Cmc08g0223871 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0223871
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Beta-galactosidase
Location	CMiso1.1chr08: 13519910 .. 13520776 (+)
RNA-Seq Expression	Cmc08g0223871
Synteny	Cmc08g0223871

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGATACCTCCGACAGTAGTATCTCTACGACTAGTTTACTGTCTTCCTATTTTAGCACCTCTGAACATGACTTTATGTTTGTGGCATTTTCGATTAGGTCACCCAAACTTTACGTATATGAAATATTTGTTTCCCCATCTCTTTCTTAAAATAGATGTCTCCTCGTTATCTTGTGATGTGTGCATTCGGGCAAAACAACATCGTGTTTCTTTTCCCTCACGACCATATAAACCCACACAACCGTTTACCCTTATCCACAGTGACGTTTGGGGTCCCTCCAAGGTCACCACCTCATCTGGGAAAAGGTGGTTTGTAACCTTCATTGATGATCATACCCGTCTTACCTGGGTCTACCTTATCACCGATAAATCTGAGGTTTCTGCTATTTTCCAAAACTTCTATCACACCATTGAAACACAATTCCATAAAAAAATTGCTATTCTTCTAAGTGACAACGGTCGGGAATTCCAAAACCATAACCTTAGTGAATTTCTAGCCTCTAAGGGGATTGTTCACCCAAACTCGTGCGCCTACACTCAACAAAATAGAGTGGCCGAGCGAAAAAATCGTCACCTTTTGAAAGTAGCCCGTTCCCTTATGCTTTCCACTTCCCTTCCTTCATACCTGTGGGGAGATGCTATTCTTACAGCAGCTCATTTAATCAATAGAATGTCCTCTCGTATCCTCCACCTTCAAACTCCCTTGGAATGCCTTAAGGAGTCCTACCCCTCTACTCGTCTCGTTTCAAAGGTTCCTCTTCGTGTGTTTGGGTGTACCGCTTATGTCCATAGTTTTTGCCCTAATCAGACCAAATTTACCCCTCGGGCTCAGGCTTGTGTGTTTGTTGGGTATCCCCTTCACTAA

mRNA sequence

ATGATGATACCTCCGACAGTAGTATCTCTACGACTAGTTTACTGTCTTCCTATTTTAGCACCTCTGAACATGACTTTATGTTTGTGGCATTTTCGATTAGGTCACCCAAACTTTACGTATATGAAATATTTGTTTCCCCATCTCTTTCTTAAAATAGATGTCTCCTCGTTATCTTGTGATGTGTGCATTCGGGCAAAACAACATCGTGTTTCTTTTCCCTCACGACCATATAAACCCACACAACCGTTTACCCTTATCCACAGTGACGTTTGGGGTCCCTCCAAGGTCACCACCTCATCTGGGAAAAGGTGGTTTGTAACCTTCATTGATGATCATACCCGTCTTACCTGGGTCTACCTTATCACCGATAAATCTGAGGTTTCTGCTATTTTCCAAAACTTCTATCACACCATTGAAACACAATTCCATAAAAAAATTGCTATTCTTCTAAGTGACAACGGTCGGGAATTCCAAAACCATAACCTTAGTGAATTTCTAGCCTCTAAGGGGATTGTTCACCCAAACTCGTGCGCCTACACTCAACAAAATAGAGTGGCCGAGCGAAAAAATCGTCACCTTTTGAAAGTAGCCCGTTCCCTTATGCTTTCCACTTCCCTTCCTTCATACCTGTGGGGAGATGCTATTCTTACAGCAGCTCATTTAATCAATAGAATGTCCTCTCGTATCCTCCACCTTCAAACTCCCTTGGAATGCCTTAAGGAGTCCTACCCCTCTACTCGTCTCGTTTCAAAGGTTCCTCTTCGTGTGTTTGGGTGTACCGCTTATGTCCATAGTTTTTGCCCTAATCAGACCAAATTTACCCCTCGGGCTCAGGCTTGTGTGTTTGTTGGGTATCCCCTTCACTAA

Coding sequence (CDS)

ATGATGATACCTCCGACAGTAGTATCTCTACGACTAGTTTACTGTCTTCCTATTTTAGCACCTCTGAACATGACTTTATGTTTGTGGCATTTTCGATTAGGTCACCCAAACTTTACGTATATGAAATATTTGTTTCCCCATCTCTTTCTTAAAATAGATGTCTCCTCGTTATCTTGTGATGTGTGCATTCGGGCAAAACAACATCGTGTTTCTTTTCCCTCACGACCATATAAACCCACACAACCGTTTACCCTTATCCACAGTGACGTTTGGGGTCCCTCCAAGGTCACCACCTCATCTGGGAAAAGGTGGTTTGTAACCTTCATTGATGATCATACCCGTCTTACCTGGGTCTACCTTATCACCGATAAATCTGAGGTTTCTGCTATTTTCCAAAACTTCTATCACACCATTGAAACACAATTCCATAAAAAAATTGCTATTCTTCTAAGTGACAACGGTCGGGAATTCCAAAACCATAACCTTAGTGAATTTCTAGCCTCTAAGGGGATTGTTCACCCAAACTCGTGCGCCTACACTCAACAAAATAGAGTGGCCGAGCGAAAAAATCGTCACCTTTTGAAAGTAGCCCGTTCCCTTATGCTTTCCACTTCCCTTCCTTCATACCTGTGGGGAGATGCTATTCTTACAGCAGCTCATTTAATCAATAGAATGTCCTCTCGTATCCTCCACCTTCAAACTCCCTTGGAATGCCTTAAGGAGTCCTACCCCTCTACTCGTCTCGTTTCAAAGGTTCCTCTTCGTGTGTTTGGGTGTACCGCTTATGTCCATAGTTTTTGCCCTAATCAGACCAAATTTACCCCTCGGGCTCAGGCTTGTGTGTTTGTTGGGTATCCCCTTCACTAA

Protein sequence

MMIPPTVVSLRLVYCLPILAPLNMTLCLWHFRLGHPNFTYMKYLFPHLFLKIDVSSLSCDVCIRAKQHRVSFPSRPYKPTQPFTLIHSDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLITDKSEVSAIFQNFYHTIETQFHKKIAILLSDNGREFQNHNLSEFLASKGIVHPNSCAYTQQNRVAERKNRHLLKVARSLMLSTSLPSYLWGDAILTAAHLINRMSSRILHLQTPLECLKESYPSTRLVSKVPLRVFGCTAYVHSFCPNQTKFTPRAQACVFVGYPLH

Homology

[Close]

BLAST of Cmc08g0223871 vs. NCBI nr
Match: TYJ99952.1 (Beta-galactosidase [Cucumis melo var. makuwa] >TYK02395.1 Beta-galactosidase [Cucumis melo var. makuwa])

HSP 1 Score: 500.7 bits (1288), Expect = 8.2e-138
Identity = 239/262 (91.22%), Postives = 251/262 (95.80%), Query Frame = 0


Query: 28  LWHFRLGHPNFTYMKYLFPHLFLKIDVSSLSCDVCIRAKQHRVSFPSRPYKPTQPFTLIH 87
           LWHFRLGHPNFTYM++LFPHLF K+DVSSLSCDVCIRAKQHRVSFPS+PYKPTQPF LIH
Sbjct: 621 LWHFRLGHPNFTYMQHLFPHLFSKVDVSSLSCDVCIRAKQHRVSFPSQPYKPTQPFNLIH 680

Query: 88  SDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLITDKSEVSAIFQNFYHTIETQFHKKIA 147
           SDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLI+DKSEV +IFQNFYHTI+TQFH KIA
Sbjct: 681 SDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLISDKSEVPSIFQNFYHTIKTQFHTKIA 740

Query: 148 ILLSDNGREFQNHNLSEFLASKGIVHPNSCAYT-QQNRVAERKNRHLLKVARSLMLSTSL 207
           IL SDNGREFQNHNLSEFLASKGIVH  SCAYT QQN VAERKNRHL++VARSLMLSTSL
Sbjct: 741 ILRSDNGREFQNHNLSEFLASKGIVHQTSCAYTPQQNGVAERKNRHLVEVARSLMLSTSL 800

Query: 208 PSYLWGDAILTAAHLINRMSSRILHLQTPLECLKESYPSTRLVSKVPLRVFGCTAYVHSF 267
           PSYLWGDAILTAAHLINRM SRILHLQTPL+CLKESYPSTRLVS+VPLRVFGCTAYVH+F
Sbjct: 801 PSYLWGDAILTAAHLINRMPSRILHLQTPLDCLKESYPSTRLVSEVPLRVFGCTAYVHNF 860

Query: 268 CPNQTKFTPRAQACVFVGYPLH 289
            PNQTKFTPRAQACVFVGYPLH
Sbjct: 861 GPNQTKFTPRAQACVFVGYPLH 882

[Close]

BLAST of Cmc08g0223871 vs. NCBI nr
Match: TYK08054.1 (Beta-galactosidase [Cucumis melo var. makuwa])

HSP 1 Score: 500.7 bits (1288), Expect = 8.2e-138
Identity = 239/262 (91.22%), Postives = 251/262 (95.80%), Query Frame = 0


Query: 28  LWHFRLGHPNFTYMKYLFPHLFLKIDVSSLSCDVCIRAKQHRVSFPSRPYKPTQPFTLIH 87
           LWHFRLGHPNFTYM++LFPHLF K+DVSSLSCDVCIRAKQHRVSFPS+PYKPTQPF LIH
Sbjct: 621 LWHFRLGHPNFTYMQHLFPHLFSKVDVSSLSCDVCIRAKQHRVSFPSQPYKPTQPFNLIH 680

Query: 88  SDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLITDKSEVSAIFQNFYHTIETQFHKKIA 147
           SDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLI+DKSEV +IFQNFYHTI+TQFH KIA
Sbjct: 681 SDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLISDKSEVPSIFQNFYHTIKTQFHTKIA 740

Query: 148 ILLSDNGREFQNHNLSEFLASKGIVHPNSCAYT-QQNRVAERKNRHLLKVARSLMLSTSL 207
           IL SDNGREFQNHNLSEFLASKGIVH  SCAYT QQN VAERKNRHL++VARSLMLSTSL
Sbjct: 741 ILRSDNGREFQNHNLSEFLASKGIVHQTSCAYTPQQNGVAERKNRHLVEVARSLMLSTSL 800

Query: 208 PSYLWGDAILTAAHLINRMSSRILHLQTPLECLKESYPSTRLVSKVPLRVFGCTAYVHSF 267
           PSYLWGDAILTAAHLINRM SRILHLQTPL+CLKESYPSTRLVS+VPLRVFGCTAYVH+F
Sbjct: 801 PSYLWGDAILTAAHLINRMPSRILHLQTPLDCLKESYPSTRLVSEVPLRVFGCTAYVHNF 860

Query: 268 CPNQTKFTPRAQACVFVGYPLH 289
            PNQTKFTPRAQACVFVGYPLH
Sbjct: 861 GPNQTKFTPRAQACVFVGYPLH 882

[Close]

BLAST of Cmc08g0223871 vs. NCBI nr
Match: KAA0048203.1 (Beta-galactosidase [Cucumis melo var. makuwa])

HSP 1 Score: 500.7 bits (1288), Expect = 8.2e-138
Identity = 239/262 (91.22%), Postives = 251/262 (95.80%), Query Frame = 0


Query: 28  LWHFRLGHPNFTYMKYLFPHLFLKIDVSSLSCDVCIRAKQHRVSFPSRPYKPTQPFTLIH 87
           LWHFRLGHPNFTYM++LFPHLF K+DVSSLSCDVCIRAKQHRVSFPS+PYKPTQPF LIH
Sbjct: 621 LWHFRLGHPNFTYMQHLFPHLFSKVDVSSLSCDVCIRAKQHRVSFPSQPYKPTQPFNLIH 680

Query: 88  SDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLITDKSEVSAIFQNFYHTIETQFHKKIA 147
           SDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLI+DKSEV +IFQNFYHTI+TQFH KIA
Sbjct: 681 SDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLISDKSEVPSIFQNFYHTIKTQFHTKIA 740

Query: 148 ILLSDNGREFQNHNLSEFLASKGIVHPNSCAYT-QQNRVAERKNRHLLKVARSLMLSTSL 207
           IL SDNGREFQNHNLSEFLASKGIVH  SCAYT QQN VAERKNRHL++VARSLMLSTSL
Sbjct: 741 ILRSDNGREFQNHNLSEFLASKGIVHQTSCAYTPQQNGVAERKNRHLVEVARSLMLSTSL 800

Query: 208 PSYLWGDAILTAAHLINRMSSRILHLQTPLECLKESYPSTRLVSKVPLRVFGCTAYVHSF 267
           PSYLWGDAILTAAHLINRM SRILHLQTPL+CLKESYPSTRLVS+VPLRVFGCTAYVH+F
Sbjct: 801 PSYLWGDAILTAAHLINRMPSRILHLQTPLDCLKESYPSTRLVSEVPLRVFGCTAYVHNF 860

Query: 268 CPNQTKFTPRAQACVFVGYPLH 289
            PNQTKFTPRAQACVFVGYPLH
Sbjct: 861 GPNQTKFTPRAQACVFVGYPLH 882

[Close]

BLAST of Cmc08g0223871 vs. NCBI nr
Match: KAA0025363.1 (Beta-galactosidase [Cucumis melo var. makuwa])

HSP 1 Score: 500.7 bits (1288), Expect = 8.2e-138
Identity = 239/262 (91.22%), Postives = 251/262 (95.80%), Query Frame = 0


Query: 28  LWHFRLGHPNFTYMKYLFPHLFLKIDVSSLSCDVCIRAKQHRVSFPSRPYKPTQPFTLIH 87
           LWHFRLGHPNFTYM++LFPHLF K+DVSSLSCDVCIRAKQHRVSFPS+PYKPTQPF LIH
Sbjct: 653 LWHFRLGHPNFTYMQHLFPHLFSKVDVSSLSCDVCIRAKQHRVSFPSQPYKPTQPFNLIH 712

Query: 88  SDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLITDKSEVSAIFQNFYHTIETQFHKKIA 147
           SDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLI+DKSEV +IFQNFYHTI+TQFH KIA
Sbjct: 713 SDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLISDKSEVPSIFQNFYHTIKTQFHTKIA 772

Query: 148 ILLSDNGREFQNHNLSEFLASKGIVHPNSCAYT-QQNRVAERKNRHLLKVARSLMLSTSL 207
           IL SDNGREFQNHNLSEFLASKGIVH  SCAYT QQN VAERKNRHL++VARSLMLSTSL
Sbjct: 773 ILRSDNGREFQNHNLSEFLASKGIVHQTSCAYTPQQNGVAERKNRHLVEVARSLMLSTSL 832

Query: 208 PSYLWGDAILTAAHLINRMSSRILHLQTPLECLKESYPSTRLVSKVPLRVFGCTAYVHSF 267
           PSYLWGDAILTAAHLINRM SRILHLQTPL+CLKESYPSTRLVS+VPLRVFGCTAYVH+F
Sbjct: 833 PSYLWGDAILTAAHLINRMPSRILHLQTPLDCLKESYPSTRLVSEVPLRVFGCTAYVHNF 892

Query: 268 CPNQTKFTPRAQACVFVGYPLH 289
            PNQTKFTPRAQACVFVGYPLH
Sbjct: 893 GPNQTKFTPRAQACVFVGYPLH 914

[Close]

BLAST of Cmc08g0223871 vs. NCBI nr
Match: KAA0034386.1 (Beta-galactosidase [Cucumis melo var. makuwa])

HSP 1 Score: 500.7 bits (1288), Expect = 8.2e-138
Identity = 239/262 (91.22%), Postives = 251/262 (95.80%), Query Frame = 0


Query: 28  LWHFRLGHPNFTYMKYLFPHLFLKIDVSSLSCDVCIRAKQHRVSFPSRPYKPTQPFTLIH 87
           LWHFRLGHPNFTYM++LFPHLF K+DVSSLSCDVCIRAKQHRVSFPS+PYKPTQPF LIH
Sbjct: 678 LWHFRLGHPNFTYMQHLFPHLFSKVDVSSLSCDVCIRAKQHRVSFPSQPYKPTQPFNLIH 737

Query: 88  SDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLITDKSEVSAIFQNFYHTIETQFHKKIA 147
           SDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLI+DKSEV +IFQNFYHTI+TQFH KIA
Sbjct: 738 SDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLISDKSEVPSIFQNFYHTIKTQFHTKIA 797

Query: 148 ILLSDNGREFQNHNLSEFLASKGIVHPNSCAYT-QQNRVAERKNRHLLKVARSLMLSTSL 207
           IL SDNGREFQNHNLSEFLASKGIVH  SCAYT QQN VAERKNRHL++VARSLMLSTSL
Sbjct: 798 ILRSDNGREFQNHNLSEFLASKGIVHQTSCAYTPQQNGVAERKNRHLVEVARSLMLSTSL 857

Query: 208 PSYLWGDAILTAAHLINRMSSRILHLQTPLECLKESYPSTRLVSKVPLRVFGCTAYVHSF 267
           PSYLWGDAILTAAHLINRM SRILHLQTPL+CLKESYPSTRLVS+VPLRVFGCTAYVH+F
Sbjct: 858 PSYLWGDAILTAAHLINRMPSRILHLQTPLDCLKESYPSTRLVSEVPLRVFGCTAYVHNF 917

Query: 268 CPNQTKFTPRAQACVFVGYPLH 289
            PNQTKFTPRAQACVFVGYPLH
Sbjct: 918 GPNQTKFTPRAQACVFVGYPLH 939

[Close]

BLAST of Cmc08g0223871 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 5.1e-42
Identity = 94/261 (36.02%), Postives = 143/261 (54.79%), Query Frame = 0


Query: 28  LWHFRLGHPNFTYMKYLFPHLFLKI--DVSSLSCDVCIRAKQHRVSFPSRPYKPTQPFTL 87
           LWH R+GH +   ++ L     +      +   CD C+  KQHRVSF +   +      L
Sbjct: 424 LWHKRMGHMSEKGLQILAKKSLISYAKGTTVKPCDYCLFGKQHRVSFQTSSERKLNILDL 483

Query: 88  IHSDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLITDKSEVSAIFQNFYHTIETQFHKK 147
           ++SDV GP ++ +  G ++FVTFIDD +R  WVY++  K +V  +FQ F+  +E +  +K
Sbjct: 484 VYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYILKTKDQVFQVFQKFHALVERETGRK 543

Query: 148 IAILLSDNGREFQNHNLSEFLASKGIVHPNSCAYT-QQNRVAERKNRHLLKVARSLMLST 207
           +  L SDNG E+ +    E+ +S GI H  +   T Q N VAER NR +++  RS++   
Sbjct: 544 LKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQHNGVAERMNRTIVEKVRSMLRMA 603

Query: 208 SLPSYLWGDAILTAAHLINRMSSRILHLQTPLECLKESYPSTRLVSKVPLRVFGCTAYVH 267
            LP   WG+A+ TA +LINR  S  L  + P     E   + + VS   L+VFGC A+ H
Sbjct: 604 KLPKSFWGEAVQTACYLINRSPSVPLAFEIP-----ERVWTNKEVSYSHLKVFGCRAFAH 663

Query: 268 SFCPNQTKFTPRAQACVFVGY 286
                +TK   ++  C+F+GY
Sbjct: 664 VPKEQRTKLDDKSIPCIFIGY 679

[Close]

BLAST of Cmc08g0223871 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.4e-36
Identity = 91/263 (34.60%), Postives = 139/263 (52.85%), Query Frame = 0


Query: 29  WHFRLGHPNFTYMKYLFPHLFLKIDVSS---LSCDVCIRAKQHRVSFPSRPYKPTQPFTL 88
           WH RLGHP  + +  +  +  L +   S   LSC  C+  K ++V F       T+P   
Sbjct: 467 WHARLGHPAPSILNSVISNYSLSVLNPSHKFLSCSDCLINKSNKVPFSQSTINSTRPLEY 526

Query: 89  IHSDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLITDKSEVSAIFQNFYHTIETQFHKK 148
           I+SDVW  S + +    R++V F+D  TR TW+Y +  KS+V   F  F + +E +F  +
Sbjct: 527 IYSDVWS-SPILSHDNYRYYVIFVDHFTRYTWLYPLKQKSQVKETFITFKNLLENRFQTR 586

Query: 149 IAILLSDNGREFQNHNLSEFLASKGIVHPNSCAYT-QQNRVAERKNRHLLKVARSLMLST 208
           I    SDNG EF    L E+ +  GI H  S  +T + N ++ERK+RH+++   +L+   
Sbjct: 587 IGTFYSDNGGEFV--ALWEYFSQHGISHLTSPPHTPEHNGLSERKHRHIVETGLTLLSHA 646

Query: 209 SLPSYLWGDAILTAAHLINRMSSRILHLQTPLECLKESYPSTRLVSKVPLRVFGCTAYVH 268
           S+P   W  A   A +LINR+ + +L L++P + L  + P+        LRVFGC  Y  
Sbjct: 647 SIPKTYWPYAFAVAVYLINRLPTPLLQLESPFQKLFGTSPNYD-----KLRVFGCACYPW 706

Query: 269 SFCPNQTKFTPRAQACVFVGYPL 288
               NQ K   +++ CVF+GY L
Sbjct: 707 LRPYNQHKLDDKSRQCVFLGYSL 721

[Close]

BLAST of Cmc08g0223871 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 7.1e-36
Identity = 90/263 (34.22%), Postives = 139/263 (52.85%), Query Frame = 0


Query: 29  WHFRLGHPNFTYMKYLFPHLFLKIDVSS---LSCDVCIRAKQHRVSFPSRPYKPTQPFTL 88
           WH RLGHP+   +  +  +  L +   S   LSC  C   K H+V F +     ++P   
Sbjct: 446 WHSRLGHPSLAILNSVISNHSLPVLNPSHKLLSCSDCFINKSHKVPFSNSTITSSKPLEY 505

Query: 89  IHSDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLITDKSEVSAIFQNFYHTIETQFHKK 148
           I+SDVW  S + +    R++V F+D  TR TW+Y +  KS+V   F  F   +E +F  +
Sbjct: 506 IYSDVWS-SPILSIDNYRYYVIFVDHFTRYTWLYPLKQKSQVKDTFIIFKSLVENRFQTR 565

Query: 149 IAILLSDNGREFQNHNLSEFLASKGIVHPNSCAYT-QQNRVAERKNRHLLKVARSLMLST 208
           I  L SDNG EF    L ++L+  GI H  S  +T + N ++ERK+RH++++  +L+   
Sbjct: 566 IGTLYSDNGGEFV--VLRDYLSQHGISHFTSPPHTPEHNGLSERKHRHIVEMGLTLLSHA 625

Query: 209 SLPSYLWGDAILTAAHLINRMSSRILHLQTPLECLKESYPSTRLVSKVPLRVFGCTAYVH 268
           S+P   W  A   A +LINR+ + +L LQ+P + L    P+        L+VFGC  Y  
Sbjct: 626 SVPKTYWPYAFSVAVYLINRLPTPLLQLQSPFQKLFGQPPNYE-----KLKVFGCACYPW 685

Query: 269 SFCPNQTKFTPRAQACVFVGYPL 288
               N+ K   +++ C F+GY L
Sbjct: 686 LRPYNRHKLEDKSKQCAFMGYSL 700

[Close]

BLAST of Cmc08g0223871 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 145.6 bits (366), Expect = 8.7e-34
Identity = 96/270 (35.56%), Postives = 139/270 (51.48%), Query Frame = 0


Query: 28  LWHFRLGHPNFTYM-----KYLF--PHLFLKIDVSSLSCDVCIRAKQHRVSFPSRPYKP- 87
           LWH R GH +   +     K +F    L   +++S   C+ C+  KQ R+ F     K  
Sbjct: 417 LWHERFGHISDGKLLEIKRKNMFSDQSLLNNLELSCEICEPCLNGKQARLPFKQLKDKTH 476

Query: 88  -TQPFTLIHSDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLITDKSEVSAIFQNFYHTI 147
             +P  ++HSDV GP    T   K +FV F+D  T     YLI  KS+V ++FQ+F    
Sbjct: 477 IKRPLFVVHSDVCGPITPVTLDDKNYFVIFVDQFTHYCVTYLIKYKSDVFSMFQDFVAKS 536

Query: 148 ETQFHKKIAILLSDNGREFQNHNLSEFLASKGIVHPNSCAYTQQ-NRVAERKNRHLLKVA 207
           E  F+ K+  L  DNGRE+ ++ + +F   KGI +  +  +T Q N V+ER  R + + A
Sbjct: 537 EAHFNLKVVYLYIDNGREYLSNEMRQFCVKKGISYHLTVPHTPQLNGVSERMIRTITEKA 596

Query: 208 RSLMLSTSLPSYLWGDAILTAAHLINRMSSRIL--HLQTPLECLKESYPSTRLVSKVPLR 267
           R+++    L    WG+A+LTA +LINR+ SR L    +TP E      P  +      LR
Sbjct: 597 RTMVSGAKLDKSFWGEAVLTATYLINRIPSRALVDSSKTPYEMWHNKKPYLK-----HLR 656

Query: 268 VFGCTAYVHSFCPNQTKFTPRAQACVFVGY 286
           VFG T YVH     Q KF  ++   +FVGY
Sbjct: 657 VFGATVYVH-IKNKQGKFDDKSFKSIFVGY 680

[Close]

BLAST of Cmc08g0223871 vs. ExPASy Swiss-Prot
Match: Q12491 (Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY2B-B PE=3 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.4e-18
Identity = 65/216 (30.09%), Postives = 111/216 (51.39%), Query Frame = 0


Query: 28  LWHFRLGHPNFTYMK---------YLFPHLFLKIDVSSLSCDVCI--RAKQHRVSFPSR- 87
           L H  LGH NF  ++         YL        + S+  C  C+  ++ +HR    SR 
Sbjct: 593 LIHRMLGHANFRSIQKSLKKNAVTYLKESDIEWSNASTYQCPDCLIGKSTKHRHVKGSRL 652

Query: 88  PYKPT-QPFTLIHSDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLITDKSEVSA--IFQ 147
            Y+ + +PF  +H+D++GP      S   +F++F D+ TR  WVY + D+ E S   +F 
Sbjct: 653 KYQESYEPFQYLHTDIFGPVHHLPKSAPSYFISFTDEKTRFQWVYPLHDRREESILNVFT 712

Query: 148 NFYHTIETQFHKKIAILLSDNGREFQNHNLSEFLASKGIVH-PNSCAYTQQNRVAERKNR 207
           +    I+ QF+ ++ ++  D G E+ N  L +F  ++GI     + A ++ + VAER NR
Sbjct: 713 SILAFIKNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGITACYTTTADSRAHGVAERLNR 772

Query: 208 HLLKVARSLMLSTSLPSYLWGDAILTAAHLINRMSS 228
            LL   R+L+  + LP++LW  A+  +  + N + S
Sbjct: 773 TLLNDCRTLLHCSGLPNHLWFSAVEFSTIIRNSLVS 808

[Close]

BLAST of Cmc08g0223871 vs. ExPASy TrEMBL
Match: A0A5D3BJK7 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G001020 PE=4 SV=1)

HSP 1 Score: 500.7 bits (1288), Expect = 4.0e-138
Identity = 239/262 (91.22%), Postives = 251/262 (95.80%), Query Frame = 0


Query: 28  LWHFRLGHPNFTYMKYLFPHLFLKIDVSSLSCDVCIRAKQHRVSFPSRPYKPTQPFTLIH 87
           LWHFRLGHPNFTYM++LFPHLF K+DVSSLSCDVCIRAKQHRVSFPS+PYKPTQPF LIH
Sbjct: 621 LWHFRLGHPNFTYMQHLFPHLFSKVDVSSLSCDVCIRAKQHRVSFPSQPYKPTQPFNLIH 680

Query: 88  SDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLITDKSEVSAIFQNFYHTIETQFHKKIA 147
           SDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLI+DKSEV +IFQNFYHTI+TQFH KIA
Sbjct: 681 SDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLISDKSEVPSIFQNFYHTIKTQFHTKIA 740

Query: 148 ILLSDNGREFQNHNLSEFLASKGIVHPNSCAYT-QQNRVAERKNRHLLKVARSLMLSTSL 207
           IL SDNGREFQNHNLSEFLASKGIVH  SCAYT QQN VAERKNRHL++VARSLMLSTSL
Sbjct: 741 ILRSDNGREFQNHNLSEFLASKGIVHQTSCAYTPQQNGVAERKNRHLVEVARSLMLSTSL 800

Query: 208 PSYLWGDAILTAAHLINRMSSRILHLQTPLECLKESYPSTRLVSKVPLRVFGCTAYVHSF 267
           PSYLWGDAILTAAHLINRM SRILHLQTPL+CLKESYPSTRLVS+VPLRVFGCTAYVH+F
Sbjct: 801 PSYLWGDAILTAAHLINRMPSRILHLQTPLDCLKESYPSTRLVSEVPLRVFGCTAYVHNF 860

Query: 268 CPNQTKFTPRAQACVFVGYPLH 289
            PNQTKFTPRAQACVFVGYPLH
Sbjct: 861 GPNQTKFTPRAQACVFVGYPLH 882

[Close]

BLAST of Cmc08g0223871 vs. ExPASy TrEMBL
Match: A0A5D3C4T4 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold10G00040 PE=4 SV=1)

HSP 1 Score: 500.7 bits (1288), Expect = 4.0e-138
Identity = 239/262 (91.22%), Postives = 251/262 (95.80%), Query Frame = 0


Query: 28  LWHFRLGHPNFTYMKYLFPHLFLKIDVSSLSCDVCIRAKQHRVSFPSRPYKPTQPFTLIH 87
           LWHFRLGHPNFTYM++LFPHLF K+DVSSLSCDVCIRAKQHRVSFPS+PYKPTQPF LIH
Sbjct: 621 LWHFRLGHPNFTYMQHLFPHLFSKVDVSSLSCDVCIRAKQHRVSFPSQPYKPTQPFNLIH 680

Query: 88  SDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLITDKSEVSAIFQNFYHTIETQFHKKIA 147
           SDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLI+DKSEV +IFQNFYHTI+TQFH KIA
Sbjct: 681 SDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLISDKSEVPSIFQNFYHTIKTQFHTKIA 740

Query: 148 ILLSDNGREFQNHNLSEFLASKGIVHPNSCAYT-QQNRVAERKNRHLLKVARSLMLSTSL 207
           IL SDNGREFQNHNLSEFLASKGIVH  SCAYT QQN VAERKNRHL++VARSLMLSTSL
Sbjct: 741 ILRSDNGREFQNHNLSEFLASKGIVHQTSCAYTPQQNGVAERKNRHLVEVARSLMLSTSL 800

Query: 208 PSYLWGDAILTAAHLINRMSSRILHLQTPLECLKESYPSTRLVSKVPLRVFGCTAYVHSF 267
           PSYLWGDAILTAAHLINRM SRILHLQTPL+CLKESYPSTRLVS+VPLRVFGCTAYVH+F
Sbjct: 801 PSYLWGDAILTAAHLINRMPSRILHLQTPLDCLKESYPSTRLVSEVPLRVFGCTAYVHNF 860

Query: 268 CPNQTKFTPRAQACVFVGYPLH 289
            PNQTKFTPRAQACVFVGYPLH
Sbjct: 861 GPNQTKFTPRAQACVFVGYPLH 882

[Close]

BLAST of Cmc08g0223871 vs. ExPASy TrEMBL
Match: A0A5A7VLQ7 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold115G00690 PE=4 SV=1)

HSP 1 Score: 500.7 bits (1288), Expect = 4.0e-138
Identity = 239/262 (91.22%), Postives = 251/262 (95.80%), Query Frame = 0


Query: 28  LWHFRLGHPNFTYMKYLFPHLFLKIDVSSLSCDVCIRAKQHRVSFPSRPYKPTQPFTLIH 87
           LWHFRLGHPNFTYM++LFPHLF K+DVSSLSCDVCIRAKQHRVSFPS+PYKPTQPF LIH
Sbjct: 621 LWHFRLGHPNFTYMQHLFPHLFSKVDVSSLSCDVCIRAKQHRVSFPSQPYKPTQPFNLIH 680

Query: 88  SDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLITDKSEVSAIFQNFYHTIETQFHKKIA 147
           SDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLI+DKSEV +IFQNFYHTI+TQFH KIA
Sbjct: 681 SDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLISDKSEVPSIFQNFYHTIKTQFHTKIA 740

Query: 148 ILLSDNGREFQNHNLSEFLASKGIVHPNSCAYT-QQNRVAERKNRHLLKVARSLMLSTSL 207
           IL SDNGREFQNHNLSEFLASKGIVH  SCAYT QQN VAERKNRHL++VARSLMLSTSL
Sbjct: 741 ILRSDNGREFQNHNLSEFLASKGIVHQTSCAYTPQQNGVAERKNRHLVEVARSLMLSTSL 800

Query: 208 PSYLWGDAILTAAHLINRMSSRILHLQTPLECLKESYPSTRLVSKVPLRVFGCTAYVHSF 267
           PSYLWGDAILTAAHLINRM SRILHLQTPL+CLKESYPSTRLVS+VPLRVFGCTAYVH+F
Sbjct: 801 PSYLWGDAILTAAHLINRMPSRILHLQTPLDCLKESYPSTRLVSEVPLRVFGCTAYVHNF 860

Query: 268 CPNQTKFTPRAQACVFVGYPLH 289
            PNQTKFTPRAQACVFVGYPLH
Sbjct: 861 GPNQTKFTPRAQACVFVGYPLH 882

[Close]

BLAST of Cmc08g0223871 vs. ExPASy TrEMBL
Match: A0A5A7SM64 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold130G00220 PE=4 SV=1)

HSP 1 Score: 500.7 bits (1288), Expect = 4.0e-138
Identity = 239/262 (91.22%), Postives = 251/262 (95.80%), Query Frame = 0


Query: 28  LWHFRLGHPNFTYMKYLFPHLFLKIDVSSLSCDVCIRAKQHRVSFPSRPYKPTQPFTLIH 87
           LWHFRLGHPNFTYM++LFPHLF K+DVSSLSCDVCIRAKQHRVSFPS+PYKPTQPF LIH
Sbjct: 621 LWHFRLGHPNFTYMQHLFPHLFSKVDVSSLSCDVCIRAKQHRVSFPSQPYKPTQPFNLIH 680

Query: 88  SDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLITDKSEVSAIFQNFYHTIETQFHKKIA 147
           SDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLI+DKSEV +IFQNFYHTI+TQFH KIA
Sbjct: 681 SDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLISDKSEVPSIFQNFYHTIKTQFHTKIA 740

Query: 148 ILLSDNGREFQNHNLSEFLASKGIVHPNSCAYT-QQNRVAERKNRHLLKVARSLMLSTSL 207
           IL SDNGREFQNHNLSEFLASKGIVH  SCAYT QQN VAERKNRHL++VARSLMLSTSL
Sbjct: 741 ILRSDNGREFQNHNLSEFLASKGIVHQTSCAYTPQQNGVAERKNRHLVEVARSLMLSTSL 800

Query: 208 PSYLWGDAILTAAHLINRMSSRILHLQTPLECLKESYPSTRLVSKVPLRVFGCTAYVHSF 267
           PSYLWGDAILTAAHLINRM SRILHLQTPL+CLKESYPSTRLVS+VPLRVFGCTAYVH+F
Sbjct: 801 PSYLWGDAILTAAHLINRMPSRILHLQTPLDCLKESYPSTRLVSEVPLRVFGCTAYVHNF 860

Query: 268 CPNQTKFTPRAQACVFVGYPLH 289
            PNQTKFTPRAQACVFVGYPLH
Sbjct: 861 GPNQTKFTPRAQACVFVGYPLH 882

[Close]

BLAST of Cmc08g0223871 vs. ExPASy TrEMBL
Match: A0A5A7V0Y9 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G00520 PE=4 SV=1)

HSP 1 Score: 500.7 bits (1288), Expect = 4.0e-138
Identity = 239/262 (91.22%), Postives = 251/262 (95.80%), Query Frame = 0


Query: 28   LWHFRLGHPNFTYMKYLFPHLFLKIDVSSLSCDVCIRAKQHRVSFPSRPYKPTQPFTLIH 87
            LWHFRLGHPNFTYM++LFPHLF K+DVSSLSCDVCIRAKQHRVSFPS+PYKPTQPF LIH
Sbjct: 896  LWHFRLGHPNFTYMQHLFPHLFSKVDVSSLSCDVCIRAKQHRVSFPSQPYKPTQPFNLIH 955

Query: 88   SDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLITDKSEVSAIFQNFYHTIETQFHKKIA 147
            SDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLI+DKSEV +IFQNFYHTI+TQFH KIA
Sbjct: 956  SDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLISDKSEVPSIFQNFYHTIKTQFHTKIA 1015

Query: 148  ILLSDNGREFQNHNLSEFLASKGIVHPNSCAYT-QQNRVAERKNRHLLKVARSLMLSTSL 207
            IL SDNGREFQNHNLSEFLASKGIVH  SCAYT QQN VAERKNRHL++VARSLMLSTSL
Sbjct: 1016 ILRSDNGREFQNHNLSEFLASKGIVHQTSCAYTPQQNGVAERKNRHLVEVARSLMLSTSL 1075

Query: 208  PSYLWGDAILTAAHLINRMSSRILHLQTPLECLKESYPSTRLVSKVPLRVFGCTAYVHSF 267
            PSYLWGDAILTAAHLINRM SRILHLQTPL+CLKESYPSTRLVS+VPLRVFGCTAYVH+F
Sbjct: 1076 PSYLWGDAILTAAHLINRMPSRILHLQTPLDCLKESYPSTRLVSEVPLRVFGCTAYVHNF 1135

Query: 268  CPNQTKFTPRAQACVFVGYPLH 289
             PNQTKFTPRAQACVFVGYPLH
Sbjct: 1136 GPNQTKFTPRAQACVFVGYPLH 1157

The following BLAST results are available for this feature:

BLAST of Cmc08g0223871 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ99952.1	8.2e-138	91.22	Beta-galactosidase [Cucumis melo var. makuwa] >TYK02395.1 Beta-galactosidase [Cu...	[more]
TYK08054.1	8.2e-138	91.22	Beta-galactosidase [Cucumis melo var. makuwa]	[more]
KAA0048203.1	8.2e-138	91.22	Beta-galactosidase [Cucumis melo var. makuwa]	[more]
KAA0025363.1	8.2e-138	91.22	Beta-galactosidase [Cucumis melo var. makuwa]	[more]
KAA0034386.1	8.2e-138	91.22	Beta-galactosidase [Cucumis melo var. makuwa]	[more]

BLAST of Cmc08g0223871 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	5.1e-42	36.02	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q94HW2	1.4e-36	34.60	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	7.1e-36	34.22	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P04146	8.7e-34	35.56	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q12491	1.4e-18	30.09	Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of Cmc08g0223871 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BJK7	4.0e-138	91.22	Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G0...	[more]
A0A5D3C4T4	4.0e-138	91.22	Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold10G00...	[more]
A0A5A7VLQ7	4.0e-138	91.22	Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold115G0...	[more]
A0A5A7SM64	4.0e-138	91.22	Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold130G0...	[more]
A0A5A7V0Y9	4.0e-138	91.22	Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G00...	[more]

BLAST of Cmc08g0223871 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 74..254 e-value: 3.5E-36 score: 126.4
IPR025724	GAG-pre-integrase domain	PFAM	PF13976	gag_pre-integrs	coord: 28..67 e-value: 3.6E-11 score: 42.7
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 80..179 e-value: 1.9E-14 score: 53.8
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 78..243 score: 19.191778
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 26..223
None	No IPR available	PANTHER	PTHR11439:SF324	RIBONUCLEASE H-LIKE DOMAIN, GAG-PRE-INTEGRASE DOMAIN, GAG-POLYPEPTIDE OF LTR COPIA-TYPE-RELATED	coord: 26..223
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 75..241

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0223871.1	Cmc08g0223871.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006116	NADH oxidation
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005777	peroxisome
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0003954	NADH dehydrogenase activity
molecular_function	GO:0003676	nucleic acid binding