Cmc08g0222481 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0222481
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr08: 11336460 .. 11336960 (-)
RNA-Seq Expression	Cmc08g0222481
Synteny	Cmc08g0222481

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAGGGAAGTAGCAGAATTTGTTAGTAGATGCTTGGTGTGTCAGCAGGTTAAGGCACCAAGGCAGAAACCAGCGGATTTATTACAACCCTTGAGCATACCGGAATGGAAGTGGGAAAACGTGTCCATGGATTTCATTACAGGGCTGCCGAGAACTCTGAGGGGTTTTACAGTGATTTGGGTTGTGGTGGACAGACTTACCAAATCAGCGCACTTCGTTCCGGGTAAATCCACCTATACTGCTAGTAAGTGGGCACAGCTGTACATGTCTGAGATAGTGAGATTACATGGGGTGCCAGTGTCGATTGTTTCTGATAGAGATGCCCGTTTCACTTCCAAATTCTGGAAGGATTTGCAGACTGCTATGGGCACGAGGTTAGACTTTAGTACAGCTTTCCGTCCACAGACTGACGGTCAGACTGAGCGTCTGAACCAAGTTTTAGAGGATATGTTGCGAGCGTGTGCATTGGAATTTCCAGGTAGCTGGGTCCTGAGTTAG

mRNA sequence

ATGAAGAGGGAAGTAGCAGAATTTGTTAGTAGATGCTTGGTGTGTCAGCAGGTTAAGGCACCAAGGCAGAAACCAGCGGATTTATTACAACCCTTGAGCATACCGGAATGGAAGTGGGAAAACGTGTCCATGGATTTCATTACAGGGCTGCCGAGAACTCTGAGGGGTTTTACAGTGATTTGGGTTGTGGTGGACAGACTTACCAAATCAGCGCACTTCGTTCCGGGTAAATCCACCTATACTGCTAGTAAGTGGGCACAGCTGTACATGTCTGAGATAGTGAGATTACATGGGGTGCCAGTGTCGATTGTTTCTGATAGAGATGCCCGTTTCACTTCCAAATTCTGGAAGGATTTGCAGACTGCTATGGGCACGAGGTTAGACTTTAGTACAGCTTTCCGTCCACAGACTGACGGTCAGACTGAGCGTCTGAACCAAGTTTTAGAGGATATGTTGCGAGCGTGTGCATTGGAATTTCCAGGTAGCTGGGTCCTGAGTTAG

Coding sequence (CDS)

ATGAAGAGGGAAGTAGCAGAATTTGTTAGTAGATGCTTGGTGTGTCAGCAGGTTAAGGCACCAAGGCAGAAACCAGCGGATTTATTACAACCCTTGAGCATACCGGAATGGAAGTGGGAAAACGTGTCCATGGATTTCATTACAGGGCTGCCGAGAACTCTGAGGGGTTTTACAGTGATTTGGGTTGTGGTGGACAGACTTACCAAATCAGCGCACTTCGTTCCGGGTAAATCCACCTATACTGCTAGTAAGTGGGCACAGCTGTACATGTCTGAGATAGTGAGATTACATGGGGTGCCAGTGTCGATTGTTTCTGATAGAGATGCCCGTTTCACTTCCAAATTCTGGAAGGATTTGCAGACTGCTATGGGCACGAGGTTAGACTTTAGTACAGCTTTCCGTCCACAGACTGACGGTCAGACTGAGCGTCTGAACCAAGTTTTAGAGGATATGTTGCGAGCGTGTGCATTGGAATTTCCAGGTAGCTGGGTCCTGAGTTAG

Protein sequence

MKREVAEFVSRCLVCQQVKAPRQKPADLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKDLQTAMGTRLDFSTAFRPQTDGQTERLNQVLEDMLRACALEFPGSWVLS

Homology

[Close]

BLAST of Cmc08g0222481 vs. NCBI nr
Match: KAA0047043.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 331.6 bits (849), Expect = 3.8e-87
Identity = 160/163 (98.16%), Postives = 160/163 (98.16%), Query Frame = 0


Query: 1   MKREVAEFVSRCLVCQQVKAPRQKPADLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVI 60
           MKREVAEFVSRCLVCQQVKAPRQKPA LLQPLSIPEWKWENVSMDFITGLPRTLRGFTVI
Sbjct: 163 MKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVI 222

Query: 61  WVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKDLQ 120
           WVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWK LQ
Sbjct: 223 WVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQ 282

Query: 121 TAMGTRLDFSTAFRPQTDGQTERLNQVLEDMLRACALEFPGSW 164
           TAMGTRLDFSTAF PQTDGQTERLNQVLEDMLRACALEFPGSW
Sbjct: 283 TAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 325

[Close]

BLAST of Cmc08g0222481 vs. NCBI nr
Match: KAA0065438.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 331.6 bits (849), Expect = 3.8e-87
Identity = 160/163 (98.16%), Postives = 160/163 (98.16%), Query Frame = 0


Query: 1   MKREVAEFVSRCLVCQQVKAPRQKPADLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVI 60
           MKREVAEFVSRCLVCQQVKAPRQKPA LLQPLSIPEWKWENVSMDFITGLPRTLRGFTVI
Sbjct: 291 MKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVI 350

Query: 61  WVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKDLQ 120
           WVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWK LQ
Sbjct: 351 WVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQ 410

Query: 121 TAMGTRLDFSTAFRPQTDGQTERLNQVLEDMLRACALEFPGSW 164
           TAMGTRLDFSTAF PQTDGQTERLNQVLEDMLRACALEFPGSW
Sbjct: 411 TAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 453

[Close]

BLAST of Cmc08g0222481 vs. NCBI nr
Match: KAA0058463.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 331.3 bits (848), Expect = 4.9e-87
Identity = 160/163 (98.16%), Postives = 160/163 (98.16%), Query Frame = 0


Query: 1   MKREVAEFVSRCLVCQQVKAPRQKPADLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVI 60
           MKREVAEFVSRCLVCQQVKAPRQKPA LLQPLSIPEWKWENVSMDFITGLPRTLRGFTVI
Sbjct: 21  MKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVI 80

Query: 61  WVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKDLQ 120
           WVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWK LQ
Sbjct: 81  WVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKRLQ 140

Query: 121 TAMGTRLDFSTAFRPQTDGQTERLNQVLEDMLRACALEFPGSW 164
           TAMGTRLDFSTAF PQTDGQTERLNQVLEDMLRACALEFPGSW
Sbjct: 141 TAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 183

[Close]

BLAST of Cmc08g0222481 vs. NCBI nr
Match: AAO45752.1 (pol protein [Cucumis melo subsp. melo])

HSP 1 Score: 330.5 bits (846), Expect = 8.4e-87
Identity = 159/163 (97.55%), Postives = 160/163 (98.16%), Query Frame = 0


Query: 1   MKREVAEFVSRCLVCQQVKAPRQKPADLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVI 60
           MKREVAEFVS+CLVCQQVKAPRQKPA LLQPLSIPEWKWENVSMDFITGLPRTLRGFTVI
Sbjct: 534 MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVI 593

Query: 61  WVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKDLQ 120
           WVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWK LQ
Sbjct: 594 WVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQ 653

Query: 121 TAMGTRLDFSTAFRPQTDGQTERLNQVLEDMLRACALEFPGSW 164
           TAMGTRLDFSTAF PQTDGQTERLNQVLEDMLRACALEFPGSW
Sbjct: 654 TAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 696

[Close]

BLAST of Cmc08g0222481 vs. NCBI nr
Match: KAA0053631.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 330.5 bits (846), Expect = 8.4e-87
Identity = 159/163 (97.55%), Postives = 160/163 (98.16%), Query Frame = 0


Query: 1   MKREVAEFVSRCLVCQQVKAPRQKPADLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVI 60
           MKREVAEFVS+CLVCQQVKAPRQKPA LLQPLSIPEWKWENVSMDFITGLPRTLRGFTVI
Sbjct: 21  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVI 80

Query: 61  WVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKDLQ 120
           WVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWK LQ
Sbjct: 81  WVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQ 140

Query: 121 TAMGTRLDFSTAFRPQTDGQTERLNQVLEDMLRACALEFPGSW 164
           TAMGTRLDFSTAF PQTDGQTERLNQVLEDMLRACALEFPGSW
Sbjct: 141 TAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 183

[Close]

BLAST of Cmc08g0222481 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 6.8e-31
Identity = 66/164 (40.24%), Postives = 96/164 (58.54%), Query Frame = 0


Query: 1    MKREVAEFVSRCLVCQQVKAPRQKPADLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVI 60
            +++++ E+V  C  CQ  K+   KP   LQP+   E  WE++SMDFIT LP +  G+  +
Sbjct: 946  IRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPES-SGYNAL 1005

Query: 61   WVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKDLQ 120
            +VVVDR +K A  VP   + TA + A+++   ++   G P  I++D D  FTS+ WKD  
Sbjct: 1006 FVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFA 1065

Query: 121  TAMGTRLDFSTAFRPQTDGQTERLNQVLEDMLRACALEFPGSWV 165
                  + FS  +RPQTDGQTER NQ +E +LR      P +WV
Sbjct: 1066 HKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWV 1108

[Close]

BLAST of Cmc08g0222481 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 6.8e-31
Identity = 66/164 (40.24%), Postives = 96/164 (58.54%), Query Frame = 0


Query: 1    MKREVAEFVSRCLVCQQVKAPRQKPADLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVI 60
            +++++ E+V  C  CQ  K+   KP   LQP+   E  WE++SMDFIT LP +  G+  +
Sbjct: 946  IRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPES-SGYNAL 1005

Query: 61   WVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKDLQ 120
            +VVVDR +K A  VP   + TA + A+++   ++   G P  I++D D  FTS+ WKD  
Sbjct: 1006 FVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFA 1065

Query: 121  TAMGTRLDFSTAFRPQTDGQTERLNQVLEDMLRACALEFPGSWV 165
                  + FS  +RPQTDGQTER NQ +E +LR      P +WV
Sbjct: 1066 HKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWV 1108

[Close]

BLAST of Cmc08g0222481 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 6.8e-31
Identity = 66/164 (40.24%), Postives = 96/164 (58.54%), Query Frame = 0


Query: 1    MKREVAEFVSRCLVCQQVKAPRQKPADLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVI 60
            +++++ E+V  C  CQ  K+   KP   LQP+   E  WE++SMDFIT LP +  G+  +
Sbjct: 946  IRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPES-SGYNAL 1005

Query: 61   WVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKDLQ 120
            +VVVDR +K A  VP   + TA + A+++   ++   G P  I++D D  FTS+ WKD  
Sbjct: 1006 FVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFA 1065

Query: 121  TAMGTRLDFSTAFRPQTDGQTERLNQVLEDMLRACALEFPGSWV 165
                  + FS  +RPQTDGQTER NQ +E +LR      P +WV
Sbjct: 1066 HKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWV 1108

[Close]

BLAST of Cmc08g0222481 vs. ExPASy Swiss-Prot
Match: P0CT35 (Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-2 PE=3 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 6.8e-31
Identity = 66/164 (40.24%), Postives = 96/164 (58.54%), Query Frame = 0


Query: 1    MKREVAEFVSRCLVCQQVKAPRQKPADLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVI 60
            +++++ E+V  C  CQ  K+   KP   LQP+   E  WE++SMDFIT LP +  G+  +
Sbjct: 946  IRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPES-SGYNAL 1005

Query: 61   WVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKDLQ 120
            +VVVDR +K A  VP   + TA + A+++   ++   G P  I++D D  FTS+ WKD  
Sbjct: 1006 FVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFA 1065

Query: 121  TAMGTRLDFSTAFRPQTDGQTERLNQVLEDMLRACALEFPGSWV 165
                  + FS  +RPQTDGQTER NQ +E +LR      P +WV
Sbjct: 1066 HKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWV 1108

[Close]

BLAST of Cmc08g0222481 vs. ExPASy Swiss-Prot
Match: P0CT36 (Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-3 PE=1 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 6.8e-31
Identity = 66/164 (40.24%), Postives = 96/164 (58.54%), Query Frame = 0


Query: 1    MKREVAEFVSRCLVCQQVKAPRQKPADLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVI 60
            +++++ E+V  C  CQ  K+   KP   LQP+   E  WE++SMDFIT LP +  G+  +
Sbjct: 946  IRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPES-SGYNAL 1005

Query: 61   WVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKDLQ 120
            +VVVDR +K A  VP   + TA + A+++   ++   G P  I++D D  FTS+ WKD  
Sbjct: 1006 FVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFA 1065

Query: 121  TAMGTRLDFSTAFRPQTDGQTERLNQVLEDMLRACALEFPGSWV 165
                  + FS  +RPQTDGQTER NQ +E +LR      P +WV
Sbjct: 1066 HKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWV 1108

[Close]

BLAST of Cmc08g0222481 vs. ExPASy TrEMBL
Match: A0A5A7VCT0 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17G001190 PE=4 SV=1)

HSP 1 Score: 331.6 bits (849), Expect = 1.8e-87
Identity = 160/163 (98.16%), Postives = 160/163 (98.16%), Query Frame = 0


Query: 1   MKREVAEFVSRCLVCQQVKAPRQKPADLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVI 60
           MKREVAEFVSRCLVCQQVKAPRQKPA LLQPLSIPEWKWENVSMDFITGLPRTLRGFTVI
Sbjct: 291 MKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVI 350

Query: 61  WVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKDLQ 120
           WVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWK LQ
Sbjct: 351 WVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQ 410

Query: 121 TAMGTRLDFSTAFRPQTDGQTERLNQVLEDMLRACALEFPGSW 164
           TAMGTRLDFSTAF PQTDGQTERLNQVLEDMLRACALEFPGSW
Sbjct: 411 TAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 453

[Close]

BLAST of Cmc08g0222481 vs. ExPASy TrEMBL
Match: A0A5A7TU00 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold829G00280 PE=4 SV=1)

HSP 1 Score: 331.6 bits (849), Expect = 1.8e-87
Identity = 160/163 (98.16%), Postives = 160/163 (98.16%), Query Frame = 0


Query: 1   MKREVAEFVSRCLVCQQVKAPRQKPADLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVI 60
           MKREVAEFVSRCLVCQQVKAPRQKPA LLQPLSIPEWKWENVSMDFITGLPRTLRGFTVI
Sbjct: 163 MKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVI 222

Query: 61  WVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKDLQ 120
           WVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWK LQ
Sbjct: 223 WVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQ 282

Query: 121 TAMGTRLDFSTAFRPQTDGQTERLNQVLEDMLRACALEFPGSW 164
           TAMGTRLDFSTAF PQTDGQTERLNQVLEDMLRACALEFPGSW
Sbjct: 283 TAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 325

[Close]

BLAST of Cmc08g0222481 vs. ExPASy TrEMBL
Match: A0A5A7URG5 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold132G00520 PE=4 SV=1)

HSP 1 Score: 331.3 bits (848), Expect = 2.4e-87
Identity = 160/163 (98.16%), Postives = 160/163 (98.16%), Query Frame = 0


Query: 1   MKREVAEFVSRCLVCQQVKAPRQKPADLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVI 60
           MKREVAEFVSRCLVCQQVKAPRQKPA LLQPLSIPEWKWENVSMDFITGLPRTLRGFTVI
Sbjct: 21  MKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVI 80

Query: 61  WVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKDLQ 120
           WVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWK LQ
Sbjct: 81  WVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKRLQ 140

Query: 121 TAMGTRLDFSTAFRPQTDGQTERLNQVLEDMLRACALEFPGSW 164
           TAMGTRLDFSTAF PQTDGQTERLNQVLEDMLRACALEFPGSW
Sbjct: 141 TAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 183

[Close]

BLAST of Cmc08g0222481 vs. ExPASy TrEMBL
Match: A0A5A7VDP3 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1536G00010 PE=4 SV=1)

HSP 1 Score: 330.5 bits (846), Expect = 4.1e-87
Identity = 159/163 (97.55%), Postives = 160/163 (98.16%), Query Frame = 0


Query: 1   MKREVAEFVSRCLVCQQVKAPRQKPADLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVI 60
           MKREVAEFVS+CLVCQQVKAPRQKPA LLQPLSIPEWKWENVSMDFITGLPRTLRGFTVI
Sbjct: 229 MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVI 288

Query: 61  WVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKDLQ 120
           WVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWK LQ
Sbjct: 289 WVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQ 348

Query: 121 TAMGTRLDFSTAFRPQTDGQTERLNQVLEDMLRACALEFPGSW 164
           TAMGTRLDFSTAF PQTDGQTERLNQVLEDMLRACALEFPGSW
Sbjct: 349 TAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 391

[Close]

BLAST of Cmc08g0222481 vs. ExPASy TrEMBL
Match: A0A5A7SZD6 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G001250 PE=4 SV=1)

HSP 1 Score: 330.5 bits (846), Expect = 4.1e-87
Identity = 159/163 (97.55%), Postives = 160/163 (98.16%), Query Frame = 0


Query: 1   MKREVAEFVSRCLVCQQVKAPRQKPADLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVI 60
           MKREVAEFVS+CLVCQQVKAPRQKPA LLQPLSIPEWKWENVSMDFITGLPRTLRGFTVI
Sbjct: 419 MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVI 478

Query: 61  WVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKDLQ 120
           WVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWK LQ
Sbjct: 479 WVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQ 538

Query: 121 TAMGTRLDFSTAFRPQTDGQTERLNQVLEDMLRACALEFPGSW 164
           TAMGTRLDFSTAF PQTDGQTERLNQVLEDMLRACALEFPGSW
Sbjct: 539 TAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 581

The following BLAST results are available for this feature:

BLAST of Cmc08g0222481 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0047043.1	3.8e-87	98.16	pol protein [Cucumis melo var. makuwa]	[more]
KAA0065438.1	3.8e-87	98.16	pol protein [Cucumis melo var. makuwa]	[more]
KAA0058463.1	4.9e-87	98.16	pol protein [Cucumis melo var. makuwa]	[more]
AAO45752.1	8.4e-87	97.55	pol protein [Cucumis melo subsp. melo]	[more]
KAA0053631.1	8.4e-87	97.55	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc08g0222481 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9UR07	6.8e-31	40.24	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT41	6.8e-31	40.24	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	6.8e-31	40.24	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT35	6.8e-31	40.24	Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT36	6.8e-31	40.24	Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Cmc08g0222481 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VCT0	1.8e-87	98.16	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17G001190 PE...	[more]
A0A5A7TU00	1.8e-87	98.16	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold829G00280 PE...	[more]
A0A5A7URG5	2.4e-87	98.16	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold132G00520 PE...	[more]
A0A5A7VDP3	4.1e-87	97.55	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1536G00010 P...	[more]
A0A5A7SZD6	4.1e-87	97.55	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G001250 PE...	[more]

BLAST of Cmc08g0222481 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 28..165 e-value: 1.6E-33 score: 117.6
None	No IPR available	PANTHER	PTHR45835	YALI0A06105P	coord: 5..164
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 31..166 score: 15.982417
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 32..163

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0222481.1	Cmc08g0222481.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0043227	membrane-bounded organelle
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding