Cmc08g0223521 (gene) Melon (Charmono) v1.1

Overview
NameCmc08g0223521
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionGag/pol protein
LocationCMiso1.1chr08: 13055385 .. 13055747 (-)
RNA-Seq ExpressionCmc08g0223521
SyntenyCmc08g0223521
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGATTTGGAAAATGCACAATATGTTCTTGGTATCCAAATAGTTCGGAACCGTAAGAACAAAACACTAGTCATGTCTCAAACATCTCATATAGACAAAATGTTATCAAGATATAAGATGCAGAATTCCAAAAAGGGTATGCTGTCGTACAGATATGGAATTCATTTATCAAAAGAACAATGTCCAAAGACACCTCAAGAAGTTGAGGATATGAGTAACATTCCCTATGCTTCTGCTATTGGAAGCTTGATGTACGCAATGTTATGTACTAGACCTGACATTTTCTATTCAGTAGGGATAGTTAGTAGATATCAGTCCAATCCTGACATGATCATTGAACAGCTGTTAAGAATATTCTAA

mRNA sequence

ATGAAAGATTTGGAAAATGCACAATATGTTCTTGGTATCCAAATAGTTCGGAACCGTAAGAACAAAACACTAGTCATGTCTCAAACATCTCATATAGACAAAATGTTATCAAGATATAAGATGCAGAATTCCAAAAAGGGTATGCTGTCGTACAGATATGGAATTCATTTATCAAAAGAACAATGTCCAAAGACACCTCAAGAAGTTGAGGATATGAGTAACATTCCCTATGCTTCTGCTATTGGAAGCTTGATGTACGCAATGTTATGTACTAGACCTGACATTTTCTATTCAGTAGGGATAGTTAGTAGATATCAGTCCAATCCTGACATGATCATTGAACAGCTGTTAAGAATATTCTAA

Coding sequence (CDS)

ATGAAAGATTTGGAAAATGCACAATATGTTCTTGGTATCCAAATAGTTCGGAACCGTAAGAACAAAACACTAGTCATGTCTCAAACATCTCATATAGACAAAATGTTATCAAGATATAAGATGCAGAATTCCAAAAAGGGTATGCTGTCGTACAGATATGGAATTCATTTATCAAAAGAACAATGTCCAAAGACACCTCAAGAAGTTGAGGATATGAGTAACATTCCCTATGCTTCTGCTATTGGAAGCTTGATGTACGCAATGTTATGTACTAGACCTGACATTTTCTATTCAGTAGGGATAGTTAGTAGATATCAGTCCAATCCTGACATGATCATTGAACAGCTGTTAAGAATATTCTAA

Protein sequence

MKDLENAQYVLGIQIVRNRKNKTLVMSQTSHIDKMLSRYKMQNSKKGMLSYRYGIHLSKEQCPKTPQEVEDMSNIPYASAIGSLMYAMLCTRPDIFYSVGIVSRYQSNPDMIIEQLLRIF
Homology
[Close]
BLAST of Cmc08g0223521 vs. NCBI nr
Match: KAA0025787.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 232.6 bits (592), Expect = 1.7e-57
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0 

Query: 1   MKDLENAQYVLGIQIVRNRKNKTLVMSQTSHIDKMLSRYKMQNSKKGMLSYRYGIHLSKE 60
           MKDLENAQYVLGIQIVRNRKNKTLVMSQTSHIDKMLSRYKMQNSKKGMLSYRYGIHLSKE
Sbjct: 437 MKDLENAQYVLGIQIVRNRKNKTLVMSQTSHIDKMLSRYKMQNSKKGMLSYRYGIHLSKE 496

Query: 61  QCPKTPQEVEDMSNIPYASAIGSLMYAMLCTRPDIFYSVGIVSRYQSNPDMIIEQL 117
           QCPKTPQEVEDMSNIPYASAIGSLMYAMLCTRPDIFYSVGIVSRYQSNPDMIIEQL
Sbjct: 497 QCPKTPQEVEDMSNIPYASAIGSLMYAMLCTRPDIFYSVGIVSRYQSNPDMIIEQL 552

[Close]
BLAST of Cmc08g0223521 vs. NCBI nr
Match: TYK09668.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 232.6 bits (592), Expect = 1.7e-57
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0 

Query: 1   MKDLENAQYVLGIQIVRNRKNKTLVMSQTSHIDKMLSRYKMQNSKKGMLSYRYGIHLSKE 60
           MKDLENAQYVLGIQIVRNRKNKTLVMSQTSHIDKMLSRYKMQNSKKGMLSYRYGIHLSKE
Sbjct: 413 MKDLENAQYVLGIQIVRNRKNKTLVMSQTSHIDKMLSRYKMQNSKKGMLSYRYGIHLSKE 472

Query: 61  QCPKTPQEVEDMSNIPYASAIGSLMYAMLCTRPDIFYSVGIVSRYQSNPDMIIEQL 117
           QCPKTPQEVEDMSNIPYASAIGSLMYAMLCTRPDIFYSVGIVSRYQSNPDMIIEQL
Sbjct: 473 QCPKTPQEVEDMSNIPYASAIGSLMYAMLCTRPDIFYSVGIVSRYQSNPDMIIEQL 528

[Close]
BLAST of Cmc08g0223521 vs. NCBI nr
Match: TYK29680.1 (putative polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 204.5 bits (519), Expect = 5.0e-49
Identity = 104/120 (86.67%), Postives = 111/120 (92.50%), Query Frame = 0 

Query: 1   MKDLENAQYVLGIQIVRNRKNKTLVMSQTSHIDKMLSRYKMQNSKKGMLSYRYGIHLSKE 60
           MK L NAQYVLGIQIVRN+KNKTL MSQTS+IDKMLSRYKMQNSKKG+L YRYGIHLSKE
Sbjct: 471 MKYLGNAQYVLGIQIVRNQKNKTLAMSQTSYIDKMLSRYKMQNSKKGLLPYRYGIHLSKE 530

Query: 61  QCPKTPQEVEDMSNIPYASAIGSLMYAMLCTRPDIFYSVGIVSRYQSNPDMIIEQLLRIF 120
           QCPKTPQEVEDMSNIPYASA+GSLMYAMLCTRP+I YSVGIVSRYQS  D+II Q L+IF
Sbjct: 531 QCPKTPQEVEDMSNIPYASAVGSLMYAMLCTRPEICYSVGIVSRYQSILDVIIGQPLKIF 590

[Close]
BLAST of Cmc08g0223521 vs. NCBI nr
Match: KAA0052272.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 204.5 bits (519), Expect = 5.0e-49
Identity = 100/109 (91.74%), Postives = 105/109 (96.33%), Query Frame = 0 

Query: 1   MKDLENAQYVLGIQIVRNRKNKTLVMSQTSHIDKMLSRYKMQNSKKGMLSYRYGIHLSKE 60
           MKDLENAQYVLGI+IVRNRKNKTL MSQTS+IDKMLSRYKMQNSKK +L YRYGIHLSKE
Sbjct: 331 MKDLENAQYVLGIEIVRNRKNKTLAMSQTSYIDKMLSRYKMQNSKKSLLPYRYGIHLSKE 390

Query: 61  QCPKTPQEVEDMSNIPYASAIGSLMYAMLCTRPDIFYSVGIVSRYQSNP 110
           QCPKTPQEV+DMSNIPYASA+GSLMYAMLCTRPDI YSVGIVSRYQSNP
Sbjct: 391 QCPKTPQEVKDMSNIPYASAVGSLMYAMLCTRPDICYSVGIVSRYQSNP 439

[Close]
BLAST of Cmc08g0223521 vs. NCBI nr
Match: TYK11050.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 199.9 bits (507), Expect = 1.2e-47
Identity = 100/109 (91.74%), Postives = 103/109 (94.50%), Query Frame = 0 

Query: 1   MKDLENAQYVLGIQIVRNRKNKTLVMSQTSHIDKMLSRYKMQNSKKGMLSYRYGIHLSKE 60
           MKDL NAQYVLGIQIVRN KNKTL MSQTS+IDKMLSRYKMQNSKKG+L YRYGIHLSKE
Sbjct: 97  MKDLGNAQYVLGIQIVRNGKNKTLAMSQTSYIDKMLSRYKMQNSKKGLLPYRYGIHLSKE 156

Query: 61  QCPKTPQEVEDMSNIPYASAIGSLMYAMLCTRPDIFYSVGIVSRYQSNP 110
           QCPKTPQEVEDMSNIPYASAIGSLMYAMLCTR DI YSVGIV+RYQSNP
Sbjct: 157 QCPKTPQEVEDMSNIPYASAIGSLMYAMLCTRVDICYSVGIVNRYQSNP 205

[Close]
BLAST of Cmc08g0223521 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 7.6e-24
Identity = 53/109 (48.62%), Postives = 79/109 (72.48%), Query Frame = 0 

Query: 1    MKDLENAQYVLGIQIVRNRKNKTLVMSQTSHIDKMLSRYKMQNSKKGMLSYRYGIHLSKE 60
            MKDL  AQ +LG++IVR R ++ L +SQ  +I+++L R+ M+N+K         + LSK+
Sbjct: 1035 MKDLGPAQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKK 1094

Query: 61   QCPKTPQEVEDMSNIPYASAIGSLMYAMLCTRPDIFYSVGIVSRYQSNP 110
             CP T +E  +M+ +PY+SA+GSLMYAM+CTRPDI ++VG+VSR+  NP
Sbjct: 1095 MCPTTVEEKGNMAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENP 1143

[Close]
BLAST of Cmc08g0223521 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 60.1 bits (144), Expect = 2.0e-08
Identity = 41/122 (33.61%), Postives = 63/122 (51.64%), Query Frame = 0 

Query: 1    MKDLENAQYVLGIQIVRNRKNKTLVMSQTSHIDKMLSRYKMQN----SKKGMLSYRYGIH 60
            M DL   ++ +GI+I    +   + +SQ++++ K+LS++ M+N    S        Y + 
Sbjct: 1114 MTDLNEIKHFIGIRI--EMQEDKIYLSQSAYVKKILSKFNMENCNAVSTPLPSKINYELL 1173

Query: 61   LSKEQCPKTPQEVEDMSNIPYASAIGSLMYAMLCTRPDIFYSVGIVSRYQSNPDMIIEQL 119
             S E C           N P  S IG LMY MLCTRPD+  +V I+SRY S  +  + Q 
Sbjct: 1174 NSDEDC-----------NTPCRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQN 1222

[Close]
BLAST of Cmc08g0223521 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 1.2e-05
Identity = 19/38 (50.00%), Postives = 31/38 (81.58%), Query Frame = 0 

Query: 72  MSNIPYASAIGSLMYAMLCTRPDIFYSVGIVSRYQSNP 110
           M N+PY SA+G++MY M+ TRPD+  +VG++S++ S+P
Sbjct: 1   MKNVPYLSAVGAIMYLMVVTRPDLAAAVGVLSQFASDP 38

[Close]
BLAST of Cmc08g0223521 vs. ExPASy TrEMBL
Match: A0A5A7SM50 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G00360 PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 8.4e-58
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0 

Query: 1   MKDLENAQYVLGIQIVRNRKNKTLVMSQTSHIDKMLSRYKMQNSKKGMLSYRYGIHLSKE 60
           MKDLENAQYVLGIQIVRNRKNKTLVMSQTSHIDKMLSRYKMQNSKKGMLSYRYGIHLSKE
Sbjct: 437 MKDLENAQYVLGIQIVRNRKNKTLVMSQTSHIDKMLSRYKMQNSKKGMLSYRYGIHLSKE 496

Query: 61  QCPKTPQEVEDMSNIPYASAIGSLMYAMLCTRPDIFYSVGIVSRYQSNPDMIIEQL 117
           QCPKTPQEVEDMSNIPYASAIGSLMYAMLCTRPDIFYSVGIVSRYQSNPDMIIEQL
Sbjct: 497 QCPKTPQEVEDMSNIPYASAIGSLMYAMLCTRPDIFYSVGIVSRYQSNPDMIIEQL 552

[Close]
BLAST of Cmc08g0223521 vs. ExPASy TrEMBL
Match: A0A5D3CEL8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold447G00700 PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 8.4e-58
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0 

Query: 1   MKDLENAQYVLGIQIVRNRKNKTLVMSQTSHIDKMLSRYKMQNSKKGMLSYRYGIHLSKE 60
           MKDLENAQYVLGIQIVRNRKNKTLVMSQTSHIDKMLSRYKMQNSKKGMLSYRYGIHLSKE
Sbjct: 413 MKDLENAQYVLGIQIVRNRKNKTLVMSQTSHIDKMLSRYKMQNSKKGMLSYRYGIHLSKE 472

Query: 61  QCPKTPQEVEDMSNIPYASAIGSLMYAMLCTRPDIFYSVGIVSRYQSNPDMIIEQL 117
           QCPKTPQEVEDMSNIPYASAIGSLMYAMLCTRPDIFYSVGIVSRYQSNPDMIIEQL
Sbjct: 473 QCPKTPQEVEDMSNIPYASAIGSLMYAMLCTRPDIFYSVGIVSRYQSNPDMIIEQL 528

[Close]
BLAST of Cmc08g0223521 vs. ExPASy TrEMBL
Match: A0A5A7U945 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold207G001000 PE=3 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 2.4e-49
Identity = 100/109 (91.74%), Postives = 105/109 (96.33%), Query Frame = 0 

Query: 1   MKDLENAQYVLGIQIVRNRKNKTLVMSQTSHIDKMLSRYKMQNSKKGMLSYRYGIHLSKE 60
           MKDLENAQYVLGI+IVRNRKNKTL MSQTS+IDKMLSRYKMQNSKK +L YRYGIHLSKE
Sbjct: 331 MKDLENAQYVLGIEIVRNRKNKTLAMSQTSYIDKMLSRYKMQNSKKSLLPYRYGIHLSKE 390

Query: 61  QCPKTPQEVEDMSNIPYASAIGSLMYAMLCTRPDIFYSVGIVSRYQSNP 110
           QCPKTPQEV+DMSNIPYASA+GSLMYAMLCTRPDI YSVGIVSRYQSNP
Sbjct: 391 QCPKTPQEVKDMSNIPYASAVGSLMYAMLCTRPDICYSVGIVSRYQSNP 439

[Close]
BLAST of Cmc08g0223521 vs. ExPASy TrEMBL
Match: A0A5D3E2A3 (Putative polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold64G00300 PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 2.4e-49
Identity = 104/120 (86.67%), Postives = 111/120 (92.50%), Query Frame = 0 

Query: 1   MKDLENAQYVLGIQIVRNRKNKTLVMSQTSHIDKMLSRYKMQNSKKGMLSYRYGIHLSKE 60
           MK L NAQYVLGIQIVRN+KNKTL MSQTS+IDKMLSRYKMQNSKKG+L YRYGIHLSKE
Sbjct: 471 MKYLGNAQYVLGIQIVRNQKNKTLAMSQTSYIDKMLSRYKMQNSKKGLLPYRYGIHLSKE 530

Query: 61  QCPKTPQEVEDMSNIPYASAIGSLMYAMLCTRPDIFYSVGIVSRYQSNPDMIIEQLLRIF 120
           QCPKTPQEVEDMSNIPYASA+GSLMYAMLCTRP+I YSVGIVSRYQS  D+II Q L+IF
Sbjct: 531 QCPKTPQEVEDMSNIPYASAVGSLMYAMLCTRPEICYSVGIVSRYQSILDVIIGQPLKIF 590

[Close]
BLAST of Cmc08g0223521 vs. ExPASy TrEMBL
Match: A0A5D3CI71 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold73G00330 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 6.0e-48
Identity = 100/109 (91.74%), Postives = 103/109 (94.50%), Query Frame = 0 

Query: 1   MKDLENAQYVLGIQIVRNRKNKTLVMSQTSHIDKMLSRYKMQNSKKGMLSYRYGIHLSKE 60
           MKDL NAQYVLGIQIVRN KNKTL MSQTS+IDKMLSRYKMQNSKKG+L YRYGIHLSKE
Sbjct: 97  MKDLGNAQYVLGIQIVRNGKNKTLAMSQTSYIDKMLSRYKMQNSKKGLLPYRYGIHLSKE 156

Query: 61  QCPKTPQEVEDMSNIPYASAIGSLMYAMLCTRPDIFYSVGIVSRYQSNP 110
           QCPKTPQEVEDMSNIPYASAIGSLMYAMLCTR DI YSVGIV+RYQSNP
Sbjct: 157 QCPKTPQEVEDMSNIPYASAIGSLMYAMLCTRVDICYSVGIVNRYQSNP 205

The following BLAST results are available for this feature:
BLAST of Cmc08g0223521 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0025787.11.7e-57100.00gag/pol protein [Cucumis melo var. makuwa][more]
TYK09668.11.7e-57100.00gag/pol protein [Cucumis melo var. makuwa][more]
TYK29680.15.0e-4986.67putative polyprotein [Cucumis melo var. makuwa][more]
KAA0052272.15.0e-4991.74gag/pol protein [Cucumis melo var. makuwa][more]
TYK11050.11.2e-4791.74gag/pol protein [Cucumis melo var. makuwa][more]
BLAST of Cmc08g0223521 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P109787.6e-2448.62Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
P041462.0e-0833.61Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3[more]
P0CV721.2e-0550.00Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P... [more]
BLAST of Cmc08g0223521 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7SM508.4e-58100.00Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G00360... [more]
A0A5D3CEL88.4e-58100.00Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold447G0070... [more]
A0A5A7U9452.4e-4991.74Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold207G0010... [more]
A0A5D3E2A32.4e-4986.67Putative polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold64G... [more]
A0A5D3CI716.0e-4891.74Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold73G00330... [more]
BLAST of Cmc08g0223521 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc08g0223521.1Cmc08g0223521.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0006508 proteolysis
molecular_function GO:0008234 cysteine-type peptidase activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding