTSQVPRNGEKLAYKLNKSIYGPKQASRQWFLKFAAA 161
           DINNAFLNGDLFEEV MSLPL YQTSQVP+ G+KLA KLNKSIYG KQASRQWFLKFA A
Sbjct: 421 DINNAFLNGDLFEEVHMSLPLSYQTSQVPQKGKKLACKLNKSIYGFKQASRQWFLKFATA 480

Query: 162 LSLHGFHQSKSDYSLFTQGHGHDFVALLVYVDDILLTGPS 202
           LS HGFHQSKSDYSLFT+GHGHDFVALLVYVDDILLT  S
Sbjct: 481 LSSHGFHQSKSDYSLFTRGHGHDFVALLVYVDDILLTRSS 520

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BLAST of Cmc08g0223931 vs. NCBI nr
Match: KAA0068025.1 (Cysteine-rich RLK (receptor-like protein kinase) 8 [Cucumis melo var. makuwa])

HSP 1 Score: 236.9 bits (603), Expect = 1.5e-58
Identity = 114/196 (58.16%), Postives = 146/196 (74.49%), Query Frame = 0


Query: 4   QNWKKAMAEEIEAMERTNTWTIVSLPKNYHTVGSKWVYKVKYKQHGTVDRYKARLIAKGY 63
           Q W +AM  E+EAME   TW+IV LPK  +++G +WVYK+K+K  G+++RYK RL+AKGY
Sbjct: 518 QEWCEAMKAELEAMETNQTWSIVPLPKGKNSIGCRWVYKIKHKADGSIERYKTRLVAKGY 577

Query: 64  NQQEGIDFSDTFSLVAKIVTVKIFLALVASYNWSFTQMDINNAFLNGDLFEEVRMSLPLG 123
            QQEG+D+ +TFSLV K+VTVK  L +  S  W   Q+D+NNAFL+G+LFEEV M LPLG
Sbjct: 578 TQQEGLDYFETFSLVVKMVTVKTLLTIAVSKEWPLLQLDVNNAFLHGELFEEVYMDLPLG 637

Query: 124 YQTSQVPRNGEKLAYKLNKSIYGPKQASRQWFLKFAAALSLHGFHQSKSDYSLFTQGHGH 183
           Y+  Q    GEKL  +L+KSIYG KQASRQWF KF+  L   GF QSK++YSLF +G   
Sbjct: 638 YK-PQYEIQGEKLVCRLHKSIYGLKQASRQWFTKFSTFLVSLGFQQSKANYSLFIRGKND 697

Query: 184 DFVALLVYVDDILLTG 200
            F+ALLVYVDDI++TG
Sbjct: 698 SFIALLVYVDDIIITG 712

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BLAST of Cmc08g0223931 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 1.2e-40
Identity = 85/203 (41.87%), Postives = 124/203 (61.08%), Query Frame = 0


Query: 1    MNHQNWKKAMAEEIEAMERTNTWTIVSLPKNYHT-VGSKWVYKVKYKQHGTVDRYKARLI 60
            +  + W+ AM  EI A    +TW +V  P ++ T VG +W++  KY   G+++RYKARL+
Sbjct: 963  LKDERWRNAMGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARLV 1022

Query: 61   AKGYNQQEGIDFSDTFSLVAKIVTVKIFLALVASYNWSFTQMDINNAFLNGDLFEEVRMS 120
            AKGYNQ+ G+D+++TFS V K  +++I L +    +W   Q+D+NNAFL G L ++V MS
Sbjct: 1023 AKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMS 1082

Query: 121  LPLGYQTSQVPRNGEKLAYKLNKSIYGPKQASRQWFLKFAAALSLHGFHQSKSDYSLFTQ 180
             P G+    + ++      KL K++YG KQA R W+++    L   GF  S SD SLF  
Sbjct: 1083 QPPGF----IDKDRPNYVCKLRKALYGLKQAPRAWYVELRNYLLTIGFVNSVSDTSLFVL 1142

Query: 181  GHGHDFVALLVYVDDILLTGPSP 203
              G   V +LVYVDDIL+TG  P
Sbjct: 1143 QRGKSIVYMLVYVDDILITGNDP 1161

[Close]

BLAST of Cmc08g0223931 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 2.9e-39
Identity = 85/200 (42.50%), Postives = 121/200 (60.50%), Query Frame = 0


Query: 1    MNHQNWKKAMAEEIEAMERTNTWTIVSLPKNYHT-VGSKWVYKVKYKQHGTVDRYKARLI 60
            M    W++AM  EI A    +TW +V  P    T VG +W++  K+   G+++RYKARL+
Sbjct: 946  MKDDRWRQAMGSEINAQIGNHTWDLVPPPPPSVTIVGCRWIFTKKFNSDGSLNRYKARLV 1005

Query: 61   AKGYNQQEGIDFSDTFSLVAKIVTVKIFLALVASYNWSFTQMDINNAFLNGDLFEEVRMS 120
            AKGYNQ+ G+D+++TFS V K  +++I L +    +W   Q+D+NNAFL G L +EV MS
Sbjct: 1006 AKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDEVYMS 1065

Query: 121  LPLGYQTSQVPRNGEKLAYKLNKSIYGPKQASRQWFLKFAAALSLHGFHQSKSDYSLFTQ 180
             P G+    V ++      +L K+IYG KQA R W+++    L   GF  S SD SLF  
Sbjct: 1066 QPPGF----VDKDRPDYVCRLRKAIYGLKQAPRAWYVELRTYLLTVGFVNSISDTSLFVL 1125

Query: 181  GHGHDFVALLVYVDDILLTG 200
              G   + +LVYVDDIL+TG
Sbjct: 1126 QRGRSIIYMLVYVDDILITG 1141

[Close]

BLAST of Cmc08g0223931 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.9e-35
Identity = 79/194 (40.72%), Postives = 126/194 (64.95%), Query Frame = 0


Query: 8    KAMAEEIEAMERTNTWTIVSLPKNYHTVGSKWVYKVKYKQHGTVDRYKARLIAKGYNQQE 67
            KAM EE+E++++  T+ +V LPK    +  KWV+K+K      + RYKARL+ KG+ Q++
Sbjct: 828  KAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGFEQKK 887

Query: 68   GIDFSDTFSLVAKIVTVKIFLALVASYNWSFTQMDINNAFLNGDLFEEVRMSLPLGYQTS 127
            GIDF + FS V K+ +++  L+L AS +    Q+D+  AFL+GDL EE+ M  P G++ +
Sbjct: 888  GIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVA 947

Query: 128  QVPRNGEK-LAYKLNKSIYGPKQASRQWFLKFAAALSLHGFHQSKSDYSL-FTQGHGHDF 187
                 G+K +  KLNKS+YG KQA RQW++KF + +    + ++ SD  + F +   ++F
Sbjct: 948  -----GKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNF 1007

Query: 188  VALLVYVDDILLTG 200
            + LL+YVDD+L+ G
Sbjct: 1008 IILLLYVDDMLIVG 1016

[Close]

BLAST of Cmc08g0223931 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 148.3 bits (373), Expect = 9.5e-35
Identity = 81/195 (41.54%), Postives = 122/195 (62.56%), Query Frame = 0


Query: 5    NWKKAMAEEIEAMERTNTWTIVSLPKNYHTVGSKWVYKVKYKQHGTVDRYKARLIAKGYN 64
            +W++A+  E+ A +  NTWTI   P+N + V S+WV+ VKY + G   RYKARL+A+G+ 
Sbjct: 905  SWEEAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFT 964

Query: 65   QQEGIDFSDTFSLVAKIVTVKIFLALVASYNWSFTQMDINNAFLNGDLFEEVRMSLPLGY 124
            Q+  ID+ +TF+ VA+I + +  L+LV  YN    QMD+  AFLNG L EE+ M LP G 
Sbjct: 965  QKYQIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQG- 1024

Query: 125  QTSQVPRNGEKLAYKLNKSIYGPKQASRQWFLKFAAALSLHGFHQSKSDYSLF--TQGHG 184
                +  N + +  KLNK+IYG KQA+R WF  F  AL    F  S  D  ++   +G+ 
Sbjct: 1025 ----ISCNSDNVC-KLNKAIYGLKQAARCWFEVFEQALKECEFVNSSVDRCIYILDKGNI 1084

Query: 185  HDFVALLVYVDDILL 198
            ++ + +L+YVDD+++
Sbjct: 1085 NENIYVLLYVDDVVI 1093

[Close]

BLAST of Cmc08g0223931 vs. ExPASy Swiss-Prot
Match: P92520 (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 5.2e-17
Identity = 43/99 (43.43%), Postives = 62/99 (62.63%), Query Frame = 0


Query: 6   WKKAMAEEIEAMERTNTWTIVSLPKNYHTVGSKWVYKVKYKQHGTVDRYKARLIAKGYNQ 65
           W +AM EE++A+ R  TW +V  P N + +G KWV+K K    GT+DR KARL+AKG++Q
Sbjct: 40  WCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQ 99

Query: 66  QEGIDFSDTFSLVAKIVTVKIFLALV------ASYNWSF 99
           +EGI F +T+S V +  T++  L +        S NW F
Sbjct: 100 EEGIYFVETYSPVVRTATIRTILNVAQQLEVGQSINWMF 138

[Close]

BLAST of Cmc08g0223931 vs. ExPASy TrEMBL
Match: A0A5A7TK43 (Reverse transcriptase, RNA-dependent DNA polymerase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold447G001520 PE=4 SV=1)

HSP 1 Score: 416.4 bits (1069), Expect = 6.9e-113
Identity = 203/203 (100.00%), Postives = 203/203 (100.00%), Query Frame = 0


Query: 1   MNHQNWKKAMAEEIEAMERTNTWTIVSLPKNYHTVGSKWVYKVKYKQHGTVDRYKARLIA 60
           MNHQNWKKAMAEEIEAMERTNTWTIVSLPKNYHTVGSKWVYKVKYKQHGTVDRYKARLIA
Sbjct: 288 MNHQNWKKAMAEEIEAMERTNTWTIVSLPKNYHTVGSKWVYKVKYKQHGTVDRYKARLIA 347

Query: 61  KGYNQQEGIDFSDTFSLVAKIVTVKIFLALVASYNWSFTQMDINNAFLNGDLFEEVRMSL 120
           KGYNQQEGIDFSDTFSLVAKIVTVKIFLALVASYNWSFTQMDINNAFLNGDLFEEVRMSL
Sbjct: 348 KGYNQQEGIDFSDTFSLVAKIVTVKIFLALVASYNWSFTQMDINNAFLNGDLFEEVRMSL 407

Query: 121 PLGYQTSQVPRNGEKLAYKLNKSIYGPKQASRQWFLKFAAALSLHGFHQSKSDYSLFTQG 180
           PLGYQTSQVPRNGEKLAYKLNKSIYGPKQASRQWFLKFAAALSLHGFHQSKSDYSLFTQG
Sbjct: 408 PLGYQTSQVPRNGEKLAYKLNKSIYGPKQASRQWFLKFAAALSLHGFHQSKSDYSLFTQG 467

Query: 181 HGHDFVALLVYVDDILLTGPSPK 204
           HGHDFVALLVYVDDILLTGPSPK
Sbjct: 468 HGHDFVALLVYVDDILLTGPSPK 490

[Close]

BLAST of Cmc08g0223931 vs. ExPASy TrEMBL
Match: A0A5D3BDH6 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold506G001210 PE=4 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 8.0e-85
Identity = 162/202 (80.20%), Postives = 178/202 (88.12%), Query Frame = 0


Query: 1   MNHQNWKKAMAEEIEAMERTNTWTIVSLPKNYHTVGSKWVYKVKYKQHGTVDRYKARLIA 60
           + HQ W+KAMA EIEA +R NTWTIVSLPK++HTVGSKWVYKVK K  GT+DRYKARL+A
Sbjct: 177 VKHQTWRKAMALEIEATKRINTWTIVSLPKDHHTVGSKWVYKVKCKPDGTIDRYKARLVA 236

Query: 61  KGYNQQEGIDFSDTFSLVAKIVTVKIFLALVASYNWSFTQMDINNAFLNGDLFEEVRMSL 120
           KGYNQQEGIDFSDTFS VAKI TVKIFLAL A+YNWS +QMDINNAFLNGDLFEEV ++L
Sbjct: 237 KGYNQQEGIDFSDTFSPVAKISTVKIFLALTAAYNWSISQMDINNAFLNGDLFEEVHITL 296

Query: 121 PLGYQTSQVPRNGEKLAYKLNKSIYGPKQASRQWFLKFAAALSLHGFHQSKSDYSLFTQG 180
           PL  QTSQVP+ GEKLA KLNKSIY  KQASRQWFLKFAAA+S HGF QSK DYSLFT+G
Sbjct: 297 PL--QTSQVPKKGEKLACKLNKSIYDLKQASRQWFLKFAAAISSHGFIQSKVDYSLFTRG 356

Query: 181 HGHDFVALLVYVDDILLTGPSP 203
           +G  FVALLVYVDD+LLTGPSP
Sbjct: 357 NGSTFVALLVYVDDLLLTGPSP 376

[Close]

BLAST of Cmc08g0223931 vs. ExPASy TrEMBL
Match: A0A5A7T140 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold832G00650 PE=4 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 2.9e-71
Identity = 140/160 (87.50%), Postives = 145/160 (90.62%), Query Frame = 0


Query: 42  KVKYKQHGTVDRYKARLIAKGYNQQEGIDFSDTFSLVAKIVTVKIFLALVASYNWSFTQM 101
           K KYKQ GTVDRYKARL+AKGYNQQ+GIDFSDTFS V KIVTVKIFLALVAS NWS TQM
Sbjct: 361 KFKYKQDGTVDRYKARLVAKGYNQQKGIDFSDTFSPVVKIVTVKIFLALVASNNWSLTQM 420

Query: 102 DINNAFLNGDLFEEVRMSLPLGYQTSQVPRNGEKLAYKLNKSIYGPKQASRQWFLKFAAA 161
           DINNAFLNGDLFEEV MSLPL YQTSQVP+ G+KLA KLNKSIYG KQASRQWFLKFA A
Sbjct: 421 DINNAFLNGDLFEEVHMSLPLSYQTSQVPQKGKKLACKLNKSIYGFKQASRQWFLKFATA 480

Query: 162 LSLHGFHQSKSDYSLFTQGHGHDFVALLVYVDDILLTGPS 202
           LS HGFHQSKSDYSLFT+GHGHDFVALLVYVDDILLT  S
Sbjct: 481 LSSHGFHQSKSDYSLFTRGHGHDFVALLVYVDDILLTRSS 520

[Close]

BLAST of Cmc08g0223931 vs. ExPASy TrEMBL
Match: A0A2N9IIU5 (Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS52250 PE=4 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 8.0e-61
Identity = 120/199 (60.30%), Postives = 150/199 (75.38%), Query Frame = 0


Query: 5   NWKKAMAEEIEAMERTNTWTIVSLPKNYHTVGSKWVYKVKYKQHGTVDRYKARLIAKGYN 64
           +W  AM++E+EA+   NTW + SLP   H +G KWVYK+K+K  GT++RYKARL+AKGYN
Sbjct: 662 HWVDAMSKELEALAANNTWVLTSLPPGKHPIGCKWVYKLKFKSDGTIERYKARLVAKGYN 721

Query: 65  QQEGIDFSDTFSLVAKIVTVKIFLALVASYNWSFTQMDINNAFLNGDLFEEVRMSLPLGY 124
           Q+EGID+S+TFS VAK+VTV+ FLA  A+  WS TQ+D+NNAFL+GDL EEV MSLPLGY
Sbjct: 722 QREGIDYSETFSPVAKLVTVRSFLANAAAKGWSITQLDVNNAFLHGDLDEEVYMSLPLGY 781

Query: 125 Q-TSQVPRNGEKLAYKLNKSIYGPKQASRQWFLKFAAALSLHGFHQSKSDYSLFTQGHGH 184
           +  +Q+P        KL KS+YG KQASRQWF KF++ L  HGF QSK DYSLFT+  G 
Sbjct: 782 KGNNQLPHQ----VCKLTKSLYGLKQASRQWFSKFSSTLLHHGFIQSKCDYSLFTKTKGS 841

Query: 185 DFVALLVYVDDILLTGPSP 203
            F+ALLVYVDDIL+    P
Sbjct: 842 TFIALLVYVDDILIASNDP 856

[Close]

BLAST of Cmc08g0223931 vs. ExPASy TrEMBL
Match: A0A2N9J5M0 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS60628 PE=4 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 4.4e-59
Identity = 115/198 (58.08%), Postives = 151/198 (76.26%), Query Frame = 0


Query: 6   WKKAMAEEIEAMERTNTWTIVSLPKNYHTVGSKWVYKVKYKQHGTVDRYKARLIAKGYNQ 65
           W +AM++E+ A+E  +TW + SLP   H +G KWVYK+K+K  G+++RYKARL+AKGYNQ
Sbjct: 654 WCEAMSKELTALEANHTWVLTSLPPGKHPIGCKWVYKLKFKSDGSIERYKARLVAKGYNQ 713

Query: 66  QEGIDFSDTFSLVAKIVTVKIFLALVASYNWSFTQMDINNAFLNGDLFEEVRMSLPLGYQ 125
           QEG+D+ +TFS VAK+VTV+ F+A+ A+  WS TQ+D+NNAFL+G+L EEV MSLPLGY+
Sbjct: 714 QEGLDYFETFSPVAKLVTVRSFVAIAAAKGWSLTQLDVNNAFLHGELDEEVYMSLPLGYK 773

Query: 126 -TSQVPRNGEKLAYKLNKSIYGPKQASRQWFLKFAAALSLHGFHQSKSDYSLFTQGHGHD 185
             S++P        KL KS+YG KQASRQWF KF++ L  HGF QSK DYSLFT+  G  
Sbjct: 774 GDSKLPHQ----VCKLTKSLYGLKQASRQWFSKFSSTLLHHGFTQSKCDYSLFTKTAGST 833

Query: 186 FVALLVYVDDILLTGPSP 203
           F+ALLVYVDDIL+   +P
Sbjct: 834 FIALLVYVDDILIASNAP 847

[Close]

BLAST of Cmc08g0223931 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 206.8 bits (525), Expect = 1.6e-53
Identity = 106/192 (55.21%), Postives = 132/192 (68.75%), Query Frame = 0


Query: 6   WKKAMAEEIEAMERTNTWTIVSLPKNYHTVGSKWVYKVKYKQHGTVDRYKARLIAKGYNQ 65
           W  AM +EI AME T+TW I +LP N   +G KWVYK+KY   GT++RYKARL+AKGY Q
Sbjct: 98  WCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGYTQ 157

Query: 66  QEGIDFSDTFSLVAKIVTVKIFLALVASYNWSFTQMDINNAFLNGDLFEEVRMSLPLGYQ 125
           QEGIDF +TFS V K+ +VK+ LA+ A YN++  Q+DI+NAFLNGDL EE+ M LP GY 
Sbjct: 158 QEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYA 217

Query: 126 TSQVPRNGEKLAYKLNKSIYGPKQASRQWFLKFAAALSLHGFHQSKSDYSLFTQGHGHDF 185
             Q           L KSIYG KQASRQWFLKF+  L   GF QS SD++ F +     F
Sbjct: 218 ARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSDHTYFLKITATLF 277

Query: 186 VALLVYVDDILL 198
           + +LVYVDDI++
Sbjct: 278 LCVLVYVDDIII 289

[Close]

BLAST of Cmc08g0223931 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 89.4 bits (220), Expect = 3.7e-18
Identity = 43/99 (43.43%), Postives = 62/99 (62.63%), Query Frame = 0


Query: 6   WKKAMAEEIEAMERTNTWTIVSLPKNYHTVGSKWVYKVKYKQHGTVDRYKARLIAKGYNQ 65
           W +AM EE++A+ R  TW +V  P N + +G KWV+K K    GT+DR KARL+AKG++Q
Sbjct: 40  WCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQ 99

Query: 66  QEGIDFSDTFSLVAKIVTVKIFLALV------ASYNWSF 99
           +EGI F +T+S V +  T++  L +        S NW F
Sbjct: 100 EEGIYFVETYSPVVRTATIRTILNVAQQLEVGQSINWMF 138

The following BLAST results are available for this feature:

BLAST of Cmc08g0223931 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0043630.1	1.4e-112	100.00	Reverse transcriptase, RNA-dependent DNA polymerase [Cucumis melo var. makuwa] >...	[more]
XP_038879273.1	1.6e-92	88.14	uncharacterized mitochondrial protein AtMg00810-like [Benincasa hispida]	[more]
KAA0038341.1	1.6e-84	80.20	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0037194.1	6.1e-71	87.50	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0068025.1	1.5e-58	58.16	Cysteine-rich RLK (receptor-like protein kinase) 8 [Cucumis melo var. makuwa]	[more]

BLAST of Cmc08g0223931 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94HW2	1.2e-40	41.87	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	2.9e-39	42.50	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P10978	1.9e-35	40.72	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	9.5e-35	41.54	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P92520	5.2e-17	43.43	Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cmc08g0223931 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TK43	6.9e-113	100.00	Reverse transcriptase, RNA-dependent DNA polymerase OS=Cucumis melo var. makuwa ...	[more]
A0A5D3BDH6	8.0e-85	80.20	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7T140	2.9e-71	87.50	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A2N9IIU5	8.0e-61	60.30	Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB...	[more]
A0A2N9J5M0	4.4e-59	58.08	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS60628 PE=4 SV=1	[more]

BLAST of Cmc08g0223931 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	1.6e-53	55.21	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00820.1	3.7e-18	43.43	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 21..199 e-value: 4.3E-49 score: 167.3
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 48..199
None	No IPR available	PANTHER	PTHR11439:SF322	CLASSICAL ARABINOGALACTAN PROTEIN 9-LIKE	coord: 48..199
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 21..201

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0223931.1	Cmc08g0223931.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0016020	membrane
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity