Cmc08g0223531 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0223531
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr08: 13056731 .. 13057156 (-)
RNA-Seq Expression	Cmc08g0223531
Synteny	Cmc08g0223531

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGAAGTTGAAAATGAATCAGGTAAAACAATAAAGACATTTCGATCAGATCGAGGTGAAGAGTATATGGACTTACGATTCCAAGACTATTTGATAGAACATGGAATCCAATCACAACTCTCTGCACCTAGTACGCCTCAGCAGAACGGTGTATCAGAAAGAAGAAACCTAACTTTGTTAGATATGGTTCGCTCTATGATGAGTTTTTCTCGGTTGTCAGATTCTTTTTGGGGATATGCTTTAGAAATAACTATCTATATTTTAAACAACGTTCCCTCTAAAAGTATTTTTGAAACACTTTATGAGCTATGGAAAGGGCGTAAAGGTAGTTTATGTCACTTCAGGATTTGGGGATGTCCAGCACACGTGTTGGTGCAAAACCTTAAAAAGTTAGAACGTCGTTCAAAATTATCATATTTGTAG

mRNA sequence

ATGGTTGAAGTTGAAAATGAATCAGGTAAAACAATAAAGACATTTCGATCAGATCGAGGTGAAGAGTATATGGACTTACGATTCCAAGACTATTTGATAGAACATGGAATCCAATCACAACTCTCTGCACCTAGTACGCCTCAGCAGAACGGTGTATCAGAAAGAAGAAACCTAACTTTGTTAGATATGGTTCGCTCTATGATGAGTTTTTCTCGGTTGTCAGATTCTTTTTGGGGATATGCTTTAGAAATAACTATCTATATTTTAAACAACGTTCCCTCTAAAAGTATTTTTGAAACACTTTATGAGCTATGGAAAGGGCGTAAAGGTAGTTTATGTCACTTCAGGATTTGGGGATGTCCAGCACACGTGTTGGTGCAAAACCTTAAAAAGTTAGAACGTCGTTCAAAATTATCATATTTGTAG

Coding sequence (CDS)

ATGGTTGAAGTTGAAAATGAATCAGGTAAAACAATAAAGACATTTCGATCAGATCGAGGTGAAGAGTATATGGACTTACGATTCCAAGACTATTTGATAGAACATGGAATCCAATCACAACTCTCTGCACCTAGTACGCCTCAGCAGAACGGTGTATCAGAAAGAAGAAACCTAACTTTGTTAGATATGGTTCGCTCTATGATGAGTTTTTCTCGGTTGTCAGATTCTTTTTGGGGATATGCTTTAGAAATAACTATCTATATTTTAAACAACGTTCCCTCTAAAAGTATTTTTGAAACACTTTATGAGCTATGGAAAGGGCGTAAAGGTAGTTTATGTCACTTCAGGATTTGGGGATGTCCAGCACACGTGTTGGTGCAAAACCTTAAAAAGTTAGAACGTCGTTCAAAATTATCATATTTGTAG

Protein sequence

MVEVENESGKTIKTFRSDRGEEYMDLRFQDYLIEHGIQSQLSAPSTPQQNGVSERRNLTLLDMVRSMMSFSRLSDSFWGYALEITIYILNNVPSKSIFETLYELWKGRKGSLCHFRIWGCPAHVLVQNLKKLERRSKLSYL

Homology

[Close]

BLAST of Cmc08g0223531 vs. NCBI nr
Match: TYK30724.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 240.7 bits (613), Expect = 7.5e-60
Identity = 118/136 (86.76%), Postives = 123/136 (90.44%), Query Frame = 0


Query: 3   EVENESGKTIKTFRSDRGEEYMDLRFQDYLIEHGIQSQLSAPSTPQQNGVSERRNLTLLD 62
           EVENESGKTIKT RSDRGEEYMDLRFQDYLIEH IQSQLSAP+TPQQNGVSERRN  LLD
Sbjct: 44  EVENESGKTIKTLRSDRGEEYMDLRFQDYLIEHRIQSQLSAPNTPQQNGVSERRNRALLD 103

Query: 63  MVRSMMSFSRLSDSFWGYALEITIYILNNVPSKSIFETLYELWKGRKGSLCHFRIWGCPA 122
           MVRSM SF++L DSFWGYALE TIYILNNVPSKS+ ET YELWKGRKGSL HFRIWGCP+
Sbjct: 104 MVRSMTSFAQLPDSFWGYALETTIYILNNVPSKSVSETPYELWKGRKGSLRHFRIWGCPS 163

Query: 123 HVLVQNLKKLERRSKL 139
           HVLVQN  KLE RSKL
Sbjct: 164 HVLVQNPNKLEHRSKL 179

[Close]

BLAST of Cmc08g0223531 vs. NCBI nr
Match: KAA0037569.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK03103.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 235.3 bits (599), Expect = 3.1e-58
Identity = 118/136 (86.76%), Postives = 122/136 (89.71%), Query Frame = 0


Query: 3   EVENESGKTIKTFRSDRGEEYMDLRFQDYLIEHGIQSQLSAPSTPQQNGVSERRNLTLLD 62
           EVENESGKTIKTFRSDRG EYMDLRFQDYLI+HGIQSQLSAPSTPQQNGVSERRN TLLD
Sbjct: 71  EVENESGKTIKTFRSDRGGEYMDLRFQDYLIKHGIQSQLSAPSTPQQNGVSERRNQTLLD 130

Query: 63  MVRSMMSFSRLSDSFWGYALEITIYILNNVPSKSIFETLYELWKGRKGSLCHFRIWGCPA 122
           MVRSMMSF++L DSF GYALE TIYILNNVP KS+ ET YELWK RK SL HFRIWGCPA
Sbjct: 131 MVRSMMSFAQLPDSFRGYALETTIYILNNVPFKSVSETHYELWKDRKSSLRHFRIWGCPA 190

Query: 123 HVLVQNLKKLERRSKL 139
           HVLVQN K LERR KL
Sbjct: 191 HVLVQNPKNLERRLKL 206

[Close]

BLAST of Cmc08g0223531 vs. NCBI nr
Match: ADJ18449.1 (gag/pol protein, partial [Bryonia dioica])

HSP 1 Score: 230.7 bits (587), Expect = 7.7e-57
Identity = 114/136 (83.82%), Postives = 121/136 (88.97%), Query Frame = 0


Query: 3   EVENESGKTIKTFRSDRGEEYMDLRFQDYLIEHGIQSQLSAPSTPQQNGVSERRNLTLLD 62
           EVENE GKTIKT RSDRG EYMD +FQDYLIE GIQSQLSAPSTPQQNGVSERRN TLLD
Sbjct: 555 EVENEIGKTIKTLRSDRGGEYMDSKFQDYLIEFGIQSQLSAPSTPQQNGVSERRNRTLLD 614

Query: 63  MVRSMMSFSRLSDSFWGYALEITIYILNNVPSKSIFETLYELWKGRKGSLCHFRIWGCPA 122
           MVRSMMS+++L DSFWGYALE  I+ILNNVPSKS+ ET YELWKGRK SL +FRIWGCPA
Sbjct: 615 MVRSMMSYAQLPDSFWGYALETAIHILNNVPSKSVLETPYELWKGRKSSLRYFRIWGCPA 674

Query: 123 HVLVQNLKKLERRSKL 139
           HVLVQN KKLE RSKL
Sbjct: 675 HVLVQNPKKLEPRSKL 690

[Close]

BLAST of Cmc08g0223531 vs. NCBI nr
Match: KAA0063836.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK28216.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 219.5 bits (558), Expect = 1.8e-53
Identity = 106/136 (77.94%), Postives = 118/136 (86.76%), Query Frame = 0


Query: 3   EVENESGKTIKTFRSDRGEEYMDLRFQDYLIEHGIQSQLSAPSTPQQNGVSERRNLTLLD 62
           EVEN   K IK  RS+RGEEYMDLRFQDY+IEHGIQSQLSAP TPQQNGVSERRN TLLD
Sbjct: 71  EVENLLSKKIKILRSNRGEEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLD 130

Query: 63  MVRSMMSFSRLSDSFWGYALEITIYILNNVPSKSIFETLYELWKGRKGSLCHFRIWGCPA 122
           MVRSMMS+++L  SFWGYA+E T++ILNNVPSKS+ ET +ELW+GRK SL HFRIWGCPA
Sbjct: 131 MVRSMMSYAQLPSSFWGYAVETTVHILNNVPSKSVSETPFELWRGRKPSLSHFRIWGCPA 190

Query: 123 HVLVQNLKKLERRSKL 139
           HVLV N KKLE RS+L
Sbjct: 191 HVLVTNPKKLEPRSRL 206

[Close]

BLAST of Cmc08g0223531 vs. NCBI nr
Match: KAA0025945.1 (gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0035786.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0040492.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0041262.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 216.9 bits (551), Expect = 1.2e-52
Identity = 105/136 (77.21%), Postives = 116/136 (85.29%), Query Frame = 0


Query: 3   EVENESGKTIKTFRSDRGEEYMDLRFQDYLIEHGIQSQLSAPSTPQQNGVSERRNLTLLD 62
           EVEN   K IK  RSDRG EYMDLRFQDY+IEHGIQSQLSAP TPQQNGVSERRN TLLD
Sbjct: 461 EVENLLSKKIKILRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLD 520

Query: 63  MVRSMMSFSRLSDSFWGYALEITIYILNNVPSKSIFETLYELWKGRKGSLCHFRIWGCPA 122
           MVRSMMS+++L  SFWGYA+E  ++ILNNVPSKS+ ET +ELW+GRK SL HFRIWGCPA
Sbjct: 521 MVRSMMSYAQLPSSFWGYAVETAVHILNNVPSKSVSETPFELWRGRKPSLSHFRIWGCPA 580

Query: 123 HVLVQNLKKLERRSKL 139
           HVLV N KKLE RS+L
Sbjct: 581 HVLVTNPKKLEPRSRL 596

[Close]

BLAST of Cmc08g0223531 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 5.2e-24
Identity = 54/136 (39.71%), Postives = 83/136 (61.03%), Query Frame = 0


Query: 4   VENESGKTIKTFRSDRGEEYMDLRFQDYLIEHGIQSQLSAPSTPQQNGVSERRNLTLLDM 63
           VE E+G+ +K  RSD G EY    F++Y   HGI+ + + P TPQ NGV+ER N T+++ 
Sbjct: 536 VERETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQHNGVAERMNRTIVEK 595

Query: 64  VRSMMSFSRLSDSFWGYALEITIYILNNVPSKSI-FETLYELWKGRKGSLCHFRIWGCP- 123
           VRSM+  ++L  SFWG A++   Y++N  PS  + FE    +W  ++ S  H +++GC  
Sbjct: 596 VRSMLRMAKLPKSFWGEAVQTACYLINRSPSVPLAFEIPERVWTNKEVSYSHLKVFGCRA 655

Query: 124 -AHVLVQNLKKLERRS 137
            AHV  +   KL+ +S
Sbjct: 656 FAHVPKEQRTKLDDKS 671

[Close]

BLAST of Cmc08g0223531 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 92.8 bits (229), Expect = 3.3e-18
Identity = 42/114 (36.84%), Postives = 69/114 (60.53%), Query Frame = 0


Query: 18  DRGEEYMDLRFQDYLIEHGIQSQLSAPSTPQQNGVSERRNLTLLDMVRSMMSFSRLSDSF 77
           D G EY+    + + ++ GI   L+ P TPQ NGVSER   T+ +  R+M+S ++L  SF
Sbjct: 550 DNGREYLSNEMRQFCVKKGISYHLTVPHTPQLNGVSERMIRTITEKARTMVSGAKLDKSF 609

Query: 78  WGYALEITIYILNNVPSKSIFE---TLYELWKGRKGSLCHFRIWGCPAHVLVQN 129
           WG A+    Y++N +PS+++ +   T YE+W  +K  L H R++G   +V ++N
Sbjct: 610 WGEAVLTATYLINRIPSRALVDSSKTPYEMWHNKKPYLKHLRVFGATVYVHIKN 663

[Close]

BLAST of Cmc08g0223531 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.3e-14
Identity = 43/137 (31.39%), Postives = 80/137 (58.39%), Query Frame = 0


Query: 4   VENESGKTIKTFRSDRGEEYMDLRFQDYLIEHGIQSQLSAPSTPQQNGVSERRNLTLLDM 63
           VEN     I T  SD G E++ LR  DYL +HGI    S P TP+ NG+SER++  +++M
Sbjct: 557 VENRFQTRIGTLYSDNGGEFVVLR--DYLSQHGISHFTSPPHTPEHNGLSERKHRHIVEM 616

Query: 64  VRSMMSFSRLSDSFWGYALEITIYILNNVPSKSI-FETLYELWKGRKGSLCHFRIWGCPA 123
             +++S + +  ++W YA  + +Y++N +P+  +  ++ ++   G+  +    +++GC  
Sbjct: 617 GLTLLSHASVPKTYWPYAFSVAVYLINRLPTPLLQLQSPFQKLFGQPPNYEKLKVFGCAC 676

Query: 124 HVLVQ--NLKKLERRSK 138
           +  ++  N  KLE +SK
Sbjct: 677 YPWLRPYNRHKLEDKSK 691

[Close]

BLAST of Cmc08g0223531 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.2e-12
Identity = 39/137 (28.47%), Postives = 77/137 (56.20%), Query Frame = 0


Query: 4   VENESGKTIKTFRSDRGEEYMDLRFQDYLIEHGIQSQLSAPSTPQQNGVSERRNLTLLDM 63
           +EN     I TF SD G E++ L   +Y  +HGI    S P TP+ NG+SER++  +++ 
Sbjct: 578 LENRFQTRIGTFYSDNGGEFVAL--WEYFSQHGISHLTSPPHTPEHNGLSERKHRHIVET 637

Query: 64  VRSMMSFSRLSDSFWGYALEITIYILNNVPSKSI-FETLYELWKGRKGSLCHFRIWGCPA 123
             +++S + +  ++W YA  + +Y++N +P+  +  E+ ++   G   +    R++GC  
Sbjct: 638 GLTLLSHASIPKTYWPYAFAVAVYLINRLPTPLLQLESPFQKLFGTSPNYDKLRVFGCAC 697

Query: 124 HVLVQ--NLKKLERRSK 138
           +  ++  N  KL+ +S+
Sbjct: 698 YPWLRPYNQHKLDDKSR 712

[Close]

BLAST of Cmc08g0223531 vs. ExPASy Swiss-Prot
Match: Q12491 (Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY2B-B PE=3 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 1.2e-04
Identity = 25/91 (27.47%), Postives = 47/91 (51.65%), Query Frame = 0


Query: 4   VENESGKTIKTFRSDRGEEYMDLRFQDYLIEHGIQSQLSAPSTPQQNGVSERRNLTLLDM 63
           ++N+    +   + DRG EY +     +    GI +  +  +  + +GV+ER N TLL+ 
Sbjct: 718 IKNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGITACYTTTADSRAHGVAERLNRTLLND 777

Query: 64  VRSMMSFSRLSDSFWGYALEITIYILNNVPS 95
            R+++  S L +  W  A+E +  I N++ S
Sbjct: 778 CRTLLHCSGLPNHLWFSAVEFSTIIRNSLVS 808

[Close]

BLAST of Cmc08g0223531 vs. ExPASy TrEMBL
Match: A0A5D3E496 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold343G00560 PE=4 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 3.6e-60
Identity = 118/136 (86.76%), Postives = 123/136 (90.44%), Query Frame = 0


Query: 3   EVENESGKTIKTFRSDRGEEYMDLRFQDYLIEHGIQSQLSAPSTPQQNGVSERRNLTLLD 62
           EVENESGKTIKT RSDRGEEYMDLRFQDYLIEH IQSQLSAP+TPQQNGVSERRN  LLD
Sbjct: 44  EVENESGKTIKTLRSDRGEEYMDLRFQDYLIEHRIQSQLSAPNTPQQNGVSERRNRALLD 103

Query: 63  MVRSMMSFSRLSDSFWGYALEITIYILNNVPSKSIFETLYELWKGRKGSLCHFRIWGCPA 122
           MVRSM SF++L DSFWGYALE TIYILNNVPSKS+ ET YELWKGRKGSL HFRIWGCP+
Sbjct: 104 MVRSMTSFAQLPDSFWGYALETTIYILNNVPSKSVSETPYELWKGRKGSLRHFRIWGCPS 163

Query: 123 HVLVQNLKKLERRSKL 139
           HVLVQN  KLE RSKL
Sbjct: 164 HVLVQNPNKLEHRSKL 179

[Close]

BLAST of Cmc08g0223531 vs. ExPASy TrEMBL
Match: A0A5A7T8E8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold374G00320 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 1.5e-58
Identity = 118/136 (86.76%), Postives = 122/136 (89.71%), Query Frame = 0


Query: 3   EVENESGKTIKTFRSDRGEEYMDLRFQDYLIEHGIQSQLSAPSTPQQNGVSERRNLTLLD 62
           EVENESGKTIKTFRSDRG EYMDLRFQDYLI+HGIQSQLSAPSTPQQNGVSERRN TLLD
Sbjct: 71  EVENESGKTIKTFRSDRGGEYMDLRFQDYLIKHGIQSQLSAPSTPQQNGVSERRNQTLLD 130

Query: 63  MVRSMMSFSRLSDSFWGYALEITIYILNNVPSKSIFETLYELWKGRKGSLCHFRIWGCPA 122
           MVRSMMSF++L DSF GYALE TIYILNNVP KS+ ET YELWK RK SL HFRIWGCPA
Sbjct: 131 MVRSMMSFAQLPDSFRGYALETTIYILNNVPFKSVSETHYELWKDRKSSLRHFRIWGCPA 190

Query: 123 HVLVQNLKKLERRSKL 139
           HVLVQN K LERR KL
Sbjct: 191 HVLVQNPKNLERRLKL 206

[Close]

BLAST of Cmc08g0223531 vs. ExPASy TrEMBL
Match: E2GK51 (Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 3.7e-57
Identity = 114/136 (83.82%), Postives = 121/136 (88.97%), Query Frame = 0


Query: 3   EVENESGKTIKTFRSDRGEEYMDLRFQDYLIEHGIQSQLSAPSTPQQNGVSERRNLTLLD 62
           EVENE GKTIKT RSDRG EYMD +FQDYLIE GIQSQLSAPSTPQQNGVSERRN TLLD
Sbjct: 555 EVENEIGKTIKTLRSDRGGEYMDSKFQDYLIEFGIQSQLSAPSTPQQNGVSERRNRTLLD 614

Query: 63  MVRSMMSFSRLSDSFWGYALEITIYILNNVPSKSIFETLYELWKGRKGSLCHFRIWGCPA 122
           MVRSMMS+++L DSFWGYALE  I+ILNNVPSKS+ ET YELWKGRK SL +FRIWGCPA
Sbjct: 615 MVRSMMSYAQLPDSFWGYALETAIHILNNVPSKSVLETPYELWKGRKSSLRYFRIWGCPA 674

Query: 123 HVLVQNLKKLERRSKL 139
           HVLVQN KKLE RSKL
Sbjct: 675 HVLVQNPKKLEPRSKL 690

[Close]

BLAST of Cmc08g0223531 vs. ExPASy TrEMBL
Match: A0A5A7VBN3 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold258G00300 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 8.6e-54
Identity = 106/136 (77.94%), Postives = 118/136 (86.76%), Query Frame = 0


Query: 3   EVENESGKTIKTFRSDRGEEYMDLRFQDYLIEHGIQSQLSAPSTPQQNGVSERRNLTLLD 62
           EVEN   K IK  RS+RGEEYMDLRFQDY+IEHGIQSQLSAP TPQQNGVSERRN TLLD
Sbjct: 71  EVENLLSKKIKILRSNRGEEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLD 130

Query: 63  MVRSMMSFSRLSDSFWGYALEITIYILNNVPSKSIFETLYELWKGRKGSLCHFRIWGCPA 122
           MVRSMMS+++L  SFWGYA+E T++ILNNVPSKS+ ET +ELW+GRK SL HFRIWGCPA
Sbjct: 131 MVRSMMSYAQLPSSFWGYAVETTVHILNNVPSKSVSETPFELWRGRKPSLSHFRIWGCPA 190

Query: 123 HVLVQNLKKLERRSKL 139
           HVLV N KKLE RS+L
Sbjct: 191 HVLVTNPKKLEPRSRL 206

[Close]

BLAST of Cmc08g0223531 vs. ExPASy TrEMBL
Match: A0A5A7TZD0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00090 PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 5.6e-53
Identity = 105/136 (77.21%), Postives = 116/136 (85.29%), Query Frame = 0


Query: 3   EVENESGKTIKTFRSDRGEEYMDLRFQDYLIEHGIQSQLSAPSTPQQNGVSERRNLTLLD 62
           EVEN   K IK  RSDRG EYMDLRFQDY+IEHGIQSQLSAP TPQQNGVSERRN TLLD
Sbjct: 461 EVENLLSKKIKILRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLD 520

Query: 63  MVRSMMSFSRLSDSFWGYALEITIYILNNVPSKSIFETLYELWKGRKGSLCHFRIWGCPA 122
           MVRSMMS+++L  SFWGYA+E  ++ILNNVPSKS+ ET +ELW+GRK SL HFRIWGCPA
Sbjct: 521 MVRSMMSYAQLPSSFWGYAVETAVHILNNVPSKSVSETPFELWRGRKPSLSHFRIWGCPA 580

Query: 123 HVLVQNLKKLERRSKL 139
           HVLV N KKLE RS+L
Sbjct: 581 HVLVTNPKKLEPRSRL 596

The following BLAST results are available for this feature:

BLAST of Cmc08g0223531 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK30724.1	7.5e-60	86.76	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0037569.1	3.1e-58	86.76	gag/pol protein [Cucumis melo var. makuwa] >TYK03103.1 gag/pol protein [Cucumis ...	[more]
ADJ18449.1	7.7e-57	83.82	gag/pol protein, partial [Bryonia dioica]	[more]
KAA0063836.1	1.8e-53	77.94	gag/pol protein [Cucumis melo var. makuwa] >TYK28216.1 gag/pol protein [Cucumis ...	[more]
KAA0025945.1	1.2e-52	77.21	gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumi...	[more]

BLAST of Cmc08g0223531 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	5.2e-24	39.71	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	3.3e-18	36.84	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	1.3e-14	31.39	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	1.2e-12	28.47	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q12491	1.2e-04	27.47	Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of Cmc08g0223531 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E496	3.6e-60	86.76	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold343G0056...	[more]
A0A5A7T8E8	1.5e-58	86.76	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold374G0032...	[more]
E2GK51	3.7e-57	83.82	Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1	[more]
A0A5A7VBN3	8.6e-54	77.94	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold258G0030...	[more]
A0A5A7TZD0	5.6e-53	77.21	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G000...	[more]

BLAST of Cmc08g0223531 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 4..134 e-value: 3.3E-22 score: 80.7
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 1..129 score: 15.533107
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 3..117

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0223531.1	Cmc08g0223531.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding