Cmc08g0222841 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0222841
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Integrase catalytic domain-containing protein
Location	CMiso1.1chr08: 11930981 .. 11931934 (+)
RNA-Seq Expression	Cmc08g0222841
Synteny	Cmc08g0222841

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAATGATTGGATTGCTGATTCAAGATGTTCTAACCATACGACAAGAGATAAGAGGAAGCCGAGTTGTTGTAATTGCAAACAACTCGAAGTTGCCAATAGCTCAGGTTGGTAAAACTATGATAGTGCCTTGTTCTAATTCTAATCAAGTGGAATTAGATCATGTATTTTATGTTCCTGGAATGAAGAAGAATTTGATGTCAGTATCTCAATTGACTTCAGCAGACAACTTCGTCGTATTTGGACCTGACGATGTAAAGGTGTATCATAATCTTAAAGTAAGTGGTACACCGTTGATGGAAGGACGAAGGATAAAGTCCATCTACGTTATGTCAGTAGAGATCGCCTACGTGAAAAAGACGCAAAAGAATGAAACAGCAGATTTGTGGCATGCAAGACTTGGTCATGTTATCTACAACAAATTAAAGACAATAATAAACAAGTTCATGTTGAAGGGGTTGCCACAACTTGATATCAAAGAAGACATGGTATGTGCTGGTTGCCAGTATGGGAAAGCACATCAACTACCATTTAAGGAGTCCAAATTCAGAGTAAAACAACCATTGGAGTTGGTGCATTCAGATGTATTTGGTCCGGTCAAACAATCTTCAATCGGTGGAATGCGCTACATGGTAACCTTTATCGATGACTTCTCTAGGTATGCTTGGGTGTTTTTTATGAAAGAGAAGTTTGAAACAATTACAAACTTTAAAGAATTCAAAGAACAAGTTGAAAATGAGTTAGAAAAGAGAATTCAATGTTTACGTTCAGATAATAGGGGAGAATATATCTCTAATGAATTCTCTCAATACTTGAAAAAATATAAGATATATCATCAGTTAACGTGTCCAAACACTTCAGAAAAAAATGGACTGGCAGAAAGAAAAAATAGACATCCTGCAAAAGTATATCGTAGTATGTTACATGCAAGTAATGTTTTAGGAAGATTTTAG

mRNA sequence

ATGAAAATGATTGGATTGCTGATTCAAGATGTTCTAACCATACGACAAGAGATAAGAGGAAGCCGAGTTGTTGTAATTGCAAACAACTCGAAGTTGCCAATAGCTCAGGTTGGTAAAACTATGATAGTGCCTTGTTCTAATTCTAATCAAGTGGAATTAGATCATGTATTTTATGTTCCTGGAATGAAGAAGAATTTGATGTCAGTATCTCAATTGACTTCAGCAGACAACTTCGTCGTATTTGGACCTGACGATGTAAAGGTGTATCATAATCTTAAAGTAAGTGGTACACCGTTGATGGAAGGACGAAGGATAAAGTCCATCTACGTTATGTCAGTAGAGATCGCCTACGTGAAAAAGACGCAAAAGAATGAAACAGCAGATTTGTGGCATGCAAGACTTGGTCATGTTATCTACAACAAATTAAAGACAATAATAAACAAGTTCATGTTGAAGGGGTTGCCACAACTTGATATCAAAGAAGACATGGTATGTGCTGGTTGCCAGTATGGGAAAGCACATCAACTACCATTTAAGGAGTCCAAATTCAGAGTAAAACAACCATTGGAGTTGGTGCATTCAGATGTATTTGGTCCGGTCAAACAATCTTCAATCGGTGGAATGCGCTACATGGTAACCTTTATCGATGACTTCTCTAGGTATGCTTGGGTGTTTTTTATGAAAGAGAAGTTTGAAACAATTACAAACTTTAAAGAATTCAAAGAACAAGTTGAAAATGAGTTAGAAAAGAGAATTCAATGTTTACGTTCAGATAATAGGGGAGAATATATCTCTAATGAATTCTCTCAATACTTGAAAAAATATAAGATATATCATCAGTTAACGTGTCCAAACACTTCAGAAAAAAATGGACTGGCAGAAAGAAAAAATAGACATCCTGCAAAAGTATATCGTAGTATGTTACATGCAAGTAATGTTTTAGGAAGATTTTAG

Coding sequence (CDS)

ATGAAAATGATTGGATTGCTGATTCAAGATGTTCTAACCATACGACAAGAGATAAGAGGAAGCCGAGTTGTTGTAATTGCAAACAACTCGAAGTTGCCAATAGCTCAGGTTGGTAAAACTATGATAGTGCCTTGTTCTAATTCTAATCAAGTGGAATTAGATCATGTATTTTATGTTCCTGGAATGAAGAAGAATTTGATGTCAGTATCTCAATTGACTTCAGCAGACAACTTCGTCGTATTTGGACCTGACGATGTAAAGGTGTATCATAATCTTAAAGTAAGTGGTACACCGTTGATGGAAGGACGAAGGATAAAGTCCATCTACGTTATGTCAGTAGAGATCGCCTACGTGAAAAAGACGCAAAAGAATGAAACAGCAGATTTGTGGCATGCAAGACTTGGTCATGTTATCTACAACAAATTAAAGACAATAATAAACAAGTTCATGTTGAAGGGGTTGCCACAACTTGATATCAAAGAAGACATGGTATGTGCTGGTTGCCAGTATGGGAAAGCACATCAACTACCATTTAAGGAGTCCAAATTCAGAGTAAAACAACCATTGGAGTTGGTGCATTCAGATGTATTTGGTCCGGTCAAACAATCTTCAATCGGTGGAATGCGCTACATGGTAACCTTTATCGATGACTTCTCTAGGTATGCTTGGGTGTTTTTTATGAAAGAGAAGTTTGAAACAATTACAAACTTTAAAGAATTCAAAGAACAAGTTGAAAATGAGTTAGAAAAGAGAATTCAATGTTTACGTTCAGATAATAGGGGAGAATATATCTCTAATGAATTCTCTCAATACTTGAAAAAATATAAGATATATCATCAGTTAACGTGTCCAAACACTTCAGAAAAAAATGGACTGGCAGAAAGAAAAAATAGACATCCTGCAAAAGTATATCGTAGTATGTTACATGCAAGTAATGTTTTAGGAAGATTTTAG

Protein sequence

MKMIGLLIQDVLTIRQEIRGSRVVVIANNSKLPIAQVGKTMIVPCSNSNQVELDHVFYVPGMKKNLMSVSQLTSADNFVVFGPDDVKVYHNLKVSGTPLMEGRRIKSIYVMSVEIAYVKKTQKNETADLWHARLGHVIYNKLKTIINKFMLKGLPQLDIKEDMVCAGCQYGKAHQLPFKESKFRVKQPLELVHSDVFGPVKQSSIGGMRYMVTFIDDFSRYAWVFFMKEKFETITNFKEFKEQVENELEKRIQCLRSDNRGEYISNEFSQYLKKYKIYHQLTCPNTSEKNGLAERKNRHPAKVYRSMLHASNVLGRF

Homology

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BLAST of Cmc08g0222841 vs. NCBI nr
Match: TYK27792.1 (Integrase, catalytic core [Cucumis melo var. makuwa])

HSP 1 Score: 438.0 bits (1125), Expect = 7.1e-119
Identity = 222/237 (93.67%), Postives = 225/237 (94.94%), Query Frame = 0


Query: 3   MIGLLIQDVLTIRQEIRGSRVVVIANNSKLPIAQVGKTMIVPCSNSNQVELDHVFYVPGM 62
           MIGLLIQDVLTIRQEIRGSRVVVIANNSKLPIAQVGKTMIVPCSNSNQVELDHVFYVPGM
Sbjct: 1   MIGLLIQDVLTIRQEIRGSRVVVIANNSKLPIAQVGKTMIVPCSNSNQVELDHVFYVPGM 60

Query: 63  KKNLMSVSQLTSADNFVVFGPDDVKVYHNLKVSGTPLMEGRRIKSIYVMSVEIAYVKKTQ 122
           KKNLMSVSQLTSADNFVVFGPDDVKVYHNLKVSGTPLMEGRRIKSIYVMSVEIAYVKKTQ
Sbjct: 61  KKNLMSVSQLTSADNFVVFGPDDVKVYHNLKVSGTPLMEGRRIKSIYVMSVEIAYVKKTQ 120

Query: 123 KNETADLWHARLGHVIYNKLKTIINKFMLKGLPQLDIKEDMVCAGCQYGKAHQLPFKESK 182
           KNETADLWHARLGHVIYNKLKTIINKFMLKGLPQLDIKEDMVCAGCQYGKAHQLPFKESK
Sbjct: 121 KNETADLWHARLGHVIYNKLKTIINKFMLKGLPQLDIKEDMVCAGCQYGKAHQLPFKESK 180

Query: 183 FRVKQPLELVHSDVFGPVKQSSIGGMRYMVTFIDDFSRYAWV-FFMKEKFETITNFK 239
           FRVKQPLELVHSDVFGPVKQSSIGGMRYMVTFIDDFSR        K ++E + N K
Sbjct: 181 FRVKQPLELVHSDVFGPVKQSSIGGMRYMVTFIDDFSRLPQQRLEFKSRYEKLLNIK 237

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BLAST of Cmc08g0222841 vs. NCBI nr
Match: KAE8705435.1 (hypothetical protein F3Y22_tig00110429pilonHSYRG01243 [Hibiscus syriacus])

HSP 1 Score: 433.3 bits (1113), Expect = 1.8e-117
Identity = 203/301 (67.44%), Postives = 250/301 (83.06%), Query Frame = 0


Query: 17  EIRGSRVVVIANNSKLPIAQVGKTMIVPCSNSNQVELDHVFYVPGMKKNLMSVSQLTSAD 76
           E  G RVVV A+NS+LPI  +GKT++ P  N+NQV+L  V++VPGMKKNL+SV+QLTS+ 
Sbjct: 348 EYNGGRVVVTADNSRLPITHIGKTIVTPRYNTNQVQLQDVYHVPGMKKNLLSVAQLTSSG 407

Query: 77  NFVVFGPDDVKVYHNLKVSGTPLMEGRRIKSIYVMSVEIAYVKKTQKNETADLWHARLGH 136
           ++V+FGP DVKVY ++K++ TP MEGRR++SIYVMS E AYV +T+KNET+DLWH RLGH
Sbjct: 408 HYVLFGPQDVKVYRDVKITETPTMEGRRLESIYVMSAESAYVDRTRKNETSDLWHMRLGH 467

Query: 137 VIYNKLKTIINKFMLKGLPQLDIKEDMVCAGCQYGKAHQLPFKESKFRVKQPLELVHSDV 196
           V Y+KL  ++ K MLKGLPQLD++ D VCAGCQYGKAHQLP+ ESKF+ K+PLELVHSDV
Sbjct: 468 VSYSKLSVMVKKSMLKGLPQLDVRTDTVCAGCQYGKAHQLPYDESKFKAKEPLELVHSDV 527

Query: 197 FGPVKQSSIGGMRYMVTFIDDFSRYAWVFFMKEKFETITNFKEFKEQVENELEKRIQCLR 256
           FGPVKQ SI GMRYMVTFIDDFSRY WVFFMKEK +T + FKEF++  E E+ K+I CLR
Sbjct: 528 FGPVKQQSISGMRYMVTFIDDFSRYVWVFFMKEKSDTFSKFKEFRDSAEGEVGKKICCLR 587

Query: 257 SDNRGEYISNEFSQYLKKYKIYHQLTCPNTSEKNGLAERKNRHPAKVYRSMLHASNVLGR 316
           +DN GEY SNEFSQYL++ +I HQ TC NT ++NG+AERKNRH A++ RSMLHA NV GR
Sbjct: 588 TDNGGEYRSNEFSQYLRECRIRHQYTCANTPQQNGVAERKNRHLAEICRSMLHAKNVSGR 647

Query: 317 F 318
           F
Sbjct: 648 F 648

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BLAST of Cmc08g0222841 vs. NCBI nr
Match: KAE8687058.1 (hypothetical protein F3Y22_tig00111024pilonHSYRG00006 [Hibiscus syriacus])

HSP 1 Score: 433.3 bits (1113), Expect = 1.8e-117
Identity = 203/301 (67.44%), Postives = 250/301 (83.06%), Query Frame = 0


Query: 17  EIRGSRVVVIANNSKLPIAQVGKTMIVPCSNSNQVELDHVFYVPGMKKNLMSVSQLTSAD 76
           E  G RVVV A+NS+LPI  +GKT++ P  N+NQV+L  V++VPGMKKNL+SV+QLTS+ 
Sbjct: 247 EYNGGRVVVTADNSRLPITHIGKTIVTPRYNTNQVQLQDVYHVPGMKKNLLSVAQLTSSG 306

Query: 77  NFVVFGPDDVKVYHNLKVSGTPLMEGRRIKSIYVMSVEIAYVKKTQKNETADLWHARLGH 136
           ++V+FGP DVKVY ++K++ TP MEGRR++SIYVMS E AYV +T+KNET+DLWH RLGH
Sbjct: 307 HYVLFGPQDVKVYRDVKITETPTMEGRRLESIYVMSAESAYVDRTRKNETSDLWHMRLGH 366

Query: 137 VIYNKLKTIINKFMLKGLPQLDIKEDMVCAGCQYGKAHQLPFKESKFRVKQPLELVHSDV 196
           V Y+KL  ++ K MLKGLPQLD++ D VCAGCQYGKAHQLP+ ESKF+ K+PLELVHSDV
Sbjct: 367 VSYSKLSVMVKKSMLKGLPQLDVRTDTVCAGCQYGKAHQLPYDESKFKAKEPLELVHSDV 426

Query: 197 FGPVKQSSIGGMRYMVTFIDDFSRYAWVFFMKEKFETITNFKEFKEQVENELEKRIQCLR 256
           FGPVKQ SI GMRYMVTFIDDFSRY WVFFMKEK +T + FKEF++  E E+ K+I CLR
Sbjct: 427 FGPVKQQSISGMRYMVTFIDDFSRYVWVFFMKEKSDTFSKFKEFRDSAEGEVGKKICCLR 486

Query: 257 SDNRGEYISNEFSQYLKKYKIYHQLTCPNTSEKNGLAERKNRHPAKVYRSMLHASNVLGR 316
           +DN GEY SNEFSQYL++ +I HQ TC NT ++NG+AERKNRH A++ RSMLHA NV GR
Sbjct: 487 TDNGGEYRSNEFSQYLRECRIRHQYTCANTPQQNGVAERKNRHLAEICRSMLHAKNVSGR 546

Query: 317 F 318
           F
Sbjct: 547 F 547

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BLAST of Cmc08g0222841 vs. NCBI nr
Match: KAE8715296.1 (hypothetical protein F3Y22_tig00110183pilonHSYRG00102 [Hibiscus syriacus])

HSP 1 Score: 433.3 bits (1113), Expect = 1.8e-117
Identity = 203/301 (67.44%), Postives = 250/301 (83.06%), Query Frame = 0


Query: 17  EIRGSRVVVIANNSKLPIAQVGKTMIVPCSNSNQVELDHVFYVPGMKKNLMSVSQLTSAD 76
           E  G RVVV A+NS+LPI  +GKT++ P  N+NQV+L  V++VPGMKKNL+SV+QLTS+ 
Sbjct: 348 EYNGGRVVVTADNSRLPITHIGKTIVTPRYNTNQVQLQDVYHVPGMKKNLLSVAQLTSSG 407

Query: 77  NFVVFGPDDVKVYHNLKVSGTPLMEGRRIKSIYVMSVEIAYVKKTQKNETADLWHARLGH 136
           ++V+FGP DVKVY ++K++ TP MEGRR++SIYVMS E AYV +T+KNET+DLWH RLGH
Sbjct: 408 HYVLFGPQDVKVYRDVKITETPTMEGRRLESIYVMSAESAYVDRTRKNETSDLWHMRLGH 467

Query: 137 VIYNKLKTIINKFMLKGLPQLDIKEDMVCAGCQYGKAHQLPFKESKFRVKQPLELVHSDV 196
           V Y+KL  ++ K MLKGLPQLD++ D VCAGCQYGKAHQLP+ ESKF+ K+PLELVHSDV
Sbjct: 468 VSYSKLSVMVKKSMLKGLPQLDVRTDTVCAGCQYGKAHQLPYDESKFKAKEPLELVHSDV 527

Query: 197 FGPVKQSSIGGMRYMVTFIDDFSRYAWVFFMKEKFETITNFKEFKEQVENELEKRIQCLR 256
           FGPVKQ SI GMRYMVTFIDDFSRY WVFFMKEK +T + FKEF++  E E+ K+I CLR
Sbjct: 528 FGPVKQQSISGMRYMVTFIDDFSRYVWVFFMKEKSDTFSKFKEFRDSAEGEVGKKICCLR 587

Query: 257 SDNRGEYISNEFSQYLKKYKIYHQLTCPNTSEKNGLAERKNRHPAKVYRSMLHASNVLGR 316
           +DN GEY SNEFSQYL++ +I HQ TC NT ++NG+AERKNRH A++ RSMLHA NV GR
Sbjct: 588 TDNGGEYRSNEFSQYLRECRIRHQYTCANTPQQNGVAERKNRHLAEICRSMLHAKNVSGR 647

Query: 317 F 318
           F
Sbjct: 648 F 648

[Close]

BLAST of Cmc08g0222841 vs. NCBI nr
Match: KAE8669333.1 (hypothetical protein F3Y22_tig00112249pilonHSYRG00290 [Hibiscus syriacus])

HSP 1 Score: 432.2 bits (1110), Expect = 3.9e-117
Identity = 201/301 (66.78%), Postives = 248/301 (82.39%), Query Frame = 0


Query: 17  EIRGSRVVVIANNSKLPIAQVGKTMIVPCSNSNQVELDHVFYVPGMKKNLMSVSQLTSAD 76
           E  G RVVV A+NS+LPI  +GKT++ P  N+NQV+L  V++VPGMKKNL+SV+QLTS+ 
Sbjct: 272 EYNGGRVVVTADNSRLPITHIGKTIVTPRYNTNQVQLQDVYHVPGMKKNLLSVAQLTSSG 331

Query: 77  NFVVFGPDDVKVYHNLKVSGTPLMEGRRIKSIYVMSVEIAYVKKTQKNETADLWHARLGH 136
           ++V+FGP DVKVY ++K+S TP MEGRR++SIYVMS E AYV +T+KNET+DLWH RLGH
Sbjct: 332 HYVLFGPQDVKVYRDVKISETPTMEGRRLESIYVMSAESAYVDRTRKNETSDLWHMRLGH 391

Query: 137 VIYNKLKTIINKFMLKGLPQLDIKEDMVCAGCQYGKAHQLPFKESKFRVKQPLELVHSDV 196
           + Y+KL  ++ K MLKGLPQLD++ D VCAGCQYGK HQLP+ ESKF+ K+PLELVHSDV
Sbjct: 392 ISYSKLSVMVKKSMLKGLPQLDVRTDTVCAGCQYGKVHQLPYDESKFKAKEPLELVHSDV 451

Query: 197 FGPVKQSSIGGMRYMVTFIDDFSRYAWVFFMKEKFETITNFKEFKEQVENELEKRIQCLR 256
           FGPVKQ SI GMRYMVTFIDDFSRY W+FFMKEK +T + FKEF++  E E+ K+I CLR
Sbjct: 452 FGPVKQQSISGMRYMVTFIDDFSRYVWIFFMKEKSDTFSKFKEFRDSAEGEVGKKICCLR 511

Query: 257 SDNRGEYISNEFSQYLKKYKIYHQLTCPNTSEKNGLAERKNRHPAKVYRSMLHASNVLGR 316
           +DNRGEY SNEFSQYL++ +I HQ TC NT + NG+AERKNRH  ++ RSMLHA NV GR
Sbjct: 512 TDNRGEYRSNEFSQYLRECRIRHQYTCANTPQHNGVAERKNRHLVEICRSMLHAKNVPGR 571

Query: 317 F 318
           F
Sbjct: 572 F 572

[Close]

BLAST of Cmc08g0222841 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 6.0e-36
Identity = 105/308 (34.09%), Postives = 165/308 (53.57%), Query Frame = 0


Query: 12  LTIRQEIRGSRVVVIANNSKLPIAQVGKTMIVPCSNSNQVELDHVFYVPGMKKNLMSVSQ 71
           L+  Q   G   V+IA+ S +PI   G   +   ++S  ++L+ V YVP + KNL+SV +
Sbjct: 327 LSFHQPYTGGDDVMIADGSTIPITHTGSASLP--TSSRSLDLNKVLYVPNIHKNLISVYR 386

Query: 72  LTSADNF-VVFGPDDVKVYHNLKVSGTPLMEGRRIKSIY----VMSVEIAYVKKTQKNET 131
           L + +   V F P   +V  +L  +G PL++G+    +Y      S  ++         T
Sbjct: 387 LCNTNRVSVEFFPASFQV-KDLN-TGVPLLQGKTKDELYEWPIASSQAVSMFASPCSKAT 446

Query: 132 ADLWHARLGHVIYNKLKTIINKFMLKGLPQLDIKEDMV-CAGCQYGKAHQLPFKESKFRV 191
              WH+RLGH     L ++I+      LP L+    ++ C+ C   K+H++PF  S    
Sbjct: 447 HSSWHSRLGHPSLAILNSVISN---HSLPVLNPSHKLLSCSDCFINKSHKVPFSNSTITS 506

Query: 192 KQPLELVHSDVF-GPVKQSSIGGMRYMVTFIDDFSRYAWVFFMKEKFETITNFKEFKEQV 251
            +PLE ++SDV+  P+   SI   RY V F+D F+RY W++ +K+K +    F  FK  V
Sbjct: 507 SKPLEYIYSDVWSSPI--LSIDNYRYYVIFVDHFTRYTWLYPLKQKSQVKDTFIIFKSLV 566

Query: 252 ENELEKRIQCLRSDNRGEYISNEFSQYLKKYKIYHQLTCPNTSEKNGLAERKNRHPAKVY 311
           EN  + RI  L SDN GE++      YL ++ I H  + P+T E NGL+ERK+RH  ++ 
Sbjct: 567 ENRFQTRIGTLYSDNGGEFV--VLRDYLSQHGISHFTSPPHTPEHNGLSERKHRHIVEMG 623

[Close]

BLAST of Cmc08g0222841 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 7.9e-36
Identity = 100/307 (32.57%), Postives = 166/307 (54.07%), Query Frame = 0


Query: 12  LTIRQEIRGSRVVVIANNSKLPIAQVGKTMIVPCSNSNQVELDHVFYVPGMKKNLMSVSQ 71
           L++ Q   G   V++A+ S +PI+  G T +   + S  + L ++ YVP + KNL+SV +
Sbjct: 348 LSLHQPYTGGDDVMVADGSTIPISHTGSTSL--STKSRPLNLHNILYVPNIHKNLISVYR 407

Query: 72  LTSADNF-VVFGPDDVKVYHNLKVSGTPLMEGRRIKSIY----VMSVEIAYVKKTQKNET 131
           L +A+   V F P   +V  +L  +G PL++G+    +Y      S  ++         T
Sbjct: 408 LCNANGVSVEFFPASFQV-KDLN-TGVPLLQGKTKDELYEWPIASSQPVSLFASPSSKAT 467

Query: 132 ADLWHARLGHVIYNKLKTIINKFMLKGLPQLDIKEDMVCAGCQYGKAHQLPFKESKFRVK 191
              WHARLGH   + L ++I+ + L  L      + + C+ C   K++++PF +S     
Sbjct: 468 HSSWHARLGHPAPSILNSVISNYSLSVLN--PSHKFLSCSDCLINKSNKVPFSQSTINST 527

Query: 192 QPLELVHSDVF-GPVKQSSIGGMRYMVTFIDDFSRYAWVFFMKEKFETITNFKEFKEQVE 251
           +PLE ++SDV+  P+   S    RY V F+D F+RY W++ +K+K +    F  FK  +E
Sbjct: 528 RPLEYIYSDVWSSPI--LSHDNYRYYVIFVDHFTRYTWLYPLKQKSQVKETFITFKNLLE 587

Query: 252 NELEKRIQCLRSDNRGEYISNEFSQYLKKYKIYHQLTCPNTSEKNGLAERKNRHPAKVYR 311
           N  + RI    SDN GE+++    +Y  ++ I H  + P+T E NGL+ERK+RH  +   
Sbjct: 588 NRFQTRIGTFYSDNGGEFVA--LWEYFSQHGISHLTSPPHTPEHNGLSERKHRHIVETGL 644

[Close]

BLAST of Cmc08g0222841 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 6.7e-35
Identity = 99/295 (33.56%), Postives = 149/295 (50.51%), Query Frame = 0


Query: 24  VVIANNSKLPIAQVGKTMI---VPCSNSNQVELDHVFYVPGMKKNLMSVSQLTSADNFVV 83
           V + N S   IA +G   I   V C+    + L  V +VP ++ NL+S   L        
Sbjct: 322 VKMGNTSYSKIAGIGDICIKTNVGCT----LVLKDVRHVPDLRMNLISGIALDRDGYESY 381

Query: 84  FGPDDVKVYHNLKVSGTPLMEGRRIKSIYVMSVEIAY--VKKTQKNETADLWHARLGHVI 143
           F     ++     V    +  G    ++Y  + EI    +   Q   + DLWH R+GH+ 
Sbjct: 382 FANQKWRLTKGSLVIAKGVARG----TLYRTNAEICQGELNAAQDEISVDLWHKRMGHMS 441

Query: 144 YNKLKTIINKFMLKGLPQLDIKEDMVCAGCQYGKAHQLPFKESKFRVKQPLELVHSDVFG 203
              L+ +  K ++       +K    C  C +GK H++ F+ S  R    L+LV+SDV G
Sbjct: 442 EKGLQILAKKSLISYAKGTTVKP---CDYCLFGKQHRVSFQTSSERKLNILDLVYSDVCG 501

Query: 204 PVKQSSIGGMRYMVTFIDDFSRYAWVFFMKEKFETITNFKEFKEQVENELEKRIQCLRSD 263
           P++  S+GG +Y VTFIDD SR  WV+ +K K +    F++F   VE E  ++++ LRSD
Sbjct: 502 PMEIESMGGNKYFVTFIDDASRKLWVYILKTKDQVFQVFQKFHALVERETGRKLKRLRSD 561

Query: 264 NRGEYISNEFSQYLKKYKIYHQLTCPNTSEKNGLAERKNRHPAKVYRSMLHASNV 314
           N GEY S EF +Y   + I H+ T P T + NG+AER NR   +  RSML  + +
Sbjct: 562 NGGEYTSREFEEYCSSHGIRHEKTVPGTPQHNGVAERMNRTIVEKVRSMLRMAKL 605

[Close]

BLAST of Cmc08g0222841 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 127.9 bits (320), Expect = 2.1e-28
Identity = 90/297 (30.30%), Postives = 143/297 (48.15%), Query Frame = 0


Query: 31  KLPIAQVG------KTMIVPCSNSNQVELDHVFYVPGMKKNLMSVSQLTSADNFVVFGPD 90
           K+ +A+ G      K  IV   N +++ L+ V +      NLMSV +L  A   + F   
Sbjct: 317 KIAVAKQGEFIYATKRGIVRLRNDHEITLEDVLFCKEAAGNLMSVKRLQEAGMSIEFDKS 376

Query: 91  DVKVYHN----LKVSGTPLMEGRRIKSIYVMSVEIAYVKKTQKNETADLWHARLGHVIYN 150
            V +  N    +K SG        + ++ V++ +   +    KN    LWH R GH+   
Sbjct: 377 GVTISKNGLMVVKNSG-------MLNNVPVINFQAYSINAKHKNNFR-LWHERFGHISDG 436

Query: 151 KLKTIINKFMLKGLPQLDIKE--DMVCAGCQYGKAHQLPFKE--SKFRVKQPLELVHSDV 210
           KL  I  K M      L+  E    +C  C  GK  +LPFK+   K  +K+PL +VHSDV
Sbjct: 437 KLLEIKRKNMFSDQSLLNNLELSCEICEPCLNGKQARLPFKQLKDKTHIKRPLFVVHSDV 496

Query: 211 FGPVKQSSIGGMRYMVTFIDDFSRYAWVFFMKEKFETITNFKEFKEQVENELEKRIQCLR 270
            GP+   ++    Y V F+D F+ Y   + +K K +  + F++F  + E     ++  L 
Sbjct: 497 CGPITPVTLDDKNYFVIFVDQFTHYCVTYLIKYKSDVFSMFQDFVAKSEAHFNLKVVYLY 556

Query: 271 SDNRGEYISNEFSQYLKKYKIYHQLTCPNTSEKNGLAERKNRHPAKVYRSMLHASNV 314
            DN  EY+SNE  Q+  K  I + LT P+T + NG++ER  R   +  R+M+  + +
Sbjct: 557 IDNGREYLSNEMRQFCVKKGISYHLTVPHTPQLNGVSERMIRTITEKARTMVSGAKL 605

[Close]

BLAST of Cmc08g0222841 vs. ExPASy Swiss-Prot
Match: Q12501 (Transposon Ty2-OR2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY2B-OR2 PE=1 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 3.6e-12
Identity = 70/317 (22.08%), Postives = 136/317 (42.90%), Query Frame = 0


Query: 24  VVIANNSKLPIAQVGKTMIVPCSNSNQVELDHVFYVPGMKKNLMSVSQLTSADNFVVFGP 83
           +V A    +PI  +G  +     N  +  +    + P +  +L+S+S+LT+ +    F  
Sbjct: 482 IVDAQKQDIPINAIG-NLHFNFQNGTKTSI-KALHTPNIAYDLLSLSELTNQNITACFTR 541

Query: 84  DDVKVYHNLKVSGTPLMEGRRIKSIYVMS--------VEIAYVKKTQKNETAD-----LW 143
           + ++     +  GT L    +    Y +S        +    +    K+++ +     L 
Sbjct: 542 NTLE-----RSDGTVLAPIVKHGDFYWLSKKYLIPSHISKLTINNVNKSKSVNKYPYPLI 601

Query: 144 HARLGHVIYNKLKTIINKFMLKGLPQLDIK----EDMVCAGCQYGKA--------HQLPF 203
           H  LGH  +  ++  + K  +  L + DI+        C  C  GK+         +L +
Sbjct: 602 HRMLGHANFRSIQKSLKKNAVTYLKESDIEWSNASTYQCPDCLIGKSTKHRHVKGSRLKY 661

Query: 204 KESKFRVKQPLELVHSDVFGPVKQSSIGGMRYMVTFIDDFSRYAWVFFMKE-KFETITN- 263
           +ES     +P + +H+D+FGPV         Y ++F D+ +R+ WV+ + + + E+I N 
Sbjct: 662 QES----YEPFQYLHTDIFGPVHHLPKSAPSYFISFTDEKTRFQWVYPLHDRREESILNV 721

Query: 264 FKEFKEQVENELEKRIQCLRSDNRGEYISNEFSQYLKKYKIYHQLTCPNTSEKNGLAERK 314
           F      ++N+   R+  ++ D   EY +    ++     I    T    S  +G+AER 
Sbjct: 722 FTSILAFIKNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGITACYTTTADSRAHGVAERL 781

[Close]

BLAST of Cmc08g0222841 vs. ExPASy TrEMBL
Match: A0A2N9HXV3 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS44817 PE=4 SV=1)

HSP 1 Score: 440.3 bits (1131), Expect = 7.0e-120
Identity = 208/301 (69.10%), Postives = 253/301 (84.05%), Query Frame = 0


Query: 17  EIRGSRVVVIANNSKLPIAQVGKTMIVPCSNSNQVELDHVFYVPGMKKNLMSVSQLTSAD 76
           E +G RVVV A+NS+LPIA +GKT++ P  NSNQV L  V++VPGMKKNL+SV+QLT + 
Sbjct: 367 EYKGGRVVVTADNSRLPIAHIGKTIVTPRYNSNQVPLQDVYHVPGMKKNLLSVAQLTLSG 426

Query: 77  NFVVFGPDDVKVYHNLKVSGTPLMEGRRIKSIYVMSVEIAYVKKTQKNETADLWHARLGH 136
           ++V+FGP DVKVY +LK+S TP+MEG+R++S+YVMS E AYV +T+KNET DLWH RLGH
Sbjct: 427 HYVLFGPQDVKVYRDLKISETPIMEGQRLESVYVMSAESAYVDRTRKNETTDLWHMRLGH 486

Query: 137 VIYNKLKTIINKFMLKGLPQLDIKEDMVCAGCQYGKAHQLPFKESKFRVKQPLELVHSDV 196
           V Y+KL  ++ K MLKGLPQLD++ D VCAGCQYGKAHQLP+KESKF+ K+PLELVHSDV
Sbjct: 487 VSYSKLSIMVKKSMLKGLPQLDVRTDTVCAGCQYGKAHQLPYKESKFKAKEPLELVHSDV 546

Query: 197 FGPVKQSSIGGMRYMVTFIDDFSRYAWVFFMKEKFETITNFKEFKEQVENELEKRIQCLR 256
           FGPVKQ SIGGMRYMVTFIDDFSRY WVFFMKEK +T + FKEF+E VE E+ K+I CLR
Sbjct: 547 FGPVKQPSIGGMRYMVTFIDDFSRYVWVFFMKEKSDTFSKFKEFRESVEGEVGKKIGCLR 606

Query: 257 SDNRGEYISNEFSQYLKKYKIYHQLTCPNTSEKNGLAERKNRHPAKVYRSMLHASNVLGR 316
           +DN GEY S+EFSQYL++ +I HQ TC NT ++NG+AERKNRH A+V RSMLHA NV GR
Sbjct: 607 TDNGGEYSSSEFSQYLRECRIRHQYTCANTPQQNGIAERKNRHLAEVCRSMLHAKNVPGR 666

Query: 317 F 318
           F
Sbjct: 667 F 667

[Close]

BLAST of Cmc08g0222841 vs. ExPASy TrEMBL
Match: A0A2N9EJM7 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS2884 PE=4 SV=1)

HSP 1 Score: 440.3 bits (1131), Expect = 7.0e-120
Identity = 208/301 (69.10%), Postives = 252/301 (83.72%), Query Frame = 0


Query: 17  EIRGSRVVVIANNSKLPIAQVGKTMIVPCSNSNQVELDHVFYVPGMKKNLMSVSQLTSAD 76
           E +G RVVV A+NS+LPIA +GKT++ P  NSNQV L  V++VPGMKKNL+SV+QLT + 
Sbjct: 326 EYKGGRVVVTADNSRLPIAHIGKTIVTPRYNSNQVPLQDVYHVPGMKKNLLSVAQLTLSG 385

Query: 77  NFVVFGPDDVKVYHNLKVSGTPLMEGRRIKSIYVMSVEIAYVKKTQKNETADLWHARLGH 136
           ++V+FGP DVKVY +LK+S TP+MEG+R++S+YVMS E AYV KT+KNET DLWH RLGH
Sbjct: 386 HYVLFGPQDVKVYRDLKISETPIMEGQRLESVYVMSAESAYVDKTRKNETTDLWHMRLGH 445

Query: 137 VIYNKLKTIINKFMLKGLPQLDIKEDMVCAGCQYGKAHQLPFKESKFRVKQPLELVHSDV 196
           V Y+KL  ++ K MLKGLPQLD++ D VCAGCQYGKAHQLP+KESKF+ K+PLELVHSDV
Sbjct: 446 VSYSKLSVMVKKSMLKGLPQLDVRTDTVCAGCQYGKAHQLPYKESKFKAKEPLELVHSDV 505

Query: 197 FGPVKQSSIGGMRYMVTFIDDFSRYAWVFFMKEKFETITNFKEFKEQVENELEKRIQCLR 256
           FGPVKQ SIGGMRYMVTFIDDFSRY WVFFMKEK +T + FKEF+E  E E+ K+I CLR
Sbjct: 506 FGPVKQPSIGGMRYMVTFIDDFSRYVWVFFMKEKSDTFSKFKEFRESAEGEVGKKIGCLR 565

Query: 257 SDNRGEYISNEFSQYLKKYKIYHQLTCPNTSEKNGLAERKNRHPAKVYRSMLHASNVLGR 316
           +DN GEY S+EFSQYL++ +I HQ TC NT ++NG+AERKNRH A+V RSMLHA NV GR
Sbjct: 566 TDNGGEYSSSEFSQYLRECRIRHQYTCANTPQQNGIAERKNRHLAEVCRSMLHAKNVPGR 625

Query: 317 F 318
           F
Sbjct: 626 F 626

[Close]

BLAST of Cmc08g0222841 vs. ExPASy TrEMBL
Match: A0A2N9HMH0 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS43238 PE=4 SV=1)

HSP 1 Score: 439.9 bits (1130), Expect = 9.1e-120
Identity = 208/301 (69.10%), Postives = 252/301 (83.72%), Query Frame = 0


Query: 17  EIRGSRVVVIANNSKLPIAQVGKTMIVPCSNSNQVELDHVFYVPGMKKNLMSVSQLTSAD 76
           E +G RVVV A+NS+LPIA +GKT++ P  NSNQV L  V++VPGMKKNL+SV+QLT + 
Sbjct: 283 EYKGGRVVVTADNSRLPIAHIGKTIVTPRYNSNQVPLQDVYHVPGMKKNLLSVAQLTLSG 342

Query: 77  NFVVFGPDDVKVYHNLKVSGTPLMEGRRIKSIYVMSVEIAYVKKTQKNETADLWHARLGH 136
           ++V+FGP DVKVY +LK+S TP+MEG+R++S+YVMS E AYV KT+KNET DLWH RLGH
Sbjct: 343 HYVLFGPQDVKVYRDLKISETPIMEGQRLESVYVMSAESAYVDKTRKNETTDLWHMRLGH 402

Query: 137 VIYNKLKTIINKFMLKGLPQLDIKEDMVCAGCQYGKAHQLPFKESKFRVKQPLELVHSDV 196
           V Y+KL  ++ K MLKGLPQLD++ D VCAGCQYGKAHQLP+KESKF+ K+PLELVHSDV
Sbjct: 403 VSYSKLSIMVKKSMLKGLPQLDVRTDTVCAGCQYGKAHQLPYKESKFKAKEPLELVHSDV 462

Query: 197 FGPVKQSSIGGMRYMVTFIDDFSRYAWVFFMKEKFETITNFKEFKEQVENELEKRIQCLR 256
           FGPVKQ SIGGMRYMVTFIDDFSRY WVFFMKEK +T + FKEF+E  E E+ K+I CLR
Sbjct: 463 FGPVKQPSIGGMRYMVTFIDDFSRYVWVFFMKEKSDTFSKFKEFRESAEGEVGKKIGCLR 522

Query: 257 SDNRGEYISNEFSQYLKKYKIYHQLTCPNTSEKNGLAERKNRHPAKVYRSMLHASNVLGR 316
           +DN GEY S+EFSQYL++ +I HQ TC NT ++NG+AERKNRH A+V RSMLHA NV GR
Sbjct: 523 TDNGGEYSSSEFSQYLRECRIRHQYTCANTPQQNGIAERKNRHLAEVCRSMLHAKNVPGR 582

Query: 317 F 318
           F
Sbjct: 583 F 583

[Close]

BLAST of Cmc08g0222841 vs. ExPASy TrEMBL
Match: A0A2N9GKM9 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS27872 PE=4 SV=1)

HSP 1 Score: 439.5 bits (1129), Expect = 1.2e-119
Identity = 208/301 (69.10%), Postives = 252/301 (83.72%), Query Frame = 0


Query: 17  EIRGSRVVVIANNSKLPIAQVGKTMIVPCSNSNQVELDHVFYVPGMKKNLMSVSQLTSAD 76
           E +G RVVV A+NS+LPIA +GKT++ P  NSNQV L  V++VPGMKKNL+SV+QLT + 
Sbjct: 348 EYKGGRVVVTADNSRLPIAHIGKTIVTPRYNSNQVPLQDVYHVPGMKKNLLSVAQLTLSG 407

Query: 77  NFVVFGPDDVKVYHNLKVSGTPLMEGRRIKSIYVMSVEIAYVKKTQKNETADLWHARLGH 136
           ++V+FGP DVKVY +LK+S TP+MEG+R++S+YVMS E AYV KT+KNET DLWH RLGH
Sbjct: 408 HYVLFGPQDVKVYRDLKISETPIMEGQRLESVYVMSAESAYVDKTRKNETTDLWHMRLGH 467

Query: 137 VIYNKLKTIINKFMLKGLPQLDIKEDMVCAGCQYGKAHQLPFKESKFRVKQPLELVHSDV 196
           V Y+KL  ++ K MLKGLPQLD++ D VCAGCQYGKAHQLP+KESKF+ K+PLELVHSDV
Sbjct: 468 VSYSKLSIMVKKSMLKGLPQLDVRTDTVCAGCQYGKAHQLPYKESKFKAKEPLELVHSDV 527

Query: 197 FGPVKQSSIGGMRYMVTFIDDFSRYAWVFFMKEKFETITNFKEFKEQVENELEKRIQCLR 256
           FGPVKQ SIGGMRYMVTFIDDFSRY WVFFMKEK +T + FKEF+E  E E+ K+I CLR
Sbjct: 528 FGPVKQPSIGGMRYMVTFIDDFSRYVWVFFMKEKSDTFSKFKEFRESAEGEVGKKIGCLR 587

Query: 257 SDNRGEYISNEFSQYLKKYKIYHQLTCPNTSEKNGLAERKNRHPAKVYRSMLHASNVLGR 316
           +DN GEY S+EFSQYL++ +I HQ TC NT ++NG+AERKNRH A+V RSMLHA NV GR
Sbjct: 588 TDNGGEYSSSEFSQYLRECQIRHQYTCANTPQQNGIAERKNRHLAEVCRSMLHAKNVPGR 647

Query: 317 F 318
           F
Sbjct: 648 F 648

[Close]

BLAST of Cmc08g0222841 vs. ExPASy TrEMBL
Match: A0A2N9F162 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS12619 PE=4 SV=1)

HSP 1 Score: 439.1 bits (1128), Expect = 1.6e-119
Identity = 207/301 (68.77%), Postives = 252/301 (83.72%), Query Frame = 0


Query: 17  EIRGSRVVVIANNSKLPIAQVGKTMIVPCSNSNQVELDHVFYVPGMKKNLMSVSQLTSAD 76
           E +G RVVV A+NS+LPIA +GKT++ P  NSNQV L  V++VPGMKKNL+SV+QLT + 
Sbjct: 348 EYKGGRVVVTADNSRLPIAHIGKTIVTPRYNSNQVPLQDVYHVPGMKKNLLSVAQLTLSG 407

Query: 77  NFVVFGPDDVKVYHNLKVSGTPLMEGRRIKSIYVMSVEIAYVKKTQKNETADLWHARLGH 136
           ++V+FGP DVKVY +LK+S TP+MEG+R++S+YVMS E AYV +T+KNET DLWH RLGH
Sbjct: 408 HYVLFGPQDVKVYRDLKISETPIMEGQRLESVYVMSAESAYVDRTRKNETTDLWHMRLGH 467

Query: 137 VIYNKLKTIINKFMLKGLPQLDIKEDMVCAGCQYGKAHQLPFKESKFRVKQPLELVHSDV 196
           V Y+KL  ++ K MLKGLPQLD++ D VCAGCQYGKAHQLP+KESKF+ K+PLELVHSDV
Sbjct: 468 VSYSKLSVMVKKSMLKGLPQLDVRTDTVCAGCQYGKAHQLPYKESKFKAKEPLELVHSDV 527

Query: 197 FGPVKQSSIGGMRYMVTFIDDFSRYAWVFFMKEKFETITNFKEFKEQVENELEKRIQCLR 256
           FGPVKQ SIGGMRYMVTFIDDFSRY WVFFMKEK +T + FKEF+E  E E+ K+I CLR
Sbjct: 528 FGPVKQPSIGGMRYMVTFIDDFSRYVWVFFMKEKSDTFSKFKEFRESAEGEVGKKIGCLR 587

Query: 257 SDNRGEYISNEFSQYLKKYKIYHQLTCPNTSEKNGLAERKNRHPAKVYRSMLHASNVLGR 316
           +DN GEY S+EFSQYL++ +I HQ TC NT ++NG+AERKNRH A+V RSMLHA NV GR
Sbjct: 588 TDNGGEYSSSEFSQYLRECRIRHQYTCANTPQQNGIAERKNRHLAEVCRSMLHAKNVPGR 647

Query: 317 F 318
           F
Sbjct: 648 F 648

[Close]

BLAST of Cmc08g0222841 vs. TAIR 10
Match: ATMG00300.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 62.8 bits (151), Expect = 5.8e-10
Identity = 35/104 (33.65%), Postives = 58/104 (55.77%), Query Frame = 0


Query: 99  LMEGRRIKSIYVM--SVEI--AYVKKTQKNETADLWHARLGHVIYNKLKTIINKFMLKGL 158
           +++G R  S+Y++  SVE   + + +T K+ET  LWH+RL H+    ++ ++ K  L   
Sbjct: 38  ILKGNRHDSLYILQGSVETGESNLAETAKDETR-LWHSRLAHMSQRGMELLVKKGFLDSS 97

Query: 159 PQLDIKEDMVCAGCQYGKAHQLPFKESKFRVKQPLELVHSDVFG 199
               +K    C  C YGK H++ F   +   K PL+ VHSD++G
Sbjct: 98  KVSSLK---FCEDCIYGKTHRVNFSTGQHTTKNPLDYVHSDLWG 137

The following BLAST results are available for this feature:

BLAST of Cmc08g0222841 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK27792.1	7.1e-119	93.67	Integrase, catalytic core [Cucumis melo var. makuwa]	[more]
KAE8705435.1	1.8e-117	67.44	hypothetical protein F3Y22_tig00110429pilonHSYRG01243 [Hibiscus syriacus]	[more]
KAE8687058.1	1.8e-117	67.44	hypothetical protein F3Y22_tig00111024pilonHSYRG00006 [Hibiscus syriacus]	[more]
KAE8715296.1	1.8e-117	67.44	hypothetical protein F3Y22_tig00110183pilonHSYRG00102 [Hibiscus syriacus]	[more]
KAE8669333.1	3.9e-117	66.78	hypothetical protein F3Y22_tig00112249pilonHSYRG00290 [Hibiscus syriacus]	[more]

BLAST of Cmc08g0222841 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZT94	6.0e-36	34.09	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	7.9e-36	32.57	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P10978	6.7e-35	33.56	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	2.1e-28	30.30	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q12501	3.6e-12	22.08	Transposon Ty2-OR2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC ...	[more]

BLAST of Cmc08g0222841 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2N9HXV3	7.0e-120	69.10	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS44817 PE=4 SV=1	[more]
A0A2N9EJM7	7.0e-120	69.10	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS2884 PE=4 SV=1	[more]
A0A2N9HMH0	9.1e-120	69.10	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS43238 PE=4 SV=1	[more]
A0A2N9GKM9	1.2e-119	69.10	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS27872 PE=4 SV=1	[more]
A0A2N9F162	1.6e-119	68.77	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS12619 PE=4 SV=1	[more]

BLAST of Cmc08g0222841 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00300.1	5.8e-10	33.65	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 238..258
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 171..308
None	No IPR available	PANTHER	PTHR11439:SF324	RIBONUCLEASE H-LIKE DOMAIN, GAG-PRE-INTEGRASE DOMAIN, GAG-POLYPEPTIDE OF LTR COPIA-TYPE-RELATED	coord: 171..308
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 186..285 e-value: 5.4E-13 score: 49.1
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 184..317 score: 18.132689
IPR025724	GAG-pre-integrase domain	PFAM	PF13976	gag_pre-integrs	coord: 122..173 e-value: 6.7E-13 score: 48.3
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 181..316 e-value: 1.5E-28 score: 101.4
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 183..312

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0222841.1	Cmc08g0222841.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding