Cmc08g0223431 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0223431
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr08: 12909561 .. 12910238 (+)
RNA-Seq Expression	Cmc08g0223431
Synteny	Cmc08g0223431

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTCTATATCGACAACTTTTTGGCAATCTCATCTATCTAACAGTGAATCGTCCAGACATTGCATATGTTGTTCATATTGTCAGTCAGTTTATGGCTGCTCCTAGAACCACTTATTTTACCACCGTGTTACGTATTCTTCGCTATATCAAGGGAACCTTGGGGCATGAACTTCAGTTTTCTTCTCAATCCTCCCTCGTGTTGTCTGGCTACTCTGATGCAGATTGGGCTAGGGACCCTACCGATCAATGTTCTACAACAGGTTACTGTTTCTATTTAAGAGATTCTCTCATTTCTTGGCGTAGTAAGAAACAAAGAGTTGTCTCTCGTTCTAGTACTGAATCAGAATATCGTGCTCTTGCTGATGCTAACGCTGAACTCCTATGGCTTCATTGGCTTCTTGCTGATATGGGGGTTCCCCAGCAGGGTCCCATCCTCCTTCATTGTGACAATCGTAGTGCCATCCAAATTGCCCACAATGATGTTTTCCATGAGCGTACAAAGCACATCGAAAATGACTGTCACTTCATTCGTCATCATCTCTTGAGCAACACACTTCTTCTGCGATCTGTCTCCACCACTGAGCAACCAGCAGATATCTTTACCAAAGCTTTACCATCTACCCGCTTCAATCAGTTACTTACCAAACTCAAGCTGACAGCTACTCTACCACCTTGA

mRNA sequence

ATGAGTCTATATCGACAACTTTTTGGCAATCTCATCTATCTAACAGTGAATCGTCCAGACATTGCATATGTTGTTCATATTGTCAGTCAGTTTATGGCTGCTCCTAGAACCACTTATTTTACCACCGTGTTACGTATTCTTCGCTATATCAAGGGAACCTTGGGGCATGAACTTCAGTTTTCTTCTCAATCCTCCCTCGTGTTGTCTGGCTACTCTGATGCAGATTGGGCTAGGGACCCTACCGATCAATGTTCTACAACAGGTTACTGTTTCTATTTAAGAGATTCTCTCATTTCTTGGCGTAGTAAGAAACAAAGAGTTGTCTCTCGTTCTAGTACTGAATCAGAATATCGTGCTCTTGCTGATGCTAACGCTGAACTCCTATGGCTTCATTGGCTTCTTGCTGATATGGGGGTTCCCCAGCAGGGTCCCATCCTCCTTCATTGTGACAATCGTAGTGCCATCCAAATTGCCCACAATGATGTTTTCCATGAGCGTACAAAGCACATCGAAAATGACTGTCACTTCATTCGTCATCATCTCTTGAGCAACACACTTCTTCTGCGATCTGTCTCCACCACTGAGCAACCAGCAGATATCTTTACCAAAGCTTTACCATCTACCCGCTTCAATCAGTTACTTACCAAACTCAAGCTGACAGCTACTCTACCACCTTGA

Coding sequence (CDS)

ATGAGTCTATATCGACAACTTTTTGGCAATCTCATCTATCTAACAGTGAATCGTCCAGACATTGCATATGTTGTTCATATTGTCAGTCAGTTTATGGCTGCTCCTAGAACCACTTATTTTACCACCGTGTTACGTATTCTTCGCTATATCAAGGGAACCTTGGGGCATGAACTTCAGTTTTCTTCTCAATCCTCCCTCGTGTTGTCTGGCTACTCTGATGCAGATTGGGCTAGGGACCCTACCGATCAATGTTCTACAACAGGTTACTGTTTCTATTTAAGAGATTCTCTCATTTCTTGGCGTAGTAAGAAACAAAGAGTTGTCTCTCGTTCTAGTACTGAATCAGAATATCGTGCTCTTGCTGATGCTAACGCTGAACTCCTATGGCTTCATTGGCTTCTTGCTGATATGGGGGTTCCCCAGCAGGGTCCCATCCTCCTTCATTGTGACAATCGTAGTGCCATCCAAATTGCCCACAATGATGTTTTCCATGAGCGTACAAAGCACATCGAAAATGACTGTCACTTCATTCGTCATCATCTCTTGAGCAACACACTTCTTCTGCGATCTGTCTCCACCACTGAGCAACCAGCAGATATCTTTACCAAAGCTTTACCATCTACCCGCTTCAATCAGTTACTTACCAAACTCAAGCTGACAGCTACTCTACCACCTTGA

Protein sequence

MSLYRQLFGNLIYLTVNRPDIAYVVHIVSQFMAAPRTTYFTTVLRILRYIKGTLGHELQFSSQSSLVLSGYSDADWARDPTDQCSTTGYCFYLRDSLISWRSKKQRVVSRSSTESEYRALADANAELLWLHWLLADMGVPQQGPILLHCDNRSAIQIAHNDVFHERTKHIENDCHFIRHHLLSNTLLLRSVSTTEQPADIFTKALPSTRFNQLLTKLKLTATLPP

Homology

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BLAST of Cmc08g0223431 vs. NCBI nr
Match: KAA0025815.1 (putative mitochondrial protein [Cucumis melo var. makuwa] >TYK09641.1 putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 453.4 bits (1165), Expect = 1.2e-123
Identity = 225/225 (100.00%), Postives = 225/225 (100.00%), Query Frame = 0


Query: 1   MSLYRQLFGNLIYLTVNRPDIAYVVHIVSQFMAAPRTTYFTTVLRILRYIKGTLGHELQF 60
           MSLYRQLFGNLIYLTVNRPDIAYVVHIVSQFMAAPRTTYFTTVLRILRYIKGTLGHELQF
Sbjct: 433 MSLYRQLFGNLIYLTVNRPDIAYVVHIVSQFMAAPRTTYFTTVLRILRYIKGTLGHELQF 492

Query: 61  SSQSSLVLSGYSDADWARDPTDQCSTTGYCFYLRDSLISWRSKKQRVVSRSSTESEYRAL 120
           SSQSSLVLSGYSDADWARDPTDQCSTTGYCFYLRDSLISWRSKKQRVVSRSSTESEYRAL
Sbjct: 493 SSQSSLVLSGYSDADWARDPTDQCSTTGYCFYLRDSLISWRSKKQRVVSRSSTESEYRAL 552

Query: 121 ADANAELLWLHWLLADMGVPQQGPILLHCDNRSAIQIAHNDVFHERTKHIENDCHFIRHH 180
           ADANAELLWLHWLLADMGVPQQGPILLHCDNRSAIQIAHNDVFHERTKHIENDCHFIRHH
Sbjct: 553 ADANAELLWLHWLLADMGVPQQGPILLHCDNRSAIQIAHNDVFHERTKHIENDCHFIRHH 612

Query: 181 LLSNTLLLRSVSTTEQPADIFTKALPSTRFNQLLTKLKLTATLPP 226
           LLSNTLLLRSVSTTEQPADIFTKALPSTRFNQLLTKLKLTATLPP
Sbjct: 613 LLSNTLLLRSVSTTEQPADIFTKALPSTRFNQLLTKLKLTATLPP 657

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BLAST of Cmc08g0223431 vs. NCBI nr
Match: KAA0037745.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 406.0 bits (1042), Expect = 2.1e-109
Identity = 202/225 (89.78%), Postives = 211/225 (93.78%), Query Frame = 0


Query: 1    MSLYRQLFGNLIYLTVNRPDIAYVVHIVSQFMAAPRTTYFTTVLRILRYIKGTLGHELQF 60
            +SLYRQL G+LIYLTV RPDIAY VHIVSQFMAAPRT +FT VLRILRY+KGTLGH LQF
Sbjct: 1110 VSLYRQLVGSLIYLTVTRPDIAYAVHIVSQFMAAPRTIHFTAVLRILRYVKGTLGHGLQF 1169

Query: 61   SSQSSLVLSGYSDADWARDPTDQCSTTGYCFYLRDSLISWRSKKQRVVSRSSTESEYRAL 120
            SSQSSLVLSGYSDADWA DPTD+ STTGYCFYL DSLISWRSKKQ VVSRSSTESEYRAL
Sbjct: 1170 SSQSSLVLSGYSDADWAGDPTDRRSTTGYCFYLGDSLISWRSKKQSVVSRSSTESEYRAL 1229

Query: 121  ADANAELLWLHWLLADMGVPQQGPILLHCDNRSAIQIAHNDVFHERTKHIENDCHFIRHH 180
            ADA AELLWL WLLADMGVPQQGP LLHCDNRSAIQIAHNDVFHERTKHIENDCHFIRHH
Sbjct: 1230 ADATAELLWLRWLLADMGVPQQGPTLLHCDNRSAIQIAHNDVFHERTKHIENDCHFIRHH 1289

Query: 181  LLSNTLLLRSVSTTEQPADIFTKALPSTRFNQLLTKLKLTATLPP 226
            LLS+TLLL+S+STTEQPADIFTKALPSTRFNQ+ TKLKLTATLPP
Sbjct: 1290 LLSHTLLLQSISTTEQPADIFTKALPSTRFNQIRTKLKLTATLPP 1334

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BLAST of Cmc08g0223431 vs. NCBI nr
Match: KAA0041601.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >KAA0065379.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK12000.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 406.0 bits (1042), Expect = 2.1e-109
Identity = 202/225 (89.78%), Postives = 211/225 (93.78%), Query Frame = 0


Query: 1    MSLYRQLFGNLIYLTVNRPDIAYVVHIVSQFMAAPRTTYFTTVLRILRYIKGTLGHELQF 60
            +SLYRQL G+LIYLTV RPDIAY VHIVSQFMAAPRT +FT VLRILRY+KGTLGH LQF
Sbjct: 1110 VSLYRQLVGSLIYLTVTRPDIAYAVHIVSQFMAAPRTIHFTAVLRILRYVKGTLGHGLQF 1169

Query: 61   SSQSSLVLSGYSDADWARDPTDQCSTTGYCFYLRDSLISWRSKKQRVVSRSSTESEYRAL 120
            SSQSSLVLSGYSDADWA DPTD+ STTGYCFYL DSLISWRSKKQ VVSRSSTESEYRAL
Sbjct: 1170 SSQSSLVLSGYSDADWAGDPTDRRSTTGYCFYLGDSLISWRSKKQSVVSRSSTESEYRAL 1229

Query: 121  ADANAELLWLHWLLADMGVPQQGPILLHCDNRSAIQIAHNDVFHERTKHIENDCHFIRHH 180
            ADA AELLWL WLLADMGVPQQGP LLHCDNRSAIQIAHNDVFHERTKHIENDCHFIRHH
Sbjct: 1230 ADATAELLWLRWLLADMGVPQQGPTLLHCDNRSAIQIAHNDVFHERTKHIENDCHFIRHH 1289

Query: 181  LLSNTLLLRSVSTTEQPADIFTKALPSTRFNQLLTKLKLTATLPP 226
            LLS+TLLL+S+STTEQPADIFTKALPSTRFNQ+ TKLKLTATLPP
Sbjct: 1290 LLSHTLLLQSISTTEQPADIFTKALPSTRFNQIRTKLKLTATLPP 1334

[Close]

BLAST of Cmc08g0223431 vs. NCBI nr
Match: KAA0057254.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 405.2 bits (1040), Expect = 3.6e-109
Identity = 202/225 (89.78%), Postives = 210/225 (93.33%), Query Frame = 0


Query: 1    MSLYRQLFGNLIYLTVNRPDIAYVVHIVSQFMAAPRTTYFTTVLRILRYIKGTLGHELQF 60
            +SLYRQL G+LIYLTV RPDIAY VHIVSQFMAAPRT +FT VLRILRY+KGTLGH LQF
Sbjct: 1085 VSLYRQLVGSLIYLTVTRPDIAYAVHIVSQFMAAPRTIHFTAVLRILRYVKGTLGHGLQF 1144

Query: 61   SSQSSLVLSGYSDADWARDPTDQCSTTGYCFYLRDSLISWRSKKQRVVSRSSTESEYRAL 120
            SSQSSLVLSGYSDADWA DPTDQ STTGYCFYL DSLISWRSKKQ VVSRSSTESEYRAL
Sbjct: 1145 SSQSSLVLSGYSDADWAGDPTDQRSTTGYCFYLGDSLISWRSKKQSVVSRSSTESEYRAL 1204

Query: 121  ADANAELLWLHWLLADMGVPQQGPILLHCDNRSAIQIAHNDVFHERTKHIENDCHFIRHH 180
            ADA AELLWL WLLADMGVPQQGP LLHCDNRSAIQIAHNDVFHERTKHIENDCHFIRHH
Sbjct: 1205 ADATAELLWLRWLLADMGVPQQGPTLLHCDNRSAIQIAHNDVFHERTKHIENDCHFIRHH 1264

Query: 181  LLSNTLLLRSVSTTEQPADIFTKALPSTRFNQLLTKLKLTATLPP 226
            LLS+TLLL+S+STTEQPADIFTKALP TRFNQ+ TKLKLTATLPP
Sbjct: 1265 LLSHTLLLQSISTTEQPADIFTKALPFTRFNQIRTKLKLTATLPP 1309

[Close]

BLAST of Cmc08g0223431 vs. NCBI nr
Match: TYK04714.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 404.4 bits (1038), Expect = 6.2e-109
Identity = 201/225 (89.33%), Postives = 211/225 (93.78%), Query Frame = 0


Query: 1    MSLYRQLFGNLIYLTVNRPDIAYVVHIVSQFMAAPRTTYFTTVLRILRYIKGTLGHELQF 60
            +SLYRQL G+LIYLTV RPDIAY VHIVSQFMAAPRT +FT VLRILRY+KGTLGH LQF
Sbjct: 1110 VSLYRQLVGSLIYLTVTRPDIAYAVHIVSQFMAAPRTIHFTAVLRILRYVKGTLGHGLQF 1169

Query: 61   SSQSSLVLSGYSDADWARDPTDQCSTTGYCFYLRDSLISWRSKKQRVVSRSSTESEYRAL 120
            SSQSSLVLSGYSDADWA DPTD+ STTGYCFYL DSLISWRSKKQ VVSRSSTESEYRAL
Sbjct: 1170 SSQSSLVLSGYSDADWAGDPTDRRSTTGYCFYLGDSLISWRSKKQSVVSRSSTESEYRAL 1229

Query: 121  ADANAELLWLHWLLADMGVPQQGPILLHCDNRSAIQIAHNDVFHERTKHIENDCHFIRHH 180
            ADA AELLWL WLLADMGVPQQGP LLHCDNRSAIQIAHNDVFHERTKHIENDCHFIRHH
Sbjct: 1230 ADATAELLWLRWLLADMGVPQQGPTLLHCDNRSAIQIAHNDVFHERTKHIENDCHFIRHH 1289

Query: 181  LLSNTLLLRSVSTTEQPADIFTKALPSTRFNQLLTKLKLTATLPP 226
            LLS+TLLL+S+STTEQPADIFTKALPSTRFNQ+ TKLKLTA+LPP
Sbjct: 1290 LLSHTLLLQSISTTEQPADIFTKALPSTRFNQIRTKLKLTASLPP 1334

[Close]

BLAST of Cmc08g0223431 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 8.6e-45
Identity = 98/221 (44.34%), Postives = 132/221 (59.73%), Query Frame = 0


Query: 4    YRQLFGNLIYLTVNRPDIAYVVHIVSQFMAAPRTTYFTTVLRILRYIKGTLGHELQFSSQ 63
            YR + G+L YL   RPDI+Y V+ +SQFM  P   +   + RILRY+ GT  H +     
Sbjct: 1245 YRGIVGSLQYLAFTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLKKG 1304

Query: 64   SSLVLSGYSDADWARDPTDQCSTTGYCFYLRDSLISWRSKKQRVVSRSSTESEYRALADA 123
            ++L L  YSDADWA D  D  ST GY  YL    ISW SKKQ+ V RSSTE+EYR++A+ 
Sbjct: 1305 NTLSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANT 1364

Query: 124  NAELLWLHWLLADMGVPQQGPILLHCDNRSAIQIAHNDVFHERTKHIENDCHFIRHHLLS 183
            ++E+ W+  LL ++G+    P +++CDN  A  +  N VFH R KHI  D HFIR+ + S
Sbjct: 1365 SSEMQWICSLLTELGIRLTRPPVIYCDNVGATYLCANPVFHSRMKHIAIDYHFIRNQVQS 1424

Query: 184  NTLLLRSVSTTEQPADIFTKALPSTRFNQLLTKLKLTATLP 225
              L +  VST +Q AD  TK L  T F    +K+ +T   P
Sbjct: 1425 GALRVVHVSTHDQLADTLTKPLSRTAFQNFASKIGVTRVPP 1465

[Close]

BLAST of Cmc08g0223431 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 4.7e-43
Identity = 94/221 (42.53%), Postives = 130/221 (58.82%), Query Frame = 0


Query: 4    YRQLFGNLIYLTVNRPDIAYVVHIVSQFMAAPRTTYFTTVLRILRYIKGTLGHELQFSSQ 63
            YR + G+L YL   RPD++Y V+ +SQ+M  P   ++  + R+LRY+ GT  H +     
Sbjct: 1228 YRGIVGSLQYLAFTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFLKKG 1287

Query: 64   SSLVLSGYSDADWARDPTDQCSTTGYCFYLRDSLISWRSKKQRVVSRSSTESEYRALADA 123
            ++L L  YSDADWA D  D  ST GY  YL    ISW SKKQ+ V RSSTE+EYR++A+ 
Sbjct: 1288 NTLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANT 1347

Query: 124  NAELLWLHWLLADMGVPQQGPILLHCDNRSAIQIAHNDVFHERTKHIENDCHFIRHHLLS 183
            ++EL W+  LL ++G+    P +++CDN  A  +  N VFH R KHI  D HFIR+ + S
Sbjct: 1348 SSELQWICSLLTELGIQLSHPPVIYCDNVGATYLCANPVFHSRMKHIALDYHFIRNQVQS 1407

Query: 184  NTLLLRSVSTTEQPADIFTKALPSTRFNQLLTKLKLTATLP 225
              L +  VST +Q AD  TK L    F     K+ +    P
Sbjct: 1408 GALRVVHVSTHDQLADTLTKPLSRVAFQNFSRKIGVIKVPP 1448

[Close]

BLAST of Cmc08g0223431 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 157.9 bits (398), Expect = 1.3e-37
Identity = 89/219 (40.64%), Postives = 132/219 (60.27%), Query Frame = 0


Query: 5    RQLFGNLIYLTV-NRPDIAYVVHIVSQFMAAPRTTYFTTVLRILRYIKGTLGHELQFSSQ 64
            R L G L+Y+ +  RPD+   V+I+S++ +   +  +  + R+LRY+KGT+  +L F   
Sbjct: 1182 RSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKN 1241

Query: 65   SSL--VLSGYSDADWARDPTDQCSTTGYCFYLRD-SLISWRSKKQRVVSRSSTESEYRAL 124
             +    + GY D+DWA    D+ STTGY F + D +LI W +K+Q  V+ SSTE+EY AL
Sbjct: 1242 LAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMAL 1301

Query: 125  ADANAELLWLHWLLADMGVPQQGPILLHCDNRSAIQIAHNDVFHERTKHIENDCHFIRHH 184
             +A  E LWL +LL  + +  + PI ++ DN+  I IA+N   H+R KHI+   HF R  
Sbjct: 1302 FEAVREALWLKFLLTSINIKLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFAREQ 1361

Query: 185  LLSNTLLLRSVSTTEQPADIFTKALPSTRFNQLLTKLKL 220
            + +N + L  + T  Q ADIFTK LP+ RF +L  KL L
Sbjct: 1362 VQNNVICLEYIPTENQLADIFTKPLPAARFVELRDKLGL 1400

[Close]

BLAST of Cmc08g0223431 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 2.5e-36
Identity = 84/208 (40.38%), Postives = 129/208 (62.02%), Query Frame = 0


Query: 4    YRQLFGNLIYLTV-NRPDIAYVVHIVSQFMAAPRTTYFTTVLRILRYIKGTLGHELQFSS 63
            Y    G+L+Y  V  RPDIA+ V +VS+F+  P   ++  V  ILRY++GT G  L F  
Sbjct: 1111 YSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFGG 1170

Query: 64   QSSLVLSGYSDADWARDPTDQCSTTGYCFYLRDSLISWRSKKQRVVSRSSTESEYRALAD 123
             S  +L GY+DAD A D  ++ S+TGY F      ISW+SK Q+ V+ S+TE+EY A  +
Sbjct: 1171 -SDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATE 1230

Query: 124  ANAELLWLHWLLADMGVPQQGPILLHCDNRSAIQIAHNDVFHERTKHIENDCHFIRHHLL 183
               E++WL   L ++G+ Q+   +++CD++SAI ++ N ++H RTKHI+   H+IR  + 
Sbjct: 1231 TGKEMIWLKRFLQELGLHQK-EYVVYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVD 1290

Query: 184  SNTLLLRSVSTTEQPADIFTKALPSTRF 211
              +L +  +ST E PAD+ TK +P  +F
Sbjct: 1291 DESLKVLKISTNENPADMLTKVVPRNKF 1316

[Close]

BLAST of Cmc08g0223431 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 6.8e-26
Identity = 61/126 (48.41%), Postives = 82/126 (65.08%), Query Frame = 0


Query: 4   YRQLFGNLIYLTVNRPDIAYVVHIVSQFMAAPRTTYFTTVLRILRYIKGTLGHELQFSSQ 63
           +R + G L YLT+ RPDI+Y V+IV Q M  P    F  + R+LRY+KGT+ H L     
Sbjct: 100 FRSIVGALQYLTLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKN 159

Query: 64  SSLVLSGYSDADWARDPTDQCSTTGYCFYLRDSLISWRSKKQRVVSRSSTESEYRALADA 123
           S L +  + D+DWA   + + STTG+C +L  ++ISW +K+Q  VSRSSTE+EYRALA  
Sbjct: 160 SKLNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALT 219

Query: 124 NAELLW 130
            AEL W
Sbjct: 220 AAELTW 225

[Close]

BLAST of Cmc08g0223431 vs. ExPASy TrEMBL
Match: A0A5A7SMY1 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold447G00400 PE=4 SV=1)

HSP 1 Score: 453.4 bits (1165), Expect = 5.7e-124
Identity = 225/225 (100.00%), Postives = 225/225 (100.00%), Query Frame = 0


Query: 1   MSLYRQLFGNLIYLTVNRPDIAYVVHIVSQFMAAPRTTYFTTVLRILRYIKGTLGHELQF 60
           MSLYRQLFGNLIYLTVNRPDIAYVVHIVSQFMAAPRTTYFTTVLRILRYIKGTLGHELQF
Sbjct: 433 MSLYRQLFGNLIYLTVNRPDIAYVVHIVSQFMAAPRTTYFTTVLRILRYIKGTLGHELQF 492

Query: 61  SSQSSLVLSGYSDADWARDPTDQCSTTGYCFYLRDSLISWRSKKQRVVSRSSTESEYRAL 120
           SSQSSLVLSGYSDADWARDPTDQCSTTGYCFYLRDSLISWRSKKQRVVSRSSTESEYRAL
Sbjct: 493 SSQSSLVLSGYSDADWARDPTDQCSTTGYCFYLRDSLISWRSKKQRVVSRSSTESEYRAL 552

Query: 121 ADANAELLWLHWLLADMGVPQQGPILLHCDNRSAIQIAHNDVFHERTKHIENDCHFIRHH 180
           ADANAELLWLHWLLADMGVPQQGPILLHCDNRSAIQIAHNDVFHERTKHIENDCHFIRHH
Sbjct: 553 ADANAELLWLHWLLADMGVPQQGPILLHCDNRSAIQIAHNDVFHERTKHIENDCHFIRHH 612

Query: 181 LLSNTLLLRSVSTTEQPADIFTKALPSTRFNQLLTKLKLTATLPP 226
           LLSNTLLLRSVSTTEQPADIFTKALPSTRFNQLLTKLKLTATLPP
Sbjct: 613 LLSNTLLLRSVSTTEQPADIFTKALPSTRFNQLLTKLKLTATLPP 657

[Close]

BLAST of Cmc08g0223431 vs. ExPASy TrEMBL
Match: A0A5A7VIT8 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1017G00050 PE=4 SV=1)

HSP 1 Score: 406.0 bits (1042), Expect = 1.0e-109
Identity = 202/225 (89.78%), Postives = 211/225 (93.78%), Query Frame = 0


Query: 1    MSLYRQLFGNLIYLTVNRPDIAYVVHIVSQFMAAPRTTYFTTVLRILRYIKGTLGHELQF 60
            +SLYRQL G+LIYLTV RPDIAY VHIVSQFMAAPRT +FT VLRILRY+KGTLGH LQF
Sbjct: 1110 VSLYRQLVGSLIYLTVTRPDIAYAVHIVSQFMAAPRTIHFTAVLRILRYVKGTLGHGLQF 1169

Query: 61   SSQSSLVLSGYSDADWARDPTDQCSTTGYCFYLRDSLISWRSKKQRVVSRSSTESEYRAL 120
            SSQSSLVLSGYSDADWA DPTD+ STTGYCFYL DSLISWRSKKQ VVSRSSTESEYRAL
Sbjct: 1170 SSQSSLVLSGYSDADWAGDPTDRRSTTGYCFYLGDSLISWRSKKQSVVSRSSTESEYRAL 1229

Query: 121  ADANAELLWLHWLLADMGVPQQGPILLHCDNRSAIQIAHNDVFHERTKHIENDCHFIRHH 180
            ADA AELLWL WLLADMGVPQQGP LLHCDNRSAIQIAHNDVFHERTKHIENDCHFIRHH
Sbjct: 1230 ADATAELLWLRWLLADMGVPQQGPTLLHCDNRSAIQIAHNDVFHERTKHIENDCHFIRHH 1289

Query: 181  LLSNTLLLRSVSTTEQPADIFTKALPSTRFNQLLTKLKLTATLPP 226
            LLS+TLLL+S+STTEQPADIFTKALPSTRFNQ+ TKLKLTATLPP
Sbjct: 1290 LLSHTLLLQSISTTEQPADIFTKALPSTRFNQIRTKLKLTATLPP 1334

[Close]

BLAST of Cmc08g0223431 vs. ExPASy TrEMBL
Match: A0A5A7T8F2 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold141G00410 PE=4 SV=1)

HSP 1 Score: 406.0 bits (1042), Expect = 1.0e-109
Identity = 202/225 (89.78%), Postives = 211/225 (93.78%), Query Frame = 0


Query: 1    MSLYRQLFGNLIYLTVNRPDIAYVVHIVSQFMAAPRTTYFTTVLRILRYIKGTLGHELQF 60
            +SLYRQL G+LIYLTV RPDIAY VHIVSQFMAAPRT +FT VLRILRY+KGTLGH LQF
Sbjct: 1110 VSLYRQLVGSLIYLTVTRPDIAYAVHIVSQFMAAPRTIHFTAVLRILRYVKGTLGHGLQF 1169

Query: 61   SSQSSLVLSGYSDADWARDPTDQCSTTGYCFYLRDSLISWRSKKQRVVSRSSTESEYRAL 120
            SSQSSLVLSGYSDADWA DPTD+ STTGYCFYL DSLISWRSKKQ VVSRSSTESEYRAL
Sbjct: 1170 SSQSSLVLSGYSDADWAGDPTDRRSTTGYCFYLGDSLISWRSKKQSVVSRSSTESEYRAL 1229

Query: 121  ADANAELLWLHWLLADMGVPQQGPILLHCDNRSAIQIAHNDVFHERTKHIENDCHFIRHH 180
            ADA AELLWL WLLADMGVPQQGP LLHCDNRSAIQIAHNDVFHERTKHIENDCHFIRHH
Sbjct: 1230 ADATAELLWLRWLLADMGVPQQGPTLLHCDNRSAIQIAHNDVFHERTKHIENDCHFIRHH 1289

Query: 181  LLSNTLLLRSVSTTEQPADIFTKALPSTRFNQLLTKLKLTATLPP 226
            LLS+TLLL+S+STTEQPADIFTKALPSTRFNQ+ TKLKLTATLPP
Sbjct: 1290 LLSHTLLLQSISTTEQPADIFTKALPSTRFNQIRTKLKLTATLPP 1334

[Close]

BLAST of Cmc08g0223431 vs. ExPASy TrEMBL
Match: A0A5A7UPX9 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold280G00890 PE=4 SV=1)

HSP 1 Score: 405.2 bits (1040), Expect = 1.8e-109
Identity = 202/225 (89.78%), Postives = 210/225 (93.33%), Query Frame = 0


Query: 1    MSLYRQLFGNLIYLTVNRPDIAYVVHIVSQFMAAPRTTYFTTVLRILRYIKGTLGHELQF 60
            +SLYRQL G+LIYLTV RPDIAY VHIVSQFMAAPRT +FT VLRILRY+KGTLGH LQF
Sbjct: 1085 VSLYRQLVGSLIYLTVTRPDIAYAVHIVSQFMAAPRTIHFTAVLRILRYVKGTLGHGLQF 1144

Query: 61   SSQSSLVLSGYSDADWARDPTDQCSTTGYCFYLRDSLISWRSKKQRVVSRSSTESEYRAL 120
            SSQSSLVLSGYSDADWA DPTDQ STTGYCFYL DSLISWRSKKQ VVSRSSTESEYRAL
Sbjct: 1145 SSQSSLVLSGYSDADWAGDPTDQRSTTGYCFYLGDSLISWRSKKQSVVSRSSTESEYRAL 1204

Query: 121  ADANAELLWLHWLLADMGVPQQGPILLHCDNRSAIQIAHNDVFHERTKHIENDCHFIRHH 180
            ADA AELLWL WLLADMGVPQQGP LLHCDNRSAIQIAHNDVFHERTKHIENDCHFIRHH
Sbjct: 1205 ADATAELLWLRWLLADMGVPQQGPTLLHCDNRSAIQIAHNDVFHERTKHIENDCHFIRHH 1264

Query: 181  LLSNTLLLRSVSTTEQPADIFTKALPSTRFNQLLTKLKLTATLPP 226
            LLS+TLLL+S+STTEQPADIFTKALP TRFNQ+ TKLKLTATLPP
Sbjct: 1265 LLSHTLLLQSISTTEQPADIFTKALPFTRFNQIRTKLKLTATLPP 1309

[Close]

BLAST of Cmc08g0223431 vs. ExPASy TrEMBL
Match: A0A5D3C0D7 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold68G00020 PE=4 SV=1)

HSP 1 Score: 404.4 bits (1038), Expect = 3.0e-109
Identity = 201/225 (89.33%), Postives = 211/225 (93.78%), Query Frame = 0


Query: 1    MSLYRQLFGNLIYLTVNRPDIAYVVHIVSQFMAAPRTTYFTTVLRILRYIKGTLGHELQF 60
            +SLYRQL G+LIYLTV RPDIAY VHIVSQFMAAPRT +FT VLRILRY+KGTLGH LQF
Sbjct: 1110 VSLYRQLVGSLIYLTVTRPDIAYAVHIVSQFMAAPRTIHFTAVLRILRYVKGTLGHGLQF 1169

Query: 61   SSQSSLVLSGYSDADWARDPTDQCSTTGYCFYLRDSLISWRSKKQRVVSRSSTESEYRAL 120
            SSQSSLVLSGYSDADWA DPTD+ STTGYCFYL DSLISWRSKKQ VVSRSSTESEYRAL
Sbjct: 1170 SSQSSLVLSGYSDADWAGDPTDRRSTTGYCFYLGDSLISWRSKKQSVVSRSSTESEYRAL 1229

Query: 121  ADANAELLWLHWLLADMGVPQQGPILLHCDNRSAIQIAHNDVFHERTKHIENDCHFIRHH 180
            ADA AELLWL WLLADMGVPQQGP LLHCDNRSAIQIAHNDVFHERTKHIENDCHFIRHH
Sbjct: 1230 ADATAELLWLRWLLADMGVPQQGPTLLHCDNRSAIQIAHNDVFHERTKHIENDCHFIRHH 1289

Query: 181  LLSNTLLLRSVSTTEQPADIFTKALPSTRFNQLLTKLKLTATLPP 226
            LLS+TLLL+S+STTEQPADIFTKALPSTRFNQ+ TKLKLTA+LPP
Sbjct: 1290 LLSHTLLLQSISTTEQPADIFTKALPSTRFNQIRTKLKLTASLPP 1334

[Close]

BLAST of Cmc08g0223431 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 180.6 bits (457), Expect = 1.4e-45
Identity = 96/202 (47.52%), Postives = 131/202 (64.85%), Query Frame = 0


Query: 4   YRQLFGNLIYLTVNRPDIAYVVHIVSQFMAAPRTTYFTTVLRILRYIKGTLGHELQFSSQ 63
           YR+L G L+YL + R DI++ V+ +SQF  APR  +   V++IL YIKGT+G  L +SSQ
Sbjct: 378 YRRLIGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQ 437

Query: 64  SSLVLSGYSDADWARDPTDQCSTTGYCFYLRDSLISWRSKKQRVVSRSSTESEYRALADA 123
           + + L  +SDA +      + ST GYC +L  SLISW+SKKQ+VVS+SS E+EYRAL+ A
Sbjct: 438 AEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFA 497

Query: 124 NAELLWLHWLLADMGVPQQGPILLHCDNRSAIQIAHNDVFHERTKHIENDCHFIRHHLLS 183
             E++WL     ++ +P   P LL CDN +AI IA N VFHERTKHIE+DCH +R   + 
Sbjct: 498 TDEMMWLAQFFRELQLPLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSVRERSVY 557

Query: 184 NTLLLRSVSTTEQPADIFTKAL 206
              L  S    ++  D FT+ L
Sbjct: 558 QATLSYSFQAYDE-QDGFTEYL 578

[Close]

BLAST of Cmc08g0223431 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 119.0 bits (297), Expect = 4.9e-27
Identity = 61/126 (48.41%), Postives = 82/126 (65.08%), Query Frame = 0


Query: 4   YRQLFGNLIYLTVNRPDIAYVVHIVSQFMAAPRTTYFTTVLRILRYIKGTLGHELQFSSQ 63
           +R + G L YLT+ RPDI+Y V+IV Q M  P    F  + R+LRY+KGT+ H L     
Sbjct: 100 FRSIVGALQYLTLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKN 159

Query: 64  SSLVLSGYSDADWARDPTDQCSTTGYCFYLRDSLISWRSKKQRVVSRSSTESEYRALADA 123
           S L +  + D+DWA   + + STTG+C +L  ++ISW +K+Q  VSRSSTE+EYRALA  
Sbjct: 160 SKLNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALT 219

Query: 124 NAELLW 130
            AEL W
Sbjct: 220 AAELTW 225

[Close]

BLAST of Cmc08g0223431 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 76.6 bits (187), Expect = 2.8e-14
Identity = 34/79 (43.04%), Postives = 52/79 (65.82%), Query Frame = 0


Query: 12 IYLTVNRPDIAYVVHIVSQFMAAPRTTYFTTVLRILRYIKGTLGHELQFSSQSSLVLSGY 71
          +YLT+ RPD+ + V+ +SQF +A RT     V ++L Y+KGT+G  L +S+ S L L  +
Sbjct: 1  MYLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAF 60

Query: 72 SDADWARDPTDQCSTTGYC 91
          +D+DWA  P  + S TG+C
Sbjct: 61 ADSDWASCPDTRRSVTGFC 79

The following BLAST results are available for this feature:

BLAST of Cmc08g0223431 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0025815.1	1.2e-123	100.00	putative mitochondrial protein [Cucumis melo var. makuwa] >TYK09641.1 putative m...	[more]
KAA0037745.1	2.1e-109	89.78	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0041601.1	2.1e-109	89.78	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0057254.1	3.6e-109	89.78	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK04714.1	6.2e-109	89.33	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]

BLAST of Cmc08g0223431 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94HW2	8.6e-45	44.34	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	4.7e-43	42.53	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P04146	1.3e-37	40.64	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P10978	2.5e-36	40.38	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P92519	6.8e-26	48.41	Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cmc08g0223431 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SMY1	5.7e-124	100.00	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5A7VIT8	1.0e-109	89.78	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7T8F2	1.0e-109	89.78	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7UPX9	1.8e-109	89.78	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3C0D7	3.0e-109	89.33	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]

BLAST of Cmc08g0223431 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	1.4e-45	47.52	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	4.9e-27	48.41	DNA/RNA polymerases superfamily protein	[more]
ATMG00240.1	2.8e-14	43.04	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439:SF343	SUBFAMILY NOT NAMED	coord: 93..217
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 93..217
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 70..207 e-value: 3.81816E-80 score: 234.285
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 4..175

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0223431.1	Cmc08g0223431.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
cellular_component	GO:0016020	membrane
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding