Cmc08g0222961 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0222961
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr08: 12111453 .. 12112154 (+)
RNA-Seq Expression	Cmc08g0222961
Synteny	Cmc08g0222961

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGATTTGGGAGATGCACAATATGTTCTTGGAATCCAAATTGTTCAGAATCGTAAAAATAGAACACTAGCCATGTCTCAAGCATCTTATATTGACAAAATACTTTTAAGATATAAAATGCAGAATTCCAAAAATGGTTTGTTGCCGTACAAATATGGAATTCATTTGTCAAAGGAACAATGTTTTAAGACACCTCAAGAGGTTGGGGATATGAGAAAAATTCCCTATGCTTCCACTGTTGGAAGTTTGATGTACGCAATGTTATGTACTAGACCTGACATTTGCTTTTCAGTAGGGATGGTCAGTAGGTATCAGTCCAATCCTGGACATGATCACTGGACAACCGTTAAGAATATTCTAAAATATCTTAGGAGAACAAAAGATTACATGCTCGTTTATGGTACTAAGGATCTGATCCTTACCAGATATATTGATTCTGATTTCCAAATGGATAAAGATGCTAGAAAGTCTACATCAGGATCAGTATTCACTCTAAACGGAGAAGCAGTAGTATGGAGAAGCAGAAAACAGAGTTTTATAGCCGACTCCATAATGGAAGCTGAATATGTTGCAGCTTGCGAAGCAGCAAAGGAAGCAGTATGGCTAAGAAAATTCTTAACTGATCTGGAAATTGTTCCAAATATGCATCTGCCAATCACTTTATACTGTGACAACAGTGGTGCAGTTGCAAATTCATGA

mRNA sequence

ATGAAAGATTTGGGAGATGCACAATATGTTCTTGGAATCCAAATTGTTCAGAATCGTAAAAATAGAACACTAGCCATGTCTCAAGCATCTTATATTGACAAAATACTTTTAAGATATAAAATGCAGAATTCCAAAAATGGTTTGTTGCCGTACAAATATGGAATTCATTTGTCAAAGGAACAATGTTTTAAGACACCTCAAGAGGTTGGGGATATGAGAAAAATTCCCTATGCTTCCACTGTTGGAAGTTTGATGTACGCAATGTTATGTACTAGACCTGACATTTGCTTTTCAGTAGGGATGGTCAGTAGGTATCAGTCCAATCCTGGACATGATCACTGGACAACCGTTAAGAATATTCTAAAATATCTTAGGAGAACAAAAGATTACATGCTCGTTTATGGTACTAAGGATCTGATCCTTACCAGATATATTGATTCTGATTTCCAAATGGATAAAGATGCTAGAAAGTCTACATCAGGATCAGTATTCACTCTAAACGGAGAAGCAGTAGTATGGAGAAGCAGAAAACAGAGTTTTATAGCCGACTCCATAATGGAAGCTGAATATGTTGCAGCTTGCGAAGCAGCAAAGGAAGCAGTATGGCTAAGAAAATTCTTAACTGATCTGGAAATTGTTCCAAATATGCATCTGCCAATCACTTTATACTGTGACAACAGTGGTGCAGTTGCAAATTCATGA

Coding sequence (CDS)

ATGAAAGATTTGGGAGATGCACAATATGTTCTTGGAATCCAAATTGTTCAGAATCGTAAAAATAGAACACTAGCCATGTCTCAAGCATCTTATATTGACAAAATACTTTTAAGATATAAAATGCAGAATTCCAAAAATGGTTTGTTGCCGTACAAATATGGAATTCATTTGTCAAAGGAACAATGTTTTAAGACACCTCAAGAGGTTGGGGATATGAGAAAAATTCCCTATGCTTCCACTGTTGGAAGTTTGATGTACGCAATGTTATGTACTAGACCTGACATTTGCTTTTCAGTAGGGATGGTCAGTAGGTATCAGTCCAATCCTGGACATGATCACTGGACAACCGTTAAGAATATTCTAAAATATCTTAGGAGAACAAAAGATTACATGCTCGTTTATGGTACTAAGGATCTGATCCTTACCAGATATATTGATTCTGATTTCCAAATGGATAAAGATGCTAGAAAGTCTACATCAGGATCAGTATTCACTCTAAACGGAGAAGCAGTAGTATGGAGAAGCAGAAAACAGAGTTTTATAGCCGACTCCATAATGGAAGCTGAATATGTTGCAGCTTGCGAAGCAGCAAAGGAAGCAGTATGGCTAAGAAAATTCTTAACTGATCTGGAAATTGTTCCAAATATGCATCTGCCAATCACTTTATACTGTGACAACAGTGGTGCAGTTGCAAATTCATGA

Protein sequence

MKDLGDAQYVLGIQIVQNRKNRTLAMSQASYIDKILLRYKMQNSKNGLLPYKYGIHLSKEQCFKTPQEVGDMRKIPYASTVGSLMYAMLCTRPDICFSVGMVSRYQSNPGHDHWTTVKNILKYLRRTKDYMLVYGTKDLILTRYIDSDFQMDKDARKSTSGSVFTLNGEAVVWRSRKQSFIADSIMEAEYVAACEAAKEAVWLRKFLTDLEIVPNMHLPITLYCDNSGAVANS

Homology

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BLAST of Cmc08g0222961 vs. NCBI nr
Match: ADJ18449.1 (gag/pol protein, partial [Bryonia dioica])

HSP 1 Score: 413.7 bits (1062), Expect = 1.1e-111
Identity = 201/233 (86.27%), Postives = 216/233 (92.70%), Query Frame = 0


Query: 1    MKDLGDAQYVLGIQIVQNRKNRTLAMSQASYIDKILLRYKMQNSKNGLLPYKYGIHLSKE 60
            MKDLG+AQY+LGIQIV+NRKN+TLAMSQASYIDK+L RYKMQNSK G LP+++GIHLSKE
Sbjct: 1028 MKDLGEAQYILGIQIVRNRKNKTLAMSQASYIDKVLSRYKMQNSKKGQLPFRHGIHLSKE 1087

Query: 61   QCFKTPQEVGDMRKIPYASTVGSLMYAMLCTRPDICFSVGMVSRYQSNPGHDHWTTVKNI 120
            QC KTPQEV DMR IPY+S VGSLMYAMLCTRPDIC+SVG+VSRYQSNPG DHWT VKNI
Sbjct: 1088 QCPKTPQEVEDMRNIPYSSAVGSLMYAMLCTRPDICYSVGIVSRYQSNPGRDHWTAVKNI 1147

Query: 121  LKYLRRTKDYMLVYGTKDLILTRYIDSDFQMDKDARKSTSGSVFTLNGEAVVWRSRKQSF 180
            LKYLRRT++YMLVYG KDLILT Y DSDFQ DKDARKSTSGSVFTLNG AVVWRS KQ+ 
Sbjct: 1148 LKYLRRTRNYMLVYGAKDLILTGYTDSDFQSDKDARKSTSGSVFTLNGGAVVWRSVKQTC 1207

Query: 181  IADSIMEAEYVAACEAAKEAVWLRKFLTDLEIVPNMHLPITLYCDNSGAVANS 234
            IADS MEAEYVAACEAAKEAVWLRKFLTDLE+VPNMHLPITLYCDNSGAVANS
Sbjct: 1208 IADSTMEAEYVAACEAAKEAVWLRKFLTDLEVVPNMHLPITLYCDNSGAVANS 1260

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BLAST of Cmc08g0222961 vs. NCBI nr
Match: KAA0052272.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 407.9 bits (1047), Expect = 5.8e-110
Identity = 200/233 (85.84%), Postives = 213/233 (91.42%), Query Frame = 0


Query: 1   MKDLGDAQYVLGIQIVQNRKNRTLAMSQASYIDKILLRYKMQNSKNGLLPYKYGIHLSKE 60
           MKDL +AQYVLGI+IV+NRKN+TLAMSQ SYIDK+L RYKMQNSK  LLPY+YGIHLSKE
Sbjct: 331 MKDLENAQYVLGIEIVRNRKNKTLAMSQTSYIDKMLSRYKMQNSKKSLLPYRYGIHLSKE 390

Query: 61  QCFKTPQEVGDMRKIPYASTVGSLMYAMLCTRPDICFSVGMVSRYQSNPGHDHWTTVKNI 120
           QC KTPQEV DM  IPYAS VGSLMYAMLCTRPDIC+SVG+VSRYQSNPG DHWT VKNI
Sbjct: 391 QCPKTPQEVKDMSNIPYASAVGSLMYAMLCTRPDICYSVGIVSRYQSNPGSDHWTAVKNI 450

Query: 121 LKYLRRTKDYMLVYGTKDLILTRYIDSDFQMDKDARKSTSGSVFTLNGEAVVWRSRKQSF 180
           LKYLRRTKDYMLVYG+KDLILTRY DSDFQ DKD RKSTS SVFTLNGEAVVW+  KQS 
Sbjct: 451 LKYLRRTKDYMLVYGSKDLILTRYTDSDFQSDKDVRKSTSESVFTLNGEAVVWKRIKQSC 510

Query: 181 IADSIMEAEYVAACEAAKEAVWLRKFLTDLEIVPNMHLPITLYCDNSGAVANS 234
           IADS MEAEYVA+CEAAKEAVWL+KFLTDLEIVPN+HLPITLYCDNSGAVANS
Sbjct: 511 IADSTMEAEYVASCEAAKEAVWLKKFLTDLEIVPNIHLPITLYCDNSGAVANS 563

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BLAST of Cmc08g0222961 vs. NCBI nr
Match: KAA0046768.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 398.7 bits (1023), Expect = 3.5e-107
Identity = 197/233 (84.55%), Postives = 209/233 (89.70%), Query Frame = 0


Query: 1   MKDLGDAQYVLGIQIVQNRKNRTLAMSQASYIDKILLRYKMQNSKNGLLPYKYGIHLSKE 60
           MK LG+AQYVLGIQIV+N KN+TLAMSQ SYIDK+L RYKMQNSK GLLPY+YGI LSKE
Sbjct: 302 MKYLGNAQYVLGIQIVRNEKNKTLAMSQTSYIDKMLSRYKMQNSKKGLLPYRYGIDLSKE 361

Query: 61  QCFKTPQEVGDMRKIPYASTVGSLMYAMLCTRPDICFSVGMVSRYQSNPGHDHWTTVKNI 120
           QC KTPQEV DM  IPYAS +GSLMYAMLCTRPDIC+SVG+VSRYQSNP  DHWT VKNI
Sbjct: 362 QCPKTPQEVEDMSNIPYASAIGSLMYAMLCTRPDICYSVGIVSRYQSNPRRDHWTAVKNI 421

Query: 121 LKYLRRTKDYMLVYGTKDLILTRYIDSDFQMDKDARKSTSGSVFTLNGEAVVWRSRKQSF 180
           LKY RRTKDYMLVYG+KDLILT Y DSDFQ DKDARKST GSVFTLNG AVVWRS KQS 
Sbjct: 422 LKYHRRTKDYMLVYGSKDLILTGYTDSDFQTDKDARKSTLGSVFTLNGAAVVWRSIKQSC 481

Query: 181 IADSIMEAEYVAACEAAKEAVWLRKFLTDLEIVPNMHLPITLYCDNSGAVANS 234
           IADS MEA YVAACEA+KEAVWL+KFLTDLE+VPNMHLPITLYCDNSGAVANS
Sbjct: 482 IADSTMEAGYVAACEASKEAVWLKKFLTDLEVVPNMHLPITLYCDNSGAVANS 534

[Close]

BLAST of Cmc08g0222961 vs. NCBI nr
Match: KAA0025945.1 (gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0035786.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0040492.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0041262.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 397.1 bits (1019), Expect = 1.0e-106
Identity = 192/233 (82.40%), Postives = 214/233 (91.85%), Query Frame = 0


Query: 1    MKDLGDAQYVLGIQIVQNRKNRTLAMSQASYIDKILLRYKMQNSKNGLLPYKYGIHLSKE 60
            MKDLG+AQYVLGIQI+++RKN+TLA+SQA+YIDK+L+RY MQNSK GLLP+++G+HLSKE
Sbjct: 936  MKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKLLVRYSMQNSKKGLLPFRHGVHLSKE 995

Query: 61   QCFKTPQEVGDMRKIPYASTVGSLMYAMLCTRPDICFSVGMVSRYQSNPGHDHWTTVKNI 120
            Q  KTPQEV DMR+IPYAS VGSLMYAMLCTRPDIC++VG+VSRYQSNPG DHWT VK +
Sbjct: 996  QSPKTPQEVEDMRRIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTAVKIV 1055

Query: 121  LKYLRRTKDYMLVYGTKDLILTRYIDSDFQMDKDARKSTSGSVFTLNGEAVVWRSRKQSF 180
            LKYLRRT+DYMLVYG KDLILT Y DSDFQ DKD+RKSTSGSVFTLNG AVVWRS KQ  
Sbjct: 1056 LKYLRRTRDYMLVYGAKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQGC 1115

Query: 181  IADSIMEAEYVAACEAAKEAVWLRKFLTDLEIVPNMHLPITLYCDNSGAVANS 234
            IADS MEAEYVAACEAAKEAVWLRKFL DLE+VPNM+LPITLYCDNSGAVANS
Sbjct: 1116 IADSTMEAEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANS 1168

[Close]

BLAST of Cmc08g0222961 vs. NCBI nr
Match: KAA0059226.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 397.1 bits (1019), Expect = 1.0e-106
Identity = 192/233 (82.40%), Postives = 214/233 (91.85%), Query Frame = 0


Query: 1    MKDLGDAQYVLGIQIVQNRKNRTLAMSQASYIDKILLRYKMQNSKNGLLPYKYGIHLSKE 60
            MKDLG+AQYVLGIQI+++RKN+TLA+SQA+YIDK+L+RY MQNSK GLLP+++G+HLSKE
Sbjct: 810  MKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKLLVRYSMQNSKKGLLPFRHGVHLSKE 869

Query: 61   QCFKTPQEVGDMRKIPYASTVGSLMYAMLCTRPDICFSVGMVSRYQSNPGHDHWTTVKNI 120
            Q  KTPQEV DMR+IPYAS VGSLMYAMLCTRPDIC++VG+VSRYQSNPG DHWT VK +
Sbjct: 870  QSPKTPQEVEDMRRIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTAVKIV 929

Query: 121  LKYLRRTKDYMLVYGTKDLILTRYIDSDFQMDKDARKSTSGSVFTLNGEAVVWRSRKQSF 180
            LKYLRRT+DYMLVYG KDLILT Y DSDFQ DKD+RKSTSGSVFTLNG AVVWRS KQ  
Sbjct: 930  LKYLRRTRDYMLVYGAKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQGC 989

Query: 181  IADSIMEAEYVAACEAAKEAVWLRKFLTDLEIVPNMHLPITLYCDNSGAVANS 234
            IADS MEAEYVAACEAAKEAVWLRKFL DLE+VPNM+LPITLYCDNSGAVANS
Sbjct: 990  IADSTMEAEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANS 1042

[Close]

BLAST of Cmc08g0222961 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 2.5e-55
Identity = 109/230 (47.39%), Postives = 154/230 (66.96%), Query Frame = 0


Query: 1    MKDLGDAQYVLGIQIVQNRKNRTLAMSQASYIDKILLRYKMQNSKNGLLPYKYGIHLSKE 60
            MKDLG AQ +LG++IV+ R +R L +SQ  YI+++L R+ M+N+K    P    + LSK+
Sbjct: 1035 MKDLGPAQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKK 1094

Query: 61   QCFKTPQEVGDMRKIPYASTVGSLMYAMLCTRPDICFSVGMVSRYQSNPGHDHWTTVKNI 120
             C  T +E G+M K+PY+S VGSLMYAM+CTRPDI  +VG+VSR+  NPG +HW  VK I
Sbjct: 1095 MCPTTVEEKGNMAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWI 1154

Query: 121  LKYLRRTKDYMLVYGTKDLILTRYIDSDFQMDKDARKSTSGSVFTLNGEAVVWRSRKQSF 180
            L+YLR T    L +G  D IL  Y D+D   D D RKS++G +FT +G A+ W+S+ Q  
Sbjct: 1155 LRYLRGTTGDCLCFGGSDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKC 1214

Query: 181  IADSIMEAEYVAACEAAKEAVWLRKFLTDLEIVPNMHLPITLYCDNSGAV 231
            +A S  EAEY+AA E  KE +WL++FL +L +    ++   +YCD+  A+
Sbjct: 1215 VALSTTEAEYIAATETGKEMIWLKRFLQELGLHQKEYV---VYCDSQSAI 1261

[Close]

BLAST of Cmc08g0222961 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 133.3 bits (334), Expect = 3.6e-30
Identity = 83/240 (34.58%), Postives = 135/240 (56.25%), Query Frame = 0


Query: 1    MKDLGDAQYVLGIQIVQNRKNRTLAMSQASYIDKILLRYKMQ--NSKNGLLPYKYGIHL- 60
            M DL + ++ +GI+I    +   + +SQ++Y+ KIL ++ M+  N+ +  LP K    L 
Sbjct: 1114 MTDLNEIKHFIGIRI--EMQEDKIYLSQSAYVKKILSKFNMENCNAVSTPLPSKINYELL 1173

Query: 61   -SKEQCFKTPQEVGDMRKIPYASTVGSLMYAMLCTRPDICFSVGMVSRYQSNPGHDHWTT 120
             S E C             P  S +G LMY MLCTRPD+  +V ++SRY S    + W  
Sbjct: 1174 NSDEDC-----------NTPCRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQN 1233

Query: 121  VKNILKYLRRTKDYMLVYGTKDLI----LTRYIDSDFQMDKDARKSTSGSVFTL-NGEAV 180
            +K +L+YL+ T D  L++  K+L     +  Y+DSD+   +  RKST+G +F + +   +
Sbjct: 1234 LKRVLRYLKGTIDMKLIF-KKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLI 1293

Query: 181  VWRSRKQSFIADSIMEAEYVAACEAAKEAVWLRKFLTDLEIVPNMHLPITLYCDNSGAVA 232
             W +++Q+ +A S  EAEY+A  EA +EA+WL+  LT + I   +  PI +Y DN G ++
Sbjct: 1294 CWNTKRQNSVAASSTEAEYMALFEAVREALWLKFLLTSINI--KLENPIKIYEDNQGCIS 1337

[Close]

BLAST of Cmc08g0222961 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 4.9e-27
Identity = 62/135 (45.93%), Postives = 91/135 (67.41%), Query Frame = 0


Query: 72  MRKIPYASTVGSLMYAMLCTRPDICFSVGMVSRYQSNPGHDHWTTVKNILKYLRRTKDYM 131
           M+ +PY S VG++MY M+ TRPD+  +VG++S++ S+P   HW  +K +L+YL+ T+ Y 
Sbjct: 1   MKNVPYLSAVGAIMYLMVVTRPDLAAAVGVLSQFASDPCPTHWQALKRVLRYLQSTQTYG 60

Query: 132 LVY---GTKDLILTRYIDSDFQMDKDARKSTSGSVFTLNGEAVVWRSRKQSFIADSIMEA 191
           L +   GT  L+   Y D+D+  D ++R+STSG +F LNG  V WRS+KQ  +A S  E 
Sbjct: 61  LEFTRAGTAKLV--GYSDADWAGDVESRRSTSGYLFKLNGGCVSWRSKKQRTVALSSTED 120

Query: 192 EYVAACEAAKEAVWL 204
           EY+A  EA +EAVWL
Sbjct: 121 EYMALSEATQEAVWL 133

[Close]

BLAST of Cmc08g0222961 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 3.3e-23
Identity = 75/230 (32.61%), Postives = 108/230 (46.96%), Query Frame = 0


Query: 1    MKDLGDAQYVLGIQIVQNRKNRTLAMSQASYIDKILLRYKMQNSKNGLLPYKYGIHLSKE 60
            +K+  D  Y LGI+    R  + L +SQ  Y   +L R  M  +K    P      L+  
Sbjct: 1160 VKEHEDLHYFLGIE--AKRVPQGLHLSQRRYTLDLLARTNMLTAKPVATPMATSPKLTLH 1219

Query: 61   QCFKTPQEVGDMRKIPYASTVGSLMYAMLCTRPDICFSVGMVSRYQSNPGHDHWTTVKNI 120
               K P          Y   VGSL Y +  TRPD+ ++V  +S+Y   P  DHW  +K +
Sbjct: 1220 SGTKLPDPT------EYRGIVGSLQY-LAFTRPDLSYAVNRLSQYMHMPTDDHWNALKRV 1279

Query: 121  LKYLRRTKDY-MLVYGTKDLILTRYIDSDFQMDKDARKSTSGSVFTLNGEAVVWRSRKQS 180
            L+YL  T D+ + +     L L  Y D+D+  D D   ST+G +  L    + W S+KQ 
Sbjct: 1280 LRYLAGTPDHGIFLKKGNTLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQK 1339

Query: 181  FIADSIMEAEYVAACEAAKEAVWLRKFLTDLEIVPNMHLPITLYCDNSGA 230
             +  S  EAEY +    + E  W+   LT+L I   +  P  +YCDN GA
Sbjct: 1340 GVVRSSTEAEYRSVANTSSELQWICSLLTELGI--QLSHPPVIYCDNVGA 1378

[Close]

BLAST of Cmc08g0222961 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.5e-20
Identity = 75/230 (32.61%), Postives = 107/230 (46.52%), Query Frame = 0


Query: 1    MKDLGDAQYVLGIQIVQNRKNRTLAMSQASYIDKILLRYKMQNSKNGLLPYKYGIHLSKE 60
            +KD  +  Y LGI+    R    L +SQ  YI  +L R  M  +K    P      LS  
Sbjct: 1177 VKDHEELHYFLGIE--AKRVPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPSPKLSLY 1236

Query: 61   QCFKTPQEVGDMRKIPYASTVGSLMYAMLCTRPDICFSVGMVSRYQSNPGHDHWTTVKNI 120
               K            Y   VGSL Y +  TRPDI ++V  +S++   P  +H   +K I
Sbjct: 1237 SGTKLTDPT------EYRGIVGSLQY-LAFTRPDISYAVNRLSQFMHMPTEEHLQALKRI 1296

Query: 121  LKYLRRTKDY-MLVYGTKDLILTRYIDSDFQMDKDARKSTSGSVFTLNGEAVVWRSRKQS 180
            L+YL  T ++ + +     L L  Y D+D+  DKD   ST+G +  L    + W S+KQ 
Sbjct: 1297 LRYLAGTPNHGIFLKKGNTLSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQK 1356

Query: 181  FIADSIMEAEYVAACEAAKEAVWLRKFLTDLEIVPNMHLPITLYCDNSGA 230
             +  S  EAEY +    + E  W+   LT+L I   +  P  +YCDN GA
Sbjct: 1357 GVVRSSTEAEYRSVANTSSEMQWICSLLTELGI--RLTRPPVIYCDNVGA 1395

[Close]

BLAST of Cmc08g0222961 vs. ExPASy TrEMBL
Match: E2GK51 (Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1)

HSP 1 Score: 413.7 bits (1062), Expect = 5.1e-112
Identity = 201/233 (86.27%), Postives = 216/233 (92.70%), Query Frame = 0


Query: 1    MKDLGDAQYVLGIQIVQNRKNRTLAMSQASYIDKILLRYKMQNSKNGLLPYKYGIHLSKE 60
            MKDLG+AQY+LGIQIV+NRKN+TLAMSQASYIDK+L RYKMQNSK G LP+++GIHLSKE
Sbjct: 1028 MKDLGEAQYILGIQIVRNRKNKTLAMSQASYIDKVLSRYKMQNSKKGQLPFRHGIHLSKE 1087

Query: 61   QCFKTPQEVGDMRKIPYASTVGSLMYAMLCTRPDICFSVGMVSRYQSNPGHDHWTTVKNI 120
            QC KTPQEV DMR IPY+S VGSLMYAMLCTRPDIC+SVG+VSRYQSNPG DHWT VKNI
Sbjct: 1088 QCPKTPQEVEDMRNIPYSSAVGSLMYAMLCTRPDICYSVGIVSRYQSNPGRDHWTAVKNI 1147

Query: 121  LKYLRRTKDYMLVYGTKDLILTRYIDSDFQMDKDARKSTSGSVFTLNGEAVVWRSRKQSF 180
            LKYLRRT++YMLVYG KDLILT Y DSDFQ DKDARKSTSGSVFTLNG AVVWRS KQ+ 
Sbjct: 1148 LKYLRRTRNYMLVYGAKDLILTGYTDSDFQSDKDARKSTSGSVFTLNGGAVVWRSVKQTC 1207

Query: 181  IADSIMEAEYVAACEAAKEAVWLRKFLTDLEIVPNMHLPITLYCDNSGAVANS 234
            IADS MEAEYVAACEAAKEAVWLRKFLTDLE+VPNMHLPITLYCDNSGAVANS
Sbjct: 1208 IADSTMEAEYVAACEAAKEAVWLRKFLTDLEVVPNMHLPITLYCDNSGAVANS 1260

[Close]

BLAST of Cmc08g0222961 vs. ExPASy TrEMBL
Match: A0A5A7U945 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold207G001000 PE=3 SV=1)

HSP 1 Score: 407.9 bits (1047), Expect = 2.8e-110
Identity = 200/233 (85.84%), Postives = 213/233 (91.42%), Query Frame = 0


Query: 1   MKDLGDAQYVLGIQIVQNRKNRTLAMSQASYIDKILLRYKMQNSKNGLLPYKYGIHLSKE 60
           MKDL +AQYVLGI+IV+NRKN+TLAMSQ SYIDK+L RYKMQNSK  LLPY+YGIHLSKE
Sbjct: 331 MKDLENAQYVLGIEIVRNRKNKTLAMSQTSYIDKMLSRYKMQNSKKSLLPYRYGIHLSKE 390

Query: 61  QCFKTPQEVGDMRKIPYASTVGSLMYAMLCTRPDICFSVGMVSRYQSNPGHDHWTTVKNI 120
           QC KTPQEV DM  IPYAS VGSLMYAMLCTRPDIC+SVG+VSRYQSNPG DHWT VKNI
Sbjct: 391 QCPKTPQEVKDMSNIPYASAVGSLMYAMLCTRPDICYSVGIVSRYQSNPGSDHWTAVKNI 450

Query: 121 LKYLRRTKDYMLVYGTKDLILTRYIDSDFQMDKDARKSTSGSVFTLNGEAVVWRSRKQSF 180
           LKYLRRTKDYMLVYG+KDLILTRY DSDFQ DKD RKSTS SVFTLNGEAVVW+  KQS 
Sbjct: 451 LKYLRRTKDYMLVYGSKDLILTRYTDSDFQSDKDVRKSTSESVFTLNGEAVVWKRIKQSC 510

Query: 181 IADSIMEAEYVAACEAAKEAVWLRKFLTDLEIVPNMHLPITLYCDNSGAVANS 234
           IADS MEAEYVA+CEAAKEAVWL+KFLTDLEIVPN+HLPITLYCDNSGAVANS
Sbjct: 511 IADSTMEAEYVASCEAAKEAVWLKKFLTDLEIVPNIHLPITLYCDNSGAVANS 563

[Close]

BLAST of Cmc08g0222961 vs. ExPASy TrEMBL
Match: A0A5A7TV73 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold216G00520 PE=4 SV=1)

HSP 1 Score: 398.7 bits (1023), Expect = 1.7e-107
Identity = 197/233 (84.55%), Postives = 209/233 (89.70%), Query Frame = 0


Query: 1   MKDLGDAQYVLGIQIVQNRKNRTLAMSQASYIDKILLRYKMQNSKNGLLPYKYGIHLSKE 60
           MK LG+AQYVLGIQIV+N KN+TLAMSQ SYIDK+L RYKMQNSK GLLPY+YGI LSKE
Sbjct: 302 MKYLGNAQYVLGIQIVRNEKNKTLAMSQTSYIDKMLSRYKMQNSKKGLLPYRYGIDLSKE 361

Query: 61  QCFKTPQEVGDMRKIPYASTVGSLMYAMLCTRPDICFSVGMVSRYQSNPGHDHWTTVKNI 120
           QC KTPQEV DM  IPYAS +GSLMYAMLCTRPDIC+SVG+VSRYQSNP  DHWT VKNI
Sbjct: 362 QCPKTPQEVEDMSNIPYASAIGSLMYAMLCTRPDICYSVGIVSRYQSNPRRDHWTAVKNI 421

Query: 121 LKYLRRTKDYMLVYGTKDLILTRYIDSDFQMDKDARKSTSGSVFTLNGEAVVWRSRKQSF 180
           LKY RRTKDYMLVYG+KDLILT Y DSDFQ DKDARKST GSVFTLNG AVVWRS KQS 
Sbjct: 422 LKYHRRTKDYMLVYGSKDLILTGYTDSDFQTDKDARKSTLGSVFTLNGAAVVWRSIKQSC 481

Query: 181 IADSIMEAEYVAACEAAKEAVWLRKFLTDLEIVPNMHLPITLYCDNSGAVANS 234
           IADS MEA YVAACEA+KEAVWL+KFLTDLE+VPNMHLPITLYCDNSGAVANS
Sbjct: 482 IADSTMEAGYVAACEASKEAVWLKKFLTDLEVVPNMHLPITLYCDNSGAVANS 534

[Close]

BLAST of Cmc08g0222961 vs. ExPASy TrEMBL
Match: A0A5A7TZD0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00090 PE=4 SV=1)

HSP 1 Score: 397.1 bits (1019), Expect = 5.0e-107
Identity = 192/233 (82.40%), Postives = 214/233 (91.85%), Query Frame = 0


Query: 1    MKDLGDAQYVLGIQIVQNRKNRTLAMSQASYIDKILLRYKMQNSKNGLLPYKYGIHLSKE 60
            MKDLG+AQYVLGIQI+++RKN+TLA+SQA+YIDK+L+RY MQNSK GLLP+++G+HLSKE
Sbjct: 936  MKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKLLVRYSMQNSKKGLLPFRHGVHLSKE 995

Query: 61   QCFKTPQEVGDMRKIPYASTVGSLMYAMLCTRPDICFSVGMVSRYQSNPGHDHWTTVKNI 120
            Q  KTPQEV DMR+IPYAS VGSLMYAMLCTRPDIC++VG+VSRYQSNPG DHWT VK +
Sbjct: 996  QSPKTPQEVEDMRRIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTAVKIV 1055

Query: 121  LKYLRRTKDYMLVYGTKDLILTRYIDSDFQMDKDARKSTSGSVFTLNGEAVVWRSRKQSF 180
            LKYLRRT+DYMLVYG KDLILT Y DSDFQ DKD+RKSTSGSVFTLNG AVVWRS KQ  
Sbjct: 1056 LKYLRRTRDYMLVYGAKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQGC 1115

Query: 181  IADSIMEAEYVAACEAAKEAVWLRKFLTDLEIVPNMHLPITLYCDNSGAVANS 234
            IADS MEAEYVAACEAAKEAVWLRKFL DLE+VPNM+LPITLYCDNSGAVANS
Sbjct: 1116 IADSTMEAEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANS 1168

[Close]

BLAST of Cmc08g0222961 vs. ExPASy TrEMBL
Match: A0A5A7UYE8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G001570 PE=4 SV=1)

HSP 1 Score: 397.1 bits (1019), Expect = 5.0e-107
Identity = 192/233 (82.40%), Postives = 214/233 (91.85%), Query Frame = 0


Query: 1    MKDLGDAQYVLGIQIVQNRKNRTLAMSQASYIDKILLRYKMQNSKNGLLPYKYGIHLSKE 60
            MKDLG+AQYVLGIQI+++RKN+TLA+SQA+YIDK+L+RY MQNSK GLLP+++G+HLSKE
Sbjct: 810  MKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKLLVRYSMQNSKKGLLPFRHGVHLSKE 869

Query: 61   QCFKTPQEVGDMRKIPYASTVGSLMYAMLCTRPDICFSVGMVSRYQSNPGHDHWTTVKNI 120
            Q  KTPQEV DMR+IPYAS VGSLMYAMLCTRPDIC++VG+VSRYQSNPG DHWT VK +
Sbjct: 870  QSPKTPQEVEDMRRIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTAVKIV 929

Query: 121  LKYLRRTKDYMLVYGTKDLILTRYIDSDFQMDKDARKSTSGSVFTLNGEAVVWRSRKQSF 180
            LKYLRRT+DYMLVYG KDLILT Y DSDFQ DKD+RKSTSGSVFTLNG AVVWRS KQ  
Sbjct: 930  LKYLRRTRDYMLVYGAKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQGC 989

Query: 181  IADSIMEAEYVAACEAAKEAVWLRKFLTDLEIVPNMHLPITLYCDNSGAVANS 234
            IADS MEAEYVAACEAAKEAVWLRKFL DLE+VPNM+LPITLYCDNSGAVANS
Sbjct: 990  IADSTMEAEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANS 1042

[Close]

BLAST of Cmc08g0222961 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 100.5 bits (249), Expect = 1.9e-21
Identity = 70/232 (30.17%), Postives = 112/232 (48.28%), Query Frame = 0


Query: 1   MKDLGDAQYVLGIQIVQNRKNRTLAMSQASYIDKILLRYKMQNSKNGLLPYK-YGIHLSK 60
           ++DLG  +Y LG++I   R    + + Q  Y   +L        + GLL  K   + +  
Sbjct: 310 LRDLGPLKYFLGLEIA--RSAAGINICQRKYALDLL-------DETGLLGCKPSSVPMDP 369

Query: 61  EQCFKTPQEVGDMRKIPYASTVGSLMYAMLCTRPDICFSVGMVSRYQSNPGHDHWTTVKN 120
              F        +    Y   +G LMY  + TR DI F+V  +S++   P   H   V  
Sbjct: 370 SVTFSAHSGGDFVDAKAYRRLIGRLMYLQI-TRLDISFAVNKLSQFSEAPRLAHQQAVMK 429

Query: 121 ILKYLRRTKDYMLVYGTK-DLILTRYIDSDFQMDKDARKSTSGSVFTLNGEAVVWRSRKQ 180
           IL Y++ T    L Y ++ ++ L  + D+ FQ  KD R+ST+G    L    + W+S+KQ
Sbjct: 430 ILHYIKGTVGQGLFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQ 489

Query: 181 SFIADSIMEAEYVAACEAAKEAVWLRKFLTDLEIVPNMHLPITLYCDNSGAV 231
             ++ S  EAEY A   A  E +WL +F  +L++   +  P  L+CDN+ A+
Sbjct: 490 QVVSKSSAEAEYRALSFATDEMMWLAQFFRELQL--PLSKPTLLFCDNTAAI 529

[Close]

BLAST of Cmc08g0222961 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 78.2 bits (191), Expect = 9.8e-15
Identity = 61/205 (29.76%), Postives = 98/205 (47.80%), Query Frame = 0


Query: 1   MKDLGDAQYVLGIQIVQNRKNRTLAMSQASYIDKILLRYKMQNSK--NGLLPYKYGIHLS 60
           MKDLG   Y LGIQI  +     L +SQ  Y ++IL    M + K  +  LP K    +S
Sbjct: 33  MKDLGPVHYFLGIQIKTHPSG--LFLSQTKYAEQILNNAGMLDCKPMSTPLPLKLNSSVS 92

Query: 61  KEQCFKTPQEVGDMRKIPYASTVGSLMYAMLCTRPDICFSVGMVSRYQSNPGHDHWTTVK 120
             + +  P +        + S VG+L Y  L TRPDI ++V +V +    P    +  +K
Sbjct: 93  TAK-YPDPSD--------FRSIVGALQYLTL-TRPDISYAVNIVCQRMHEPTLADFDLLK 152

Query: 121 NILKYLRRTKDY-MLVYGTKDLILTRYIDSDFQMDKDARKSTSGSVFTLNGEAVVWRSRK 180
            +L+Y++ T  + + ++    L +  + DSD+      R+ST+G    L    + W +++
Sbjct: 153 RVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKR 212

Query: 181 QSFIADSIMEAEYVAACEAAKEAVW 203
           Q  ++ S  E EY A    A E  W
Sbjct: 213 QPTVSRSSTETEYRALALTAAELTW 225

The following BLAST results are available for this feature:

BLAST of Cmc08g0222961 vs. NCBI nr


Match Name	E-value	Identity	Description
ADJ18449.1	1.1e-111	86.27	gag/pol protein, partial [Bryonia dioica]	[more]
KAA0052272.1	5.8e-110	85.84	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0046768.1	3.5e-107	84.55	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0025945.1	1.0e-106	82.40	gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumi...	[more]
KAA0059226.1	1.0e-106	82.40	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc08g0222961 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	2.5e-55	47.39	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	3.6e-30	34.58	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P0CV72	4.9e-27	45.93	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]
Q9ZT94	3.3e-23	32.61	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	1.5e-20	32.61	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]

BLAST of Cmc08g0222961 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
E2GK51	5.1e-112	86.27	Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1	[more]
A0A5A7U945	2.8e-110	85.84	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold207G0010...	[more]
A0A5A7TV73	1.7e-107	84.55	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold216G0052...	[more]
A0A5A7TZD0	5.0e-107	82.40	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G000...	[more]
A0A5A7UYE8	5.0e-107	82.40	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G0015...	[more]

BLAST of Cmc08g0222961 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	1.9e-21	30.17	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	9.8e-15	29.76	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 149..229
None	No IPR available	PANTHER	PTHR11439:SF273	RIBOSOME BIOGENESIS PROTEIN BOP1 HOMOLOG	coord: 149..229
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 144..233 e-value: 9.41001E-39 score: 129.51

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0222961.1	Cmc08g0222961.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding