Cmc08g0223181 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0223181
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr08: 12398929 .. 12399360 (+)
RNA-Seq Expression	Cmc08g0223181
Synteny	Cmc08g0223181

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGCCTTTGCATTGACTACAGAAAGCTGAACAAGGTGACAGTCAAGAACCGCTATCCCTTACCTAGGATTGATGATTTGTTCGATCAGTTGCAAGGAGCCACCATCTTTTCTAAGATCGACCTACGATCAAGCTACCACCAGCTGAGGATCAAGGATAGTGATATTCCTAAGACCGCTTTCCGTCCCAGATACGGGCATTACGAGTTCATTGTGATGTCCTTTCGTTTGACTAATGCTCCTGCGATATTCATGGACTTGATGAACAGAGTGTTTAAGAACTTCTTATACACGTTTGTTATAGTTTTCATTGATGACATTTTGATTTACTCCAAGACTGAGGCTGAGCATGAGGAGCATTTACATCAGGTTTTGGAGACTCTTCGAGCTAATAAGCTGTATCCAAGTTCTCCAAGTGTGAGTTCTGGCTGA

mRNA sequence

ATGTGCCTTTGCATTGACTACAGAAAGCTGAACAAGGTGACAGTCAAGAACCGCTATCCCTTACCTAGGATTGATGATTTGTTCGATCAGTTGCAAGGAGCCACCATCTTTTCTAAGATCGACCTACGATCAAGCTACCACCAGCTGAGGATCAAGGATAGTGATATTCCTAAGACCGCTTTCCGTCCCAGATACGGGCATTACGAGTTCATTGTGATGTCCTTTCGTTTGACTAATGCTCCTGCGATATTCATGGACTTGATGAACAGAGTGTTTAAGAACTTCTTATACACGTTTGTTATAGTTTTCATTGATGACATTTTGATTTACTCCAAGACTGAGGCTGAGCATGAGGAGCATTTACATCAGGTTTTGGAGACTCTTCGAGCTAATAAGCTGTATCCAAGTTCTCCAAGTGTGAGTTCTGGCTGA

Coding sequence (CDS)

ATGTGCCTTTGCATTGACTACAGAAAGCTGAACAAGGTGACAGTCAAGAACCGCTATCCCTTACCTAGGATTGATGATTTGTTCGATCAGTTGCAAGGAGCCACCATCTTTTCTAAGATCGACCTACGATCAAGCTACCACCAGCTGAGGATCAAGGATAGTGATATTCCTAAGACCGCTTTCCGTCCCAGATACGGGCATTACGAGTTCATTGTGATGTCCTTTCGTTTGACTAATGCTCCTGCGATATTCATGGACTTGATGAACAGAGTGTTTAAGAACTTCTTATACACGTTTGTTATAGTTTTCATTGATGACATTTTGATTTACTCCAAGACTGAGGCTGAGCATGAGGAGCATTTACATCAGGTTTTGGAGACTCTTCGAGCTAATAAGCTGTATCCAAGTTCTCCAAGTGTGAGTTCTGGCTGA

Protein sequence

MCLCIDYRKLNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRSSYHQLRIKDSDIPKTAFRPRYGHYEFIVMSFRLTNAPAIFMDLMNRVFKNFLYTFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYPSSPSVSSG

Homology

[Close]

BLAST of Cmc08g0223181 vs. NCBI nr
Match: TYK22591.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 271.2 bits (692), Expect = 5.2e-69
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0


Query: 1   MCLCIDYRKLNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRSSYHQLRIKDSDIPKTA 60
           MCLCIDYRKLNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRSSYHQLRIKDSDIPKTA
Sbjct: 395 MCLCIDYRKLNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRSSYHQLRIKDSDIPKTA 454

Query: 61  FRPRYGHYEFIVMSFRLTNAPAIFMDLMNRVFKNFLYTFVIVFIDDILIYSKTEAEHEEH 120
           FRPRYGHYEFIVMSFRLTNAPAIFMDLMNRVFKNFLYTFVIVFIDDILIYSKTEAEHEEH
Sbjct: 455 FRPRYGHYEFIVMSFRLTNAPAIFMDLMNRVFKNFLYTFVIVFIDDILIYSKTEAEHEEH 514

Query: 121 LHQVLETLRANKL 134
           LHQVLETLRANKL
Sbjct: 515 LHQVLETLRANKL 527

[Close]

BLAST of Cmc08g0223181 vs. NCBI nr
Match: KAA0025873.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 271.2 bits (692), Expect = 5.2e-69
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0


Query: 1   MCLCIDYRKLNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRSSYHQLRIKDSDIPKTA 60
           MCLCIDYRKLNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRSSYHQLRIKDSDIPKTA
Sbjct: 683 MCLCIDYRKLNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRSSYHQLRIKDSDIPKTA 742

Query: 61  FRPRYGHYEFIVMSFRLTNAPAIFMDLMNRVFKNFLYTFVIVFIDDILIYSKTEAEHEEH 120
           FRPRYGHYEFIVMSFRLTNAPAIFMDLMNRVFKNFLYTFVIVFIDDILIYSKTEAEHEEH
Sbjct: 743 FRPRYGHYEFIVMSFRLTNAPAIFMDLMNRVFKNFLYTFVIVFIDDILIYSKTEAEHEEH 802

Query: 121 LHQVLETLRANKL 134
           LHQVLETLRANKL
Sbjct: 803 LHQVLETLRANKL 815

[Close]

BLAST of Cmc08g0223181 vs. NCBI nr
Match: KAA0054634.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 252.3 bits (643), Expect = 2.5e-63
Identity = 121/134 (90.30%), Postives = 128/134 (95.52%), Query Frame = 0


Query: 1   MCLCIDYRKLNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRSSYHQLRIKDSDIPKTA 60
           MCLCIDYR+LNKVTVKNRYPLPRIDDLFDQLQGAT+FSKIDLRS YHQLRI+D DIPKT 
Sbjct: 610 MCLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTT 669

Query: 61  FRPRYGHYEFIVMSFRLTNAPAIFMDLMNRVFKNFLYTFVIVFIDDILIYSKTEAEHEEH 120
           FR RYGHYEF+VMSF LTNAPA+FMDLMNRVFK+FL +FVIVFIDDILIYSKTEAEHEEH
Sbjct: 670 FRSRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 729

Query: 121 LHQVLETLRANKLY 135
           LHQVLETLRANKLY
Sbjct: 730 LHQVLETLRANKLY 743

[Close]

BLAST of Cmc08g0223181 vs. NCBI nr
Match: KAA0063946.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 250.8 bits (639), Expect = 7.3e-63
Identity = 122/134 (91.04%), Postives = 129/134 (96.27%), Query Frame = 0


Query: 1    MCLCIDYRKLNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRSSYHQLRIKDSDIPKTA 60
            M LCIDYR+LNKVTVKNRYPLPRIDDLFDQLQGAT+FSKIDLRS YHQLRI+DSDIPKTA
Sbjct: 867  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA 926

Query: 61   FRPRYGHYEFIVMSFRLTNAPAIFMDLMNRVFKNFLYTFVIVFIDDILIYSKTEAEHEEH 120
            FR RYGHYEF+VMSF LTNAPA+FMDLMNRVFK+FL +FVIVFIDDILIYSKTEAEHEEH
Sbjct: 927  FRSRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 986

Query: 121  LHQVLETLRANKLY 135
            LHQVLETLRANKLY
Sbjct: 987  LHQVLETLRANKLY 1000

[Close]

BLAST of Cmc08g0223181 vs. NCBI nr
Match: TYK01306.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 250.4 bits (638), Expect = 9.5e-63
Identity = 123/134 (91.79%), Postives = 129/134 (96.27%), Query Frame = 0


Query: 1   MCLCIDYRKLNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRSSYHQLRIKDSDIPKTA 60
           M LCIDYR+LNKVTVKNRYPLPRIDDLFDQLQGAT+FSKIDLRS YHQLRI+DSDIPKTA
Sbjct: 601 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA 660

Query: 61  FRPRYGHYEFIVMSFRLTNAPAIFMDLMNRVFKNFLYTFVIVFIDDILIYSKTEAEHEEH 120
           FR RYGHYEFIVMSF LTNAPA+FMDLMNRVFK+FL +FVIVFIDDILIYSKTEAEHEEH
Sbjct: 661 FRLRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 720

Query: 121 LHQVLETLRANKLY 135
           LHQVLETLRANKLY
Sbjct: 721 LHQVLETLRANKLY 734

[Close]

BLAST of Cmc08g0223181 vs. ExPASy Swiss-Prot
Match: P31843 (RNA-directed DNA polymerase homolog OS=Oenothera berteroana OX=3950 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 2.0e-31
Identity = 70/128 (54.69%), Postives = 90/128 (70.31%), Query Frame = 0


Query: 3   LCIDYRKLNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRSSYHQLRIKDSDIPKTAFR 62
           +CIDYR L KVT+KN+YP+PR+DDLFD+L  AT F+K+DLRS Y Q+RI   D PKT   
Sbjct: 8   MCIDYRALTKVTIKNKYPIPRVDDLFDRLAQATWFTKLDLRSGYWQVRIAKGDEPKTTCV 67

Query: 63  PRYGHYEFIVMSFRLTNAPAIFMDLMNRVFKNFLYTFVIVFIDDIL---IYSKTEAEHEE 122
            RYG +EF VM F LTNA A F +LMN V   +L  FV+V++DD++   IYS +  EH +
Sbjct: 68  TRYGSFEFRVMPFGLTNALATFCNLMNNVLYEYLDHFVVVYLDDLVVYTIYSNSLHEHIK 127

Query: 123 HLHQVLET 128
           HL  V E+
Sbjct: 128 HLRVVRES 135

[Close]

BLAST of Cmc08g0223181 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 118.6 bits (296), Expect = 5.7e-26
Identity = 61/131 (46.56%), Postives = 84/131 (64.12%), Query Frame = 0


Query: 3   LCIDYRKLNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRSSYHQLRIKDSDIPKTAFR 62
           LC+DYR LNK T+ + +PLPRID+L  ++  A IF+ +DL S YHQ+ ++  D  KTAF 
Sbjct: 648 LCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFV 707

Query: 63  PRYGHYEFIVMSFRLTNAPAIFMDLMNRVFKNFLYTFVIVFIDDILIYSKTEAEHEEHLH 122
              G YE+ VM F L NAP+ F   M   F++    FV V++DDILI+S++  EH +HL 
Sbjct: 708 TPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLD 767

Query: 123 QVLETLRANKL 134
            VLE L+   L
Sbjct: 768 TVLERLKNENL 776

[Close]

BLAST of Cmc08g0223181 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 118.6 bits (296), Expect = 5.7e-26
Identity = 61/131 (46.56%), Postives = 84/131 (64.12%), Query Frame = 0


Query: 3   LCIDYRKLNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRSSYHQLRIKDSDIPKTAFR 62
           LC+DYR LNK T+ + +PLPRID+L  ++  A IF+ +DL S YHQ+ ++  D  KTAF 
Sbjct: 674 LCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFV 733

Query: 63  PRYGHYEFIVMSFRLTNAPAIFMDLMNRVFKNFLYTFVIVFIDDILIYSKTEAEHEEHLH 122
              G YE+ VM F L NAP+ F   M   F++    FV V++DDILI+S++  EH +HL 
Sbjct: 734 TPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLD 793

Query: 123 QVLETLRANKL 134
            VLE L+   L
Sbjct: 794 TVLERLKNENL 802

[Close]

BLAST of Cmc08g0223181 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.4e-24
Identity = 53/127 (41.73%), Postives = 86/127 (67.72%), Query Frame = 0


Query: 3   LCIDYRKLNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRSSYHQLRIKDSDIPKTAFR 62
           + +DY+ LNK    N YPLP I+ L  ++QG+TIF+K+DL+S+YH +R++  D  K AFR
Sbjct: 464 MVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFR 523

Query: 63  PRYGHYEFIVMSFRLTNAPAIFMDLMNRVFKNFLYTFVIVFIDDILIYSKTEAEHEEHLH 122
              G +E++VM + ++ APA F   +N +      + V+ ++DDILI+SK+E+EH +H+ 
Sbjct: 524 CPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVK 583

Query: 123 QVLETLR 130
            VL+ L+
Sbjct: 584 DVLQKLK 590

[Close]

BLAST of Cmc08g0223181 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.4e-24
Identity = 53/127 (41.73%), Postives = 86/127 (67.72%), Query Frame = 0


Query: 3   LCIDYRKLNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRSSYHQLRIKDSDIPKTAFR 62
           + +DY+ LNK    N YPLP I+ L  ++QG+TIF+K+DL+S+YH +R++  D  K AFR
Sbjct: 464 MVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFR 523

Query: 63  PRYGHYEFIVMSFRLTNAPAIFMDLMNRVFKNFLYTFVIVFIDDILIYSKTEAEHEEHLH 122
              G +E++VM + ++ APA F   +N +      + V+ ++DDILI+SK+E+EH +H+ 
Sbjct: 524 CPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVK 583

Query: 123 QVLETLR 130
            VL+ L+
Sbjct: 584 DVLQKLK 590

[Close]

BLAST of Cmc08g0223181 vs. ExPASy TrEMBL
Match: A0A5D3DFW7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold195G00080 PE=4 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 2.5e-69
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0


Query: 1   MCLCIDYRKLNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRSSYHQLRIKDSDIPKTA 60
           MCLCIDYRKLNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRSSYHQLRIKDSDIPKTA
Sbjct: 395 MCLCIDYRKLNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRSSYHQLRIKDSDIPKTA 454

Query: 61  FRPRYGHYEFIVMSFRLTNAPAIFMDLMNRVFKNFLYTFVIVFIDDILIYSKTEAEHEEH 120
           FRPRYGHYEFIVMSFRLTNAPAIFMDLMNRVFKNFLYTFVIVFIDDILIYSKTEAEHEEH
Sbjct: 455 FRPRYGHYEFIVMSFRLTNAPAIFMDLMNRVFKNFLYTFVIVFIDDILIYSKTEAEHEEH 514

Query: 121 LHQVLETLRANKL 134
           LHQVLETLRANKL
Sbjct: 515 LHQVLETLRANKL 527

[Close]

BLAST of Cmc08g0223181 vs. ExPASy TrEMBL
Match: A0A5A7SMH1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G001520 PE=4 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 2.5e-69
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0


Query: 1   MCLCIDYRKLNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRSSYHQLRIKDSDIPKTA 60
           MCLCIDYRKLNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRSSYHQLRIKDSDIPKTA
Sbjct: 683 MCLCIDYRKLNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRSSYHQLRIKDSDIPKTA 742

Query: 61  FRPRYGHYEFIVMSFRLTNAPAIFMDLMNRVFKNFLYTFVIVFIDDILIYSKTEAEHEEH 120
           FRPRYGHYEFIVMSFRLTNAPAIFMDLMNRVFKNFLYTFVIVFIDDILIYSKTEAEHEEH
Sbjct: 743 FRPRYGHYEFIVMSFRLTNAPAIFMDLMNRVFKNFLYTFVIVFIDDILIYSKTEAEHEEH 802

Query: 121 LHQVLETLRANKL 134
           LHQVLETLRANKL
Sbjct: 803 LHQVLETLRANKL 815

[Close]

BLAST of Cmc08g0223181 vs. ExPASy TrEMBL
Match: A0A5A7UHL7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G004390 PE=4 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 1.2e-63
Identity = 121/134 (90.30%), Postives = 128/134 (95.52%), Query Frame = 0


Query: 1   MCLCIDYRKLNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRSSYHQLRIKDSDIPKTA 60
           MCLCIDYR+LNKVTVKNRYPLPRIDDLFDQLQGAT+FSKIDLRS YHQLRI+D DIPKT 
Sbjct: 610 MCLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTT 669

Query: 61  FRPRYGHYEFIVMSFRLTNAPAIFMDLMNRVFKNFLYTFVIVFIDDILIYSKTEAEHEEH 120
           FR RYGHYEF+VMSF LTNAPA+FMDLMNRVFK+FL +FVIVFIDDILIYSKTEAEHEEH
Sbjct: 670 FRSRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 729

Query: 121 LHQVLETLRANKLY 135
           LHQVLETLRANKLY
Sbjct: 730 LHQVLETLRANKLY 743

[Close]

BLAST of Cmc08g0223181 vs. ExPASy TrEMBL
Match: A0A5A7VBY3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold616G00920 PE=4 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 3.5e-63
Identity = 122/134 (91.04%), Postives = 129/134 (96.27%), Query Frame = 0


Query: 1    MCLCIDYRKLNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRSSYHQLRIKDSDIPKTA 60
            M LCIDYR+LNKVTVKNRYPLPRIDDLFDQLQGAT+FSKIDLRS YHQLRI+DSDIPKTA
Sbjct: 867  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA 926

Query: 61   FRPRYGHYEFIVMSFRLTNAPAIFMDLMNRVFKNFLYTFVIVFIDDILIYSKTEAEHEEH 120
            FR RYGHYEF+VMSF LTNAPA+FMDLMNRVFK+FL +FVIVFIDDILIYSKTEAEHEEH
Sbjct: 927  FRSRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 986

Query: 121  LHQVLETLRANKLY 135
            LHQVLETLRANKLY
Sbjct: 987  LHQVLETLRANKLY 1000

[Close]

BLAST of Cmc08g0223181 vs. ExPASy TrEMBL
Match: A0A5D3BSV9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold827G00060 PE=4 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 4.6e-63
Identity = 123/134 (91.79%), Postives = 129/134 (96.27%), Query Frame = 0


Query: 1   MCLCIDYRKLNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRSSYHQLRIKDSDIPKTA 60
           M LCIDYR+LNKVTVKNRYPLPRIDDLFDQLQGAT+FSKIDLRS YHQLRI+DSDIPKTA
Sbjct: 601 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA 660

Query: 61  FRPRYGHYEFIVMSFRLTNAPAIFMDLMNRVFKNFLYTFVIVFIDDILIYSKTEAEHEEH 120
           FR RYGHYEFIVMSF LTNAPA+FMDLMNRVFK+FL +FVIVFIDDILIYSKTEAEHEEH
Sbjct: 661 FRLRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 720

Query: 121 LHQVLETLRANKLY 135
           LHQVLETLRANKLY
Sbjct: 721 LHQVLETLRANKLY 734

The following BLAST results are available for this feature:

BLAST of Cmc08g0223181 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK22591.1	5.2e-69	100.00	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0025873.1	5.2e-69	100.00	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0054634.1	2.5e-63	90.30	pol protein [Cucumis melo var. makuwa]	[more]
KAA0063946.1	7.3e-63	91.04	pol protein [Cucumis melo var. makuwa]	[more]
TYK01306.1	9.5e-63	91.79	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc08g0223181 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P31843	2.0e-31	54.69	RNA-directed DNA polymerase homolog OS=Oenothera berteroana OX=3950 PE=4 SV=1	[more]
Q99315	5.7e-26	46.56	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	5.7e-26	46.56	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
P0CT41	1.4e-24	41.73	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	1.4e-24	41.73	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Cmc08g0223181 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DFW7	2.5e-69	100.00	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold19...	[more]
A0A5A7SMH1	2.5e-69	100.00	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34...	[more]
A0A5A7UHL7	1.2e-63	90.30	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24...	[more]
A0A5A7VBY3	3.5e-63	91.04	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold61...	[more]
A0A5D3BSV9	4.6e-63	91.79	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold82...	[more]

BLAST of Cmc08g0223181 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 2..133 e-value: 3.8E-18 score: 65.8
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 19..134 e-value: 7.2E-56 score: 190.8
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 3..79 e-value: 7.2E-56 score: 190.8
None	No IPR available	PANTHER	PTHR24559:SF324	TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 4..130
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 4..130
None	No IPR available	CDD	cd01647	RT_LTR	coord: 3..136 e-value: 8.20543E-67 score: 198.588
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 3..134

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0223181.1	Cmc08g0223181.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding