Cmc08g0223881 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0223881
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Beta-galactosidase
Location	CMiso1.1chr08: 13522109 .. 13522495 (+)
RNA-Seq Expression	Cmc08g0223881
Synteny	Cmc08g0223881

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGTGGCCAGATCTAAAGAAGGCATCTCCGTGTCTCAGAGAAAATGCACCCTTGATCTGCTAACCGAGACAGGTATGTTGGGATGTCATCCCGCTGACACTCCTATTGAATTCAAACGTAAACTAGGAAACTCTGATGATCAAGTTCCAGTTGGTAAGGAACAATATCAGCGCCTTGTGGGTAAATTGATTTACTTATCTCATACTTGTCCTGATATTTCCTTTGTTGTTAGTGCTGTCAGCCAGTTTATGCAAGCTCCCTATGAGAAACACATGGAAGCTGTCAAAAGAATTCTGAGATACTTAAAAACGACACCTGGCAAAGGGTTGATGTTTAAAAAGACAGACAAAAAGACCATCGTGGCATATACTGACTCGGATTAG

mRNA sequence

ATGGAGGTGGCCAGATCTAAAGAAGGCATCTCCGTGTCTCAGAGAAAATGCACCCTTGATCTGCTAACCGAGACAGGTATGTTGGGATGTCATCCCGCTGACACTCCTATTGAATTCAAACGTAAACTAGGAAACTCTGATGATCAAGTTCCAGTTGGTAAGGAACAATATCAGCGCCTTGTGGGTAAATTGATTTACTTATCTCATACTTGTCCTGATATTTCCTTTGTTGTTAGTGCTGTCAGCCAGTTTATGCAAGCTCCCTATGAGAAACACATGGAAGCTGTCAAAAGAATTCTGAGATACTTAAAAACGACACCTGGCAAAGGGTTGATGTTTAAAAAGACAGACAAAAAGACCATCGTGGCATATACTGACTCGGATTAG

Coding sequence (CDS)

ATGGAGGTGGCCAGATCTAAAGAAGGCATCTCCGTGTCTCAGAGAAAATGCACCCTTGATCTGCTAACCGAGACAGGTATGTTGGGATGTCATCCCGCTGACACTCCTATTGAATTCAAACGTAAACTAGGAAACTCTGATGATCAAGTTCCAGTTGGTAAGGAACAATATCAGCGCCTTGTGGGTAAATTGATTTACTTATCTCATACTTGTCCTGATATTTCCTTTGTTGTTAGTGCTGTCAGCCAGTTTATGCAAGCTCCCTATGAGAAACACATGGAAGCTGTCAAAAGAATTCTGAGATACTTAAAAACGACACCTGGCAAAGGGTTGATGTTTAAAAAGACAGACAAAAAGACCATCGTGGCATATACTGACTCGGATTAG

Protein sequence

MEVARSKEGISVSQRKCTLDLLTETGMLGCHPADTPIEFKRKLGNSDDQVPVGKEQYQRLVGKLIYLSHTCPDISFVVSAVSQFMQAPYEKHMEAVKRILRYLKTTPGKGLMFKKTDKKTIVAYTDSD

Homology

[Close]

BLAST of Cmc08g0223881 vs. NCBI nr
Match: KAA0045027.1 (Beta-galactosidase [Cucumis melo var. makuwa] >TYJ96299.1 Beta-galactosidase [Cucumis melo var. makuwa])

HSP 1 Score: 231.1 bits (588), Expect = 5.4e-57
Identity = 118/128 (92.19%), Postives = 119/128 (92.97%), Query Frame = 0


Query: 1   MEVARSKEGISVSQRKCTLDLLTETGMLGCHPADTPIEFKRKLGNSDDQVPVGKEQYQRL 60
           MEVARSKEGISVSQRK TLDLLTETGMLGC  ADTPIEF  KLGNS+DQVPV KEQYQRL
Sbjct: 801 MEVARSKEGISVSQRKYTLDLLTETGMLGCRLADTPIEFNCKLGNSNDQVPVDKEQYQRL 860

Query: 61  VGKLIYLSHTCPDISFVVSAVSQFMQAPYEKHMEAVKRILRYLKTTPGKGLMFKKTDKKT 120
           VGKLIYLSHT PDISF VSAVSQFMQAPYEKHMEAVKRILRYLKTTPGKGLMFKKTDKKT
Sbjct: 861 VGKLIYLSHTRPDISFAVSAVSQFMQAPYEKHMEAVKRILRYLKTTPGKGLMFKKTDKKT 920

Query: 121 IVAYTDSD 129
           I AYTDSD
Sbjct: 921 IGAYTDSD 928

[Close]

BLAST of Cmc08g0223881 vs. NCBI nr
Match: TYK23097.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 229.6 bits (584), Expect = 1.6e-56
Identity = 117/128 (91.41%), Postives = 119/128 (92.97%), Query Frame = 0


Query: 1    MEVARSKEGISVSQRKCTLDLLTETGMLGCHPADTPIEFKRKLGNSDDQVPVGKEQYQRL 60
            MEVARSKEGISVSQRK TLDLLTETGMLGC  ADTPIEF  KLGNSDDQVPV KEQYQRL
Sbjct: 1479 MEVARSKEGISVSQRKYTLDLLTETGMLGCCLADTPIEFNCKLGNSDDQVPVDKEQYQRL 1538

Query: 61   VGKLIYLSHTCPDISFVVSAVSQFMQAPYEKHMEAVKRILRYLKTTPGKGLMFKKTDKKT 120
            VGKLIYLSHT PDISF VSAVSQFMQAPYE+HMEAVKRILRYLKTTPGKGLMF+KTDKKT
Sbjct: 1539 VGKLIYLSHTHPDISFAVSAVSQFMQAPYEEHMEAVKRILRYLKTTPGKGLMFRKTDKKT 1598

Query: 121  IVAYTDSD 129
            I AYTDSD
Sbjct: 1599 IEAYTDSD 1606

[Close]

BLAST of Cmc08g0223881 vs. NCBI nr
Match: KAA0025138.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 229.6 bits (584), Expect = 1.6e-56
Identity = 117/128 (91.41%), Postives = 119/128 (92.97%), Query Frame = 0


Query: 1    MEVARSKEGISVSQRKCTLDLLTETGMLGCHPADTPIEFKRKLGNSDDQVPVGKEQYQRL 60
            MEVARSKEGISVSQRK TLDLLTETGMLGC  ADTPIEF  KLGNSDDQVPV KEQYQRL
Sbjct: 1462 MEVARSKEGISVSQRKYTLDLLTETGMLGCCLADTPIEFNCKLGNSDDQVPVDKEQYQRL 1521

Query: 61   VGKLIYLSHTCPDISFVVSAVSQFMQAPYEKHMEAVKRILRYLKTTPGKGLMFKKTDKKT 120
            VGKLIYLSHT PDISF VSAVSQFMQAPYE+HMEAVKRILRYLKTTPGKGLMF+KTDKKT
Sbjct: 1522 VGKLIYLSHTHPDISFAVSAVSQFMQAPYEEHMEAVKRILRYLKTTPGKGLMFRKTDKKT 1581

Query: 121  IVAYTDSD 129
            I AYTDSD
Sbjct: 1582 IEAYTDSD 1589

[Close]

BLAST of Cmc08g0223881 vs. NCBI nr
Match: KAA0067540.1 (Beta-galactosidase [Cucumis melo var. makuwa])

HSP 1 Score: 228.8 bits (582), Expect = 2.7e-56
Identity = 114/128 (89.06%), Postives = 117/128 (91.41%), Query Frame = 0


Query: 1    MEVARSKEGISVSQRKCTLDLLTETGMLGCHPADTPIEFKRKLGNSDDQVPVGKEQYQRL 60
            MEVARSKEGISVSQRK TLDLLTETGMLGCHPADTPIEF  KLGNSDDQVPV KEQY RL
Sbjct: 1257 MEVARSKEGISVSQRKYTLDLLTETGMLGCHPADTPIEFNCKLGNSDDQVPVDKEQYHRL 1316

Query: 61   VGKLIYLSHTCPDISFVVSAVSQFMQAPYEKHMEAVKRILRYLKTTPGKGLMFKKTDKKT 120
            VGKLIYLSHT PDISF VS VSQFMQAPYEKHMEAV RILRYLK TPGKGLMF+KT++KT
Sbjct: 1317 VGKLIYLSHTRPDISFAVSVVSQFMQAPYEKHMEAVNRILRYLKNTPGKGLMFRKTNRKT 1376

Query: 121  IVAYTDSD 129
            I AYTDSD
Sbjct: 1377 IEAYTDSD 1384

[Close]

BLAST of Cmc08g0223881 vs. NCBI nr
Match: TYJ99952.1 (Beta-galactosidase [Cucumis melo var. makuwa] >TYK02395.1 Beta-galactosidase [Cucumis melo var. makuwa])

HSP 1 Score: 227.6 bits (579), Expect = 5.9e-56
Identity = 114/128 (89.06%), Postives = 117/128 (91.41%), Query Frame = 0


Query: 1    MEVARSKEGISVSQRKCTLDLLTETGMLGCHPADTPIEFKRKLGNSDDQVPVGKEQYQRL 60
            MEVARSKEGISVSQRK TLDLLTETGMLGC PADTPIEF  KLGNSDDQVPV KEQYQRL
Sbjct: 1327 MEVARSKEGISVSQRKYTLDLLTETGMLGCRPADTPIEFNCKLGNSDDQVPVDKEQYQRL 1386

Query: 61   VGKLIYLSHTCPDISFVVSAVSQFMQAPYEKHMEAVKRILRYLKTTPGKGLMFKKTDKKT 120
            VGKLIYLSHT PDISF VS VSQFMQAPYEKHMEAV RILRYLK TPGKGLMF+KT++KT
Sbjct: 1387 VGKLIYLSHTRPDISFAVSVVSQFMQAPYEKHMEAVNRILRYLKNTPGKGLMFRKTNRKT 1446

Query: 121  IVAYTDSD 129
            I AYTDSD
Sbjct: 1447 IEAYTDSD 1454

[Close]

BLAST of Cmc08g0223881 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 3.8e-21
Identity = 53/128 (41.41%), Postives = 76/128 (59.38%), Query Frame = 0


Query: 1    MEVARSKEGISVSQRKCTLDLLTETGMLGCHPADTPIEFKRKLGNSDDQVPVGKEQYQRL 60
            +E  R   G+ +SQR+  LDLL  T M+   P  TP+    KL            +Y+ +
Sbjct: 1189 IEAKRVPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPSPKLSLYSGTKLTDPTEYRGI 1248

Query: 61   VGKLIYLSHTCPDISFVVSAVSQFMQAPYEKHMEAVKRILRYLKTTPGKGLMFKKTDKKT 120
            VG L YL+ T PDIS+ V+ +SQFM  P E+H++A+KRILRYL  TP  G+  KK +  +
Sbjct: 1249 VGSLQYLAFTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLKKGNTLS 1308

Query: 121  IVAYTDSD 129
            + AY+D+D
Sbjct: 1309 LHAYSDAD 1316

[Close]

BLAST of Cmc08g0223881 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 2.4e-20
Identity = 53/129 (41.09%), Postives = 80/129 (62.02%), Query Frame = 0


Query: 1    MEVARSKEGISVSQRKCTLDLLTETGMLGCHPADTPIEFKRKLG-NSDDQVPVGKEQYQR 60
            +E  R  +G+ +SQR+ TLDLL  T ML   P  TP+    KL  +S  ++P    +Y+ 
Sbjct: 1172 IEAKRVPQGLHLSQRRYTLDLLARTNMLTAKPVATPMATSPKLTLHSGTKLP-DPTEYRG 1231

Query: 61   LVGKLIYLSHTCPDISFVVSAVSQFMQAPYEKHMEAVKRILRYLKTTPGKGLMFKKTDKK 120
            +VG L YL+ T PD+S+ V+ +SQ+M  P + H  A+KR+LRYL  TP  G+  KK +  
Sbjct: 1232 IVGSLQYLAFTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFLKKGNTL 1291

Query: 121  TIVAYTDSD 129
            ++ AY+D+D
Sbjct: 1292 SLHAYSDAD 1299

[Close]

BLAST of Cmc08g0223881 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 3.4e-14
Identity = 45/128 (35.16%), Postives = 65/128 (50.78%), Query Frame = 0


Query: 1   MEVARSKEGISVSQRKCTLDLLTETGMLGCHPADTPIEFKRKLGNSDDQVPVGKEQYQRL 60
           +++     G+ +SQ K    +L   GML C P  TP+  K     S  + P     ++ +
Sbjct: 45  IQIKTHPSGLFLSQTKYAEQILNNAGMLDCKPMSTPLPLKLNSSVSTAKYP-DPSDFRSI 104

Query: 61  VGKLIYLSHTCPDISFVVSAVSQFMQAPYEKHMEAVKRILRYLKTTPGKGLMFKKTDKKT 120
           VG L YL+ T PDIS+ V+ V Q M  P     + +KR+LRY+K T   GL   K  K  
Sbjct: 105 VGALQYLTLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLN 164

Query: 121 IVAYTDSD 129
           + A+ DSD
Sbjct: 165 VQAFCDSD 171

[Close]

BLAST of Cmc08g0223881 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.0e-10
Identity = 45/131 (34.35%), Postives = 66/131 (50.38%), Query Frame = 0


Query: 5    RSKEGISVSQRKCTLDLLTETGMLGCHPADTPIEFKRKLGNS------DDQVPVGKEQYQ 64
            R+   + +SQ K    +L    M    P  TP+    KL         +++  + K  Y 
Sbjct: 1053 RTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKVPYS 1112

Query: 65   RLVGKLIY-LSHTCPDISFVVSAVSQFMQAPYEKHMEAVKRILRYLKTTPGKGLMFKKTD 124
              VG L+Y +  T PDI+  V  VS+F++ P ++H EAVK ILRYL+ T G  L F  +D
Sbjct: 1113 SAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFGGSD 1172

Query: 125  KKTIVAYTDSD 129
               +  YTD+D
Sbjct: 1173 -PILKGYTDAD 1182

[Close]

BLAST of Cmc08g0223881 vs. ExPASy Swiss-Prot
Match: P25600 (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5A PE=5 SV=2)

HSP 1 Score: 57.0 bits (136), Expect = 1.8e-07
Identity = 27/72 (37.50%), Postives = 47/72 (65.28%), Query Frame = 0


Query: 57  YQRLVGKLIYLSHT-CPDISFVVSAVSQFMQAPYEKHMEAVKRILRYLKTTPGKGLMFKK 116
           YQ +VG+L++ ++T  PDIS+ VS +S+F++ P   H+E+ +R+LRYL TT    L ++ 
Sbjct: 183 YQSIVGQLLFCANTGRPDISYPVSLLSRFLREPRAIHLESARRVLRYLYTTRSMCLKYRS 242

Query: 117 TDKKTIVAYTDS 128
             +  +  Y D+
Sbjct: 243 GSQLALTVYCDA 254

[Close]

BLAST of Cmc08g0223881 vs. ExPASy TrEMBL
Match: A0A5D3BBC2 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold78209G00980 PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 2.6e-57
Identity = 118/128 (92.19%), Postives = 119/128 (92.97%), Query Frame = 0


Query: 1   MEVARSKEGISVSQRKCTLDLLTETGMLGCHPADTPIEFKRKLGNSDDQVPVGKEQYQRL 60
           MEVARSKEGISVSQRK TLDLLTETGMLGC  ADTPIEF  KLGNS+DQVPV KEQYQRL
Sbjct: 801 MEVARSKEGISVSQRKYTLDLLTETGMLGCRLADTPIEFNCKLGNSNDQVPVDKEQYQRL 860

Query: 61  VGKLIYLSHTCPDISFVVSAVSQFMQAPYEKHMEAVKRILRYLKTTPGKGLMFKKTDKKT 120
           VGKLIYLSHT PDISF VSAVSQFMQAPYEKHMEAVKRILRYLKTTPGKGLMFKKTDKKT
Sbjct: 861 VGKLIYLSHTRPDISFAVSAVSQFMQAPYEKHMEAVKRILRYLKTTPGKGLMFKKTDKKT 920

Query: 121 IVAYTDSD 129
           I AYTDSD
Sbjct: 921 IGAYTDSD 928

[Close]

BLAST of Cmc08g0223881 vs. ExPASy TrEMBL
Match: A0A5A7SG80 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold124G00380 PE=3 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 7.6e-57
Identity = 117/128 (91.41%), Postives = 119/128 (92.97%), Query Frame = 0


Query: 1    MEVARSKEGISVSQRKCTLDLLTETGMLGCHPADTPIEFKRKLGNSDDQVPVGKEQYQRL 60
            MEVARSKEGISVSQRK TLDLLTETGMLGC  ADTPIEF  KLGNSDDQVPV KEQYQRL
Sbjct: 1462 MEVARSKEGISVSQRKYTLDLLTETGMLGCCLADTPIEFNCKLGNSDDQVPVDKEQYQRL 1521

Query: 61   VGKLIYLSHTCPDISFVVSAVSQFMQAPYEKHMEAVKRILRYLKTTPGKGLMFKKTDKKT 120
            VGKLIYLSHT PDISF VSAVSQFMQAPYE+HMEAVKRILRYLKTTPGKGLMF+KTDKKT
Sbjct: 1522 VGKLIYLSHTHPDISFAVSAVSQFMQAPYEEHMEAVKRILRYLKTTPGKGLMFRKTDKKT 1581

Query: 121  IVAYTDSD 129
            I AYTDSD
Sbjct: 1582 IEAYTDSD 1589

[Close]

BLAST of Cmc08g0223881 vs. ExPASy TrEMBL
Match: A0A5D3DHC0 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G00790 PE=3 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 7.6e-57
Identity = 117/128 (91.41%), Postives = 119/128 (92.97%), Query Frame = 0


Query: 1    MEVARSKEGISVSQRKCTLDLLTETGMLGCHPADTPIEFKRKLGNSDDQVPVGKEQYQRL 60
            MEVARSKEGISVSQRK TLDLLTETGMLGC  ADTPIEF  KLGNSDDQVPV KEQYQRL
Sbjct: 1479 MEVARSKEGISVSQRKYTLDLLTETGMLGCCLADTPIEFNCKLGNSDDQVPVDKEQYQRL 1538

Query: 61   VGKLIYLSHTCPDISFVVSAVSQFMQAPYEKHMEAVKRILRYLKTTPGKGLMFKKTDKKT 120
            VGKLIYLSHT PDISF VSAVSQFMQAPYE+HMEAVKRILRYLKTTPGKGLMF+KTDKKT
Sbjct: 1539 VGKLIYLSHTHPDISFAVSAVSQFMQAPYEEHMEAVKRILRYLKTTPGKGLMFRKTDKKT 1598

Query: 121  IVAYTDSD 129
            I AYTDSD
Sbjct: 1599 IEAYTDSD 1606

[Close]

BLAST of Cmc08g0223881 vs. ExPASy TrEMBL
Match: A0A5A7VK49 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold50G00640 PE=4 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 1.3e-56
Identity = 114/128 (89.06%), Postives = 117/128 (91.41%), Query Frame = 0


Query: 1    MEVARSKEGISVSQRKCTLDLLTETGMLGCHPADTPIEFKRKLGNSDDQVPVGKEQYQRL 60
            MEVARSKEGISVSQRK TLDLLTETGMLGCHPADTPIEF  KLGNSDDQVPV KEQY RL
Sbjct: 1257 MEVARSKEGISVSQRKYTLDLLTETGMLGCHPADTPIEFNCKLGNSDDQVPVDKEQYHRL 1316

Query: 61   VGKLIYLSHTCPDISFVVSAVSQFMQAPYEKHMEAVKRILRYLKTTPGKGLMFKKTDKKT 120
            VGKLIYLSHT PDISF VS VSQFMQAPYEKHMEAV RILRYLK TPGKGLMF+KT++KT
Sbjct: 1317 VGKLIYLSHTRPDISFAVSVVSQFMQAPYEKHMEAVNRILRYLKNTPGKGLMFRKTNRKT 1376

Query: 121  IVAYTDSD 129
            I AYTDSD
Sbjct: 1377 IEAYTDSD 1384

[Close]

BLAST of Cmc08g0223881 vs. ExPASy TrEMBL
Match: A0A5D3BJK7 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G001020 PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 2.9e-56
Identity = 114/128 (89.06%), Postives = 117/128 (91.41%), Query Frame = 0


Query: 1    MEVARSKEGISVSQRKCTLDLLTETGMLGCHPADTPIEFKRKLGNSDDQVPVGKEQYQRL 60
            MEVARSKEGISVSQRK TLDLLTETGMLGC PADTPIEF  KLGNSDDQVPV KEQYQRL
Sbjct: 1327 MEVARSKEGISVSQRKYTLDLLTETGMLGCRPADTPIEFNCKLGNSDDQVPVDKEQYQRL 1386

Query: 61   VGKLIYLSHTCPDISFVVSAVSQFMQAPYEKHMEAVKRILRYLKTTPGKGLMFKKTDKKT 120
            VGKLIYLSHT PDISF VS VSQFMQAPYEKHMEAV RILRYLK TPGKGLMF+KT++KT
Sbjct: 1387 VGKLIYLSHTRPDISFAVSVVSQFMQAPYEKHMEAVNRILRYLKNTPGKGLMFRKTNRKT 1446

Query: 121  IVAYTDSD 129
            I AYTDSD
Sbjct: 1447 IEAYTDSD 1454

[Close]

BLAST of Cmc08g0223881 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 104.0 bits (258), Expect = 9.2e-23
Identity = 52/127 (40.94%), Postives = 78/127 (61.42%), Query Frame = 0


Query: 1   MEVARSKEGISVSQRKCTLDLLTETGMLGCHPADTPIEFKRKLGNSDDQVPVGKEQYQRL 60
           +E+ARS  GI++ QRK  LDLL ETG+LGC P+  P++             V  + Y+RL
Sbjct: 322 LEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAKAYRRL 381

Query: 61  VGKLIYLSHTCPDISFVVSAVSQFMQAPYEKHMEAVKRILRYLKTTPGKGLMFKKTDKKT 120
           +G+L+YL  T  DISF V+ +SQF +AP   H +AV +IL Y+K T G+GL +    +  
Sbjct: 382 IGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQ 441

Query: 121 IVAYTDS 128
           +  ++D+
Sbjct: 442 LQVFSDA 448

[Close]

BLAST of Cmc08g0223881 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 79.3 bits (194), Expect = 2.4e-15
Identity = 45/128 (35.16%), Postives = 65/128 (50.78%), Query Frame = 0


Query: 1   MEVARSKEGISVSQRKCTLDLLTETGMLGCHPADTPIEFKRKLGNSDDQVPVGKEQYQRL 60
           +++     G+ +SQ K    +L   GML C P  TP+  K     S  + P     ++ +
Sbjct: 45  IQIKTHPSGLFLSQTKYAEQILNNAGMLDCKPMSTPLPLKLNSSVSTAKYP-DPSDFRSI 104

Query: 61  VGKLIYLSHTCPDISFVVSAVSQFMQAPYEKHMEAVKRILRYLKTTPGKGLMFKKTDKKT 120
           VG L YL+ T PDIS+ V+ V Q M  P     + +KR+LRY+K T   GL   K  K  
Sbjct: 105 VGALQYLTLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLN 164

Query: 121 IVAYTDSD 129
           + A+ DSD
Sbjct: 165 VQAFCDSD 171

[Close]

BLAST of Cmc08g0223881 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 54.7 bits (130), Expect = 6.4e-08
Identity = 26/64 (40.62%), Postives = 40/64 (62.50%), Query Frame = 0


Query: 65  IYLSHTCPDISFVVSAVSQFMQAPYEKHMEAVKRILRYLKTTPGKGLMFKKTDKKTIVAY 124
           +YL+ T PD++F V+ +SQF  A     M+AV ++L Y+K T G+GL +  T    + A+
Sbjct: 1   MYLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAF 60

Query: 125 TDSD 129
            DSD
Sbjct: 61  ADSD 64

The following BLAST results are available for this feature:

BLAST of Cmc08g0223881 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0045027.1	5.4e-57	92.19	Beta-galactosidase [Cucumis melo var. makuwa] >TYJ96299.1 Beta-galactosidase [Cu...	[more]
TYK23097.1	1.6e-56	91.41	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0025138.1	1.6e-56	91.41	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0067540.1	2.7e-56	89.06	Beta-galactosidase [Cucumis melo var. makuwa]	[more]
TYJ99952.1	5.9e-56	89.06	Beta-galactosidase [Cucumis melo var. makuwa] >TYK02395.1 Beta-galactosidase [Cu...	[more]

BLAST of Cmc08g0223881 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94HW2	3.8e-21	41.41	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	2.4e-20	41.09	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P92519	3.4e-14	35.16	Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 ...	[more]
P10978	3.0e-10	34.35	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P25600	1.8e-07	37.50	Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain AT...	[more]

BLAST of Cmc08g0223881 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BBC2	2.6e-57	92.19	Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold78209...	[more]
A0A5A7SG80	7.6e-57	91.41	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3DHC0	7.6e-57	91.41	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7VK49	1.3e-56	89.06	Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold50G00...	[more]
A0A5D3BJK7	2.9e-56	89.06	Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G0...	[more]

BLAST of Cmc08g0223881 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	9.2e-23	40.94	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	2.4e-15	35.16	DNA/RNA polymerases superfamily protein	[more]
ATMG00240.1	6.4e-08	40.63	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 35..128
None	No IPR available	PANTHER	PTHR11439:SF335	SUBFAMILY NOT NAMED	coord: 35..128
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 7..126

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0223881.1	Cmc08g0223881.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0032456	endocytic recycling
biological_process	GO:0016310	phosphorylation
biological_process	GO:0015031	protein transport
cellular_component	GO:0005768	endosome
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0016884	carbon-nitrogen ligase activity, with glutamine as amido-N-donor
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0003676	nucleic acid binding